Gchil4838.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4838.t1
Unique NameGchil4838.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length490
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004393_piloncontigtig00004393_pilon:893783..895322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog303518.XP_005752706.1
Preferred nameCLCN5
PFAMsCBS,Voltage_CLC
Max annot lvl33208|Metazoa
KEGG koko:K05012
KEGG TC2.A.49.1.1,2.A.49.1.2,2.A.49.1.3,2.A.49.2.2,2.A.49.2.3,2.A.49.2.8
GOsGO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006897,GO:0007588,GO:0008150,GO:0008308,GO:0008509,GO:0010008,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015291,GO:0015297,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0016192,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0032501,GO:0034220,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0097708,GO:0098588,GO:0098656,GO:0098657,GO:0098660,GO:0098661,GO:0098805,GO:1902476
Evalue6.41e-81
EggNOG OGsCOG0038@1|root,KOG0475@2759|Eukaryota,38CGM@33154|Opisthokonta,3BBJ7@33208|Metazoa,3CRTB@33213|Bilateria,482T6@7711|Chordata,4962E@7742|Vertebrata,49U2F@7898|Actinopterygii
DescriptionChloride channel 5
COG categoryP
BRITEko00000,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4838Gchil4838Gracilaria chilensis NLEC103_M9 malegenetig00004393_pilon 892788..895322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4838.t1Gchil4838.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004393_pilon 893783..895322 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4838.t1.stop1Gchil4838.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004393_pilon 893783..893785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4838.t1.CDS1Gchil4838.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004393_pilon 893783..893827 -
Gchil4838.t1.CDS2Gchil4838.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004393_pilon 893898..895322 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4838.t1.exon1Gchil4838.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004393_pilon 893783..893827 -
Gchil4838.t1.exon2Gchil4838.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004393_pilon 893898..895322 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4838.t1.intron1Gchil4838.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004393_pilon 893828..893897 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4838.t1.start1Gchil4838.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004393_pilon 895320..895322 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4838.t1 ID=Gchil4838.t1|Name=Gchil4838.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=490bp
MNPTDEDAISPSLPNLSYGSLDRRDIPDRSVPPPSRPFDASHDALDAMVS
RDSLSAIVRPGWAVPGGSGDTSAFVLSRASFDGTVPQTSIPIGTEPSQRG
SNITRHGSRGQFSRLRLRTTHQNSSAGFAGDYVIHDFINESTRSQTVHRE
KIREEGGARAQYLYTAKMYFVLVVMGIGAGMIAAGLDLQVEWLSDIKFGV
CTRGWYLTREMCCKLDEKLDRCPYQEWSELLAFLPWPFVFSLPAREFILY
TFFAILFGVISAFLVKRFAPHAAGSGVPEIKTVLSGVVIKGYLSSWAFIV
KIVGLAFSVASSLNLGKEGPFVHLVSVLANMVASRFAEFRENNNIMLEFV
TVGTAAGVSVAFNAPIGGVLFAFEEAASYFPNRVLWRSFFASALAELTLK
LLNPFFNGKAVMFEVQHTLDWYWFEMIAFFLIGSLGGVLGSIFIHYNVKW
SKLRIHDPWLKRSPILEVALIVLATNVPRRAHMGRMGSL*
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spliced messenger RNA

>Gchil4838.t1 ID=Gchil4838.t1|Name=Gchil4838.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00004393_pilon:893783..895322- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCCACAGACGAGGACGCAATCAGTCCAAGCCTTCCAAACCTATC
CTATGGTTCCCTTGATCGCAGGGACATCCCCGACCGCTCCGTGCCACCGC
CTTCCCGTCCATTTGATGCTTCACACGATGCGCTGGACGCCATGGTGTCA
CGCGATTCTCTTTCGGCCATCGTGCGCCCTGGATGGGCTGTCCCCGGCGG
GAGTGGCGACACCTCTGCCTTTGTTCTATCGCGTGCATCGTTTGATGGCA
CTGTACCACAGACCTCTATTCCCATAGGAACTGAACCCTCTCAGCGTGGC
TCTAATATCACGCGACATGGCTCAAGAGGTCAATTTTCTCGTTTACGACT
TCGAACCACTCATCAGAACAGCAGCGCTGGCTTTGCCGGCGATTACGTCA
TTCATGACTTCATCAATGAGAGCACTCGAAGCCAGACCGTCCATCGCGAA
AAGATTCGCGAAGAAGGAGGCGCCAGAGCCCAGTATCTGTACACAGCCAA
GATGTACTTTGTGCTGGTTGTCATGGGCATCGGTGCCGGAATGATTGCCG
CTGGTCTTGATCTTCAAGTTGAGTGGTTATCTGATATTAAGTTTGGCGTT
TGTACTCGCGGCTGGTACCTCACTCGTGAAATGTGCTGCAAGCTTGATGA
GAAACTTGATAGATGTCCGTACCAAGAATGGTCTGAATTGCTTGCCTTTC
TGCCTTGGCCGTTCGTCTTTTCATTACCGGCTCGCGAGTTCATATTGTAT
ACTTTCTTCGCGATACTTTTCGGTGTTATATCAGCCTTTCTTGTCAAGAG
GTTTGCGCCGCATGCTGCTGGATCTGGCGTTCCCGAGATTAAGACCGTTC
TCAGCGGCGTAGTTATCAAGGGATATTTAAGCTCTTGGGCGTTTATTGTT
AAGATCGTTGGCCTAGCATTTTCAGTTGCATCGAGTCTAAACCTTGGTAA
GGAAGGCCCCTTTGTTCATCTTGTTTCCGTGCTTGCCAACATGGTGGCTT
CACGGTTTGCCGAGTTTCGAGAGAACAACAATATCATGCTCGAATTTGTG
ACGGTTGGCACTGCGGCCGGCGTTTCTGTAGCTTTTAATGCTCCTATTGG
AGGTGTGCTCTTTGCTTTTGAGGAAGCAGCAAGCTACTTCCCGAACAGAG
TTTTATGGCGTTCATTTTTTGCATCTGCGCTTGCAGAACTAACTTTGAAG
TTGCTCAACCCGTTCTTTAATGGAAAGGCAGTTATGTTTGAAGTTCAACA
CACACTTGACTGGTATTGGTTTGAAATGATTGCATTTTTTCTCATTGGTT
CATTAGGAGGTGTACTTGGCTCCATTTTCATTCACTACAACGTCAAATGG
TCAAAGTTGAGAATTCATGATCCTTGGCTCAAACGAAGTCCTATACTGGA
GGTTGCGTTAATTGTGCTTGCCACTAATGTTCCGAGACGGGCTCATATGG
GGAGAATGGGGAGTCTTTAA
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protein sequence of Gchil4838.t1

>Gchil4838.t1 ID=Gchil4838.t1|Name=Gchil4838.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=490bp
MNPTDEDAISPSLPNLSYGSLDRRDIPDRSVPPPSRPFDASHDALDAMVS
RDSLSAIVRPGWAVPGGSGDTSAFVLSRASFDGTVPQTSIPIGTEPSQRG
SNITRHGSRGQFSRLRLRTTHQNSSAGFAGDYVIHDFINESTRSQTVHRE
KIREEGGARAQYLYTAKMYFVLVVMGIGAGMIAAGLDLQVEWLSDIKFGV
CTRGWYLTREMCCKLDEKLDRCPYQEWSELLAFLPWPFVFSLPAREFILY
TFFAILFGVISAFLVKRFAPHAAGSGVPEIKTVLSGVVIKGYLSSWAFIV
KIVGLAFSVASSLNLGKEGPFVHLVSVLANMVASRFAEFRENNNIMLEFV
TVGTAAGVSVAFNAPIGGVLFAFEEAASYFPNRVLWRSFFASALAELTLK
LLNPFFNGKAVMFEVQHTLDWYWFEMIAFFLIGSLGGVLGSIFIHYNVKW
SKLRIHDPWLKRSPILEVALIVLATNVPRRAHMGRMGSL*
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mRNA from alignment at tig00004393_pilon:893783..895322-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4838.t1 ID=Gchil4838.t1|Name=Gchil4838.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1540bp|location=Sequence derived from alignment at tig00004393_pilon:893783..895322- (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCCACAGACGAGGACGCAATCAGTCCAAGCCTTCCAAACCTATC
CTATGGTTCCCTTGATCGCAGGGACATCCCCGACCGCTCCGTGCCACCGC
CTTCCCGTCCATTTGATGCTTCACACGATGCGCTGGACGCCATGGTGTCA
CGCGATTCTCTTTCGGCCATCGTGCGCCCTGGATGGGCTGTCCCCGGCGG
GAGTGGCGACACCTCTGCCTTTGTTCTATCGCGTGCATCGTTTGATGGCA
CTGTACCACAGACCTCTATTCCCATAGGAACTGAACCCTCTCAGCGTGGC
TCTAATATCACGCGACATGGCTCAAGAGGTCAATTTTCTCGTTTACGACT
TCGAACCACTCATCAGAACAGCAGCGCTGGCTTTGCCGGCGATTACGTCA
TTCATGACTTCATCAATGAGAGCACTCGAAGCCAGACCGTCCATCGCGAA
AAGATTCGCGAAGAAGGAGGCGCCAGAGCCCAGTATCTGTACACAGCCAA
GATGTACTTTGTGCTGGTTGTCATGGGCATCGGTGCCGGAATGATTGCCG
CTGGTCTTGATCTTCAAGTTGAGTGGTTATCTGATATTAAGTTTGGCGTT
TGTACTCGCGGCTGGTACCTCACTCGTGAAATGTGCTGCAAGCTTGATGA
GAAACTTGATAGATGTCCGTACCAAGAATGGTCTGAATTGCTTGCCTTTC
TGCCTTGGCCGTTCGTCTTTTCATTACCGGCTCGCGAGTTCATATTGTAT
ACTTTCTTCGCGATACTTTTCGGTGTTATATCAGCCTTTCTTGTCAAGAG
GTTTGCGCCGCATGCTGCTGGATCTGGCGTTCCCGAGATTAAGACCGTTC
TCAGCGGCGTAGTTATCAAGGGATATTTAAGCTCTTGGGCGTTTATTGTT
AAGATCGTTGGCCTAGCATTTTCAGTTGCATCGAGTCTAAACCTTGGTAA
GGAAGGCCCCTTTGTTCATCTTGTTTCCGTGCTTGCCAACATGGTGGCTT
CACGGTTTGCCGAGTTTCGAGAGAACAACAATATCATGCTCGAATTTGTG
ACGGTTGGCACTGCGGCCGGCGTTTCTGTAGCTTTTAATGCTCCTATTGG
AGGTGTGCTCTTTGCTTTTGAGGAAGCAGCAAGCTACTTCCCGAACAGAG
TTTTATGGCGTTCATTTTTTGCATCTGCGCTTGCAGAACTAACTTTGAAG
TTGCTCAACCCGTTCTTTAATGGAAAGGCAGTTATGTTTGAAGTTCAACA
CACACTTGACTGGTATTGGTTTGAAATGATTGCATTTTTTCTCATTGGTT
CATTAGGAGGTGTACTTGGCTCCATTTTCATTCACTACAACGTCAAATGG
TCAAAGTTGAGAATTCATGATCCTTGGCTCAAACGAAGTCCTATACTGGA
GGTTGCGTTAATTGTGCTTGCCACTGTACTACTACAATATCCTATTCCTT
TTCTTCGCCTGACGAACACACAAATTCTGACCGTTCTTTTCTCAGAATGT
TCCGAGACGGGCTCATATGGGGAGAATGGGGAGTCTTTAA
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Coding sequence (CDS) from alignment at tig00004393_pilon:893783..895322-

>Gchil4838.t1 ID=Gchil4838.t1|Name=Gchil4838.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1470bp|location=Sequence derived from alignment at tig00004393_pilon:893783..895322- (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCCACAGACGAGGACGCAATCAGTCCAAGCCTTCCAAACCTATC
CTATGGTTCCCTTGATCGCAGGGACATCCCCGACCGCTCCGTGCCACCGC
CTTCCCGTCCATTTGATGCTTCACACGATGCGCTGGACGCCATGGTGTCA
CGCGATTCTCTTTCGGCCATCGTGCGCCCTGGATGGGCTGTCCCCGGCGG
GAGTGGCGACACCTCTGCCTTTGTTCTATCGCGTGCATCGTTTGATGGCA
CTGTACCACAGACCTCTATTCCCATAGGAACTGAACCCTCTCAGCGTGGC
TCTAATATCACGCGACATGGCTCAAGAGGTCAATTTTCTCGTTTACGACT
TCGAACCACTCATCAGAACAGCAGCGCTGGCTTTGCCGGCGATTACGTCA
TTCATGACTTCATCAATGAGAGCACTCGAAGCCAGACCGTCCATCGCGAA
AAGATTCGCGAAGAAGGAGGCGCCAGAGCCCAGTATCTGTACACAGCCAA
GATGTACTTTGTGCTGGTTGTCATGGGCATCGGTGCCGGAATGATTGCCG
CTGGTCTTGATCTTCAAGTTGAGTGGTTATCTGATATTAAGTTTGGCGTT
TGTACTCGCGGCTGGTACCTCACTCGTGAAATGTGCTGCAAGCTTGATGA
GAAACTTGATAGATGTCCGTACCAAGAATGGTCTGAATTGCTTGCCTTTC
TGCCTTGGCCGTTCGTCTTTTCATTACCGGCTCGCGAGTTCATATTGTAT
ACTTTCTTCGCGATACTTTTCGGTGTTATATCAGCCTTTCTTGTCAAGAG
GTTTGCGCCGCATGCTGCTGGATCTGGCGTTCCCGAGATTAAGACCGTTC
TCAGCGGCGTAGTTATCAAGGGATATTTAAGCTCTTGGGCGTTTATTGTT
AAGATCGTTGGCCTAGCATTTTCAGTTGCATCGAGTCTAAACCTTGGTAA
GGAAGGCCCCTTTGTTCATCTTGTTTCCGTGCTTGCCAACATGGTGGCTT
CACGGTTTGCCGAGTTTCGAGAGAACAACAATATCATGCTCGAATTTGTG
ACGGTTGGCACTGCGGCCGGCGTTTCTGTAGCTTTTAATGCTCCTATTGG
AGGTGTGCTCTTTGCTTTTGAGGAAGCAGCAAGCTACTTCCCGAACAGAG
TTTTATGGCGTTCATTTTTTGCATCTGCGCTTGCAGAACTAACTTTGAAG
TTGCTCAACCCGTTCTTTAATGGAAAGGCAGTTATGTTTGAAGTTCAACA
CACACTTGACTGGTATTGGTTTGAAATGATTGCATTTTTTCTCATTGGTT
CATTAGGAGGTGTACTTGGCTCCATTTTCATTCACTACAACGTCAAATGG
TCAAAGTTGAGAATTCATGATCCTTGGCTCAAACGAAGTCCTATACTGGA
GGTTGCGTTAATTGTGCTTGCCACTAATGTTCCGAGACGGGCTCATATGG
GGAGAATGGGGAGTCTTTAA
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