Gchil4711.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4711.t1
Unique NameGchil4711.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length708
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004393_piloncontigtig00004393_pilon:47875..49998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1313172.YM304_00980
PFAMsBeta_propel
Max annot lvl201174|Actinobacteria
Evalue5.58e-108
EggNOG OGsCOG1948@1|root,COG4880@2|Bacteria,2I8JU@201174|Actinobacteria
DescriptionBeta propeller domain
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4711Gchil4711Gracilaria chilensis NLEC103_M9 malegenetig00004393_pilon 47875..49998 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4711.t1.stop1Gchil4711.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004393_pilon 47875..47877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4711.t1.CDS1Gchil4711.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004393_pilon 47875..49998 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4711.t1.exon1Gchil4711.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004393_pilon 47875..49998 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4711.t1.start1Gchil4711.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004393_pilon 49996..49998 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4711.t1Gchil4711.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004393_pilon 47875..49998 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4711.t1 ID=Gchil4711.t1|Name=Gchil4711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=708bp
MKPFSFRQTAVLGVAILVLHTRNTYAISLNPYNTCTDLVSYLKNNALSRV
GAYGLGDSRNFGSRSSISCPFSGGIIGLFGSGTVGGIGGLSGNGGLSGNG
GLSGNGGLSGNGGLSGNGGLSGNGGLDGIVAFGGNGGSGGAPAPPVSNSE
TVTNQVAGVDFSETNVQVEGVDEPDIIKTDGKTVFVIRGTTFFVLQVEFA
GTKGRVTGQLTLPSRPIEMLVQGDHLLVVARTSIGVGFVSSSASGLGFLS
GQSTTTVYQINVMSGVPKLVATLRMEGQYLNSREVDGLARIVMLFKPSLR
FKYPSCSFPFAEAEAHNQGIIRGTTEKDWYPSYSLKVEGQINEVTDLISS
CSNVYVPGLFSGFELLTVVTLPVSGYLKPTGSVSIVSEGDEVYSTASSLY
VTTTEYRWDFFGLENSVRSGGGFKTSIHKFSLNNFGANYVASGEVSGSVL
NQFSMHDLNGYFFIATTDGAPWWGSRDERSSKLSSYTTDVPSKSLSQVGQ
VGNLGRGERIFAVRYVKDTAYVVTFRQVDPLYIIDLSQPWLLRVTGELKI
PGFSSYLHPISPGLILGVGQDATPEGRATGSKVSLFDVSDKTTPKELSSW
SLPKSSSTAQWDHRAFLYWEPASVAVLPVSINYFSNRFIGSVILEVSDGI
IKERGRIEHEATFPSSSTHSIERNLILGGKNLWSLSSQQIQVNDIKDLSK
ISVTTLT*
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spliced messenger RNA

>Gchil4711.t1 ID=Gchil4711.t1|Name=Gchil4711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2124bp|location=Sequence derived from alignment at tig00004393_pilon:47875..49998- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCCTTCAGTTTCCGCCAGACTGCCGTTTTAGGCGTAGCGATTCT
CGTCCTCCATACACGGAACACATACGCCATATCACTTAATCCCTACAACA
CTTGCACAGATCTCGTCAGCTACTTAAAAAACAACGCTCTCTCGCGCGTC
GGAGCATACGGTTTAGGAGACTCAAGGAACTTTGGTTCGAGATCTTCGAT
TTCCTGCCCGTTTTCCGGTGGAATAATTGGTCTATTTGGTTCTGGTACCG
TTGGGGGTATTGGAGGCCTTAGCGGTAATGGAGGCCTTAGCGGTAATGGA
GGCCTTAGCGGTAATGGAGGCCTTAGCGGTAATGGAGGCCTTAGCGGTAA
TGGAGGCCTTAGCGGTAATGGAGGCCTTGACGGTATTGTAGCCTTTGGCG
GTAATGGAGGCTCAGGTGGCGCCCCTGCTCCTCCAGTAAGCAATTCTGAA
ACTGTAACCAACCAAGTTGCAGGCGTGGATTTCTCAGAGACAAATGTGCA
AGTGGAGGGTGTTGATGAACCAGACATAATAAAAACAGATGGCAAGACGG
TGTTCGTGATTCGTGGAACGACGTTTTTCGTACTTCAAGTTGAGTTTGCA
GGCACAAAAGGAAGAGTAACTGGGCAGCTTACTTTGCCGTCACGTCCTAT
AGAAATGCTTGTCCAGGGTGATCATCTGCTCGTTGTTGCGCGAACTTCCA
TTGGAGTCGGCTTTGTTTCCTCATCTGCCTCCGGCCTTGGATTCTTAAGC
GGCCAAAGCACGACGACTGTTTACCAGATCAATGTGATGAGTGGAGTTCC
GAAATTGGTTGCCACCCTTCGAATGGAGGGGCAGTACTTGAACTCGAGGG
AAGTTGACGGCCTGGCCCGGATTGTCATGCTGTTTAAGCCTAGTCTGCGC
TTCAAGTATCCTTCTTGTAGTTTTCCTTTCGCTGAAGCGGAAGCCCACAA
TCAAGGCATTATTCGTGGTACCACCGAAAAGGATTGGTATCCCAGCTATT
CCTTAAAAGTGGAAGGACAGATCAACGAAGTCACTGATTTGATTTCATCT
TGCTCGAATGTGTATGTCCCAGGGCTATTCTCAGGATTTGAATTGCTCAC
AGTTGTCACTCTACCCGTTTCGGGATATCTCAAGCCAACAGGAAGCGTTT
CGATCGTCTCCGAAGGCGATGAAGTGTACTCGACAGCCTCGTCGTTGTAC
GTGACGACAACCGAATATCGATGGGACTTTTTCGGCTTAGAGAATAGTGT
GAGGTCTGGAGGAGGTTTCAAGACATCCATCCATAAGTTTTCTCTGAACA
ACTTTGGAGCAAATTATGTTGCTAGTGGTGAAGTTTCAGGCAGCGTGCTA
AACCAATTCTCGATGCATGATCTTAATGGATATTTCTTCATTGCCACCAC
TGATGGAGCACCGTGGTGGGGCTCACGAGATGAGAGATCAAGCAAGTTGA
GTTCATATACAACTGATGTTCCTTCCAAGAGCTTATCTCAAGTCGGACAA
GTTGGCAACTTGGGAAGAGGAGAACGAATATTTGCCGTTCGATACGTGAA
GGACACGGCATATGTCGTAACGTTTAGGCAAGTTGATCCTTTGTACATCA
TTGATTTGTCTCAGCCGTGGCTGCTGAGAGTAACAGGCGAATTGAAAATT
CCAGGATTCAGTTCTTATCTTCATCCGATCTCTCCTGGACTTATTTTGGG
CGTTGGGCAAGATGCTACACCTGAGGGTAGAGCTACAGGGTCGAAGGTAT
CATTGTTCGATGTTTCGGATAAAACAACTCCGAAGGAGCTCTCTTCATGG
TCTTTGCCAAAAAGCAGTAGTACCGCGCAGTGGGATCACCGTGCTTTCCT
GTATTGGGAGCCAGCGTCTGTCGCAGTTCTCCCAGTATCCATCAATTATT
TTTCGAATAGGTTCATTGGTTCTGTTATTCTGGAAGTCTCAGATGGCATA
ATCAAGGAACGTGGTCGAATCGAGCACGAAGCAACGTTTCCGAGTTCATC
CACGCATTCTATTGAACGGAATCTAATTCTTGGGGGCAAAAACTTGTGGT
CCTTGTCATCTCAACAGATTCAGGTGAATGATATCAAAGATCTCTCAAAA
ATATCTGTCACGACTCTGACCTGA
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protein sequence of Gchil4711.t1

>Gchil4711.t1 ID=Gchil4711.t1|Name=Gchil4711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=708bp
MKPFSFRQTAVLGVAILVLHTRNTYAISLNPYNTCTDLVSYLKNNALSRV
GAYGLGDSRNFGSRSSISCPFSGGIIGLFGSGTVGGIGGLSGNGGLSGNG
GLSGNGGLSGNGGLSGNGGLSGNGGLDGIVAFGGNGGSGGAPAPPVSNSE
TVTNQVAGVDFSETNVQVEGVDEPDIIKTDGKTVFVIRGTTFFVLQVEFA
GTKGRVTGQLTLPSRPIEMLVQGDHLLVVARTSIGVGFVSSSASGLGFLS
GQSTTTVYQINVMSGVPKLVATLRMEGQYLNSREVDGLARIVMLFKPSLR
FKYPSCSFPFAEAEAHNQGIIRGTTEKDWYPSYSLKVEGQINEVTDLISS
CSNVYVPGLFSGFELLTVVTLPVSGYLKPTGSVSIVSEGDEVYSTASSLY
VTTTEYRWDFFGLENSVRSGGGFKTSIHKFSLNNFGANYVASGEVSGSVL
NQFSMHDLNGYFFIATTDGAPWWGSRDERSSKLSSYTTDVPSKSLSQVGQ
VGNLGRGERIFAVRYVKDTAYVVTFRQVDPLYIIDLSQPWLLRVTGELKI
PGFSSYLHPISPGLILGVGQDATPEGRATGSKVSLFDVSDKTTPKELSSW
SLPKSSSTAQWDHRAFLYWEPASVAVLPVSINYFSNRFIGSVILEVSDGI
IKERGRIEHEATFPSSSTHSIERNLILGGKNLWSLSSQQIQVNDIKDLSK
ISVTTLT*
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mRNA from alignment at tig00004393_pilon:47875..49998-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4711.t1 ID=Gchil4711.t1|Name=Gchil4711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2124bp|location=Sequence derived from alignment at tig00004393_pilon:47875..49998- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCCCTTCAGTTTCCGCCAGACTGCCGTTTTAGGCGTAGCGATTCT
CGTCCTCCATACACGGAACACATACGCCATATCACTTAATCCCTACAACA
CTTGCACAGATCTCGTCAGCTACTTAAAAAACAACGCTCTCTCGCGCGTC
GGAGCATACGGTTTAGGAGACTCAAGGAACTTTGGTTCGAGATCTTCGAT
TTCCTGCCCGTTTTCCGGTGGAATAATTGGTCTATTTGGTTCTGGTACCG
TTGGGGGTATTGGAGGCCTTAGCGGTAATGGAGGCCTTAGCGGTAATGGA
GGCCTTAGCGGTAATGGAGGCCTTAGCGGTAATGGAGGCCTTAGCGGTAA
TGGAGGCCTTAGCGGTAATGGAGGCCTTGACGGTATTGTAGCCTTTGGCG
GTAATGGAGGCTCAGGTGGCGCCCCTGCTCCTCCAGTAAGCAATTCTGAA
ACTGTAACCAACCAAGTTGCAGGCGTGGATTTCTCAGAGACAAATGTGCA
AGTGGAGGGTGTTGATGAACCAGACATAATAAAAACAGATGGCAAGACGG
TGTTCGTGATTCGTGGAACGACGTTTTTCGTACTTCAAGTTGAGTTTGCA
GGCACAAAAGGAAGAGTAACTGGGCAGCTTACTTTGCCGTCACGTCCTAT
AGAAATGCTTGTCCAGGGTGATCATCTGCTCGTTGTTGCGCGAACTTCCA
TTGGAGTCGGCTTTGTTTCCTCATCTGCCTCCGGCCTTGGATTCTTAAGC
GGCCAAAGCACGACGACTGTTTACCAGATCAATGTGATGAGTGGAGTTCC
GAAATTGGTTGCCACCCTTCGAATGGAGGGGCAGTACTTGAACTCGAGGG
AAGTTGACGGCCTGGCCCGGATTGTCATGCTGTTTAAGCCTAGTCTGCGC
TTCAAGTATCCTTCTTGTAGTTTTCCTTTCGCTGAAGCGGAAGCCCACAA
TCAAGGCATTATTCGTGGTACCACCGAAAAGGATTGGTATCCCAGCTATT
CCTTAAAAGTGGAAGGACAGATCAACGAAGTCACTGATTTGATTTCATCT
TGCTCGAATGTGTATGTCCCAGGGCTATTCTCAGGATTTGAATTGCTCAC
AGTTGTCACTCTACCCGTTTCGGGATATCTCAAGCCAACAGGAAGCGTTT
CGATCGTCTCCGAAGGCGATGAAGTGTACTCGACAGCCTCGTCGTTGTAC
GTGACGACAACCGAATATCGATGGGACTTTTTCGGCTTAGAGAATAGTGT
GAGGTCTGGAGGAGGTTTCAAGACATCCATCCATAAGTTTTCTCTGAACA
ACTTTGGAGCAAATTATGTTGCTAGTGGTGAAGTTTCAGGCAGCGTGCTA
AACCAATTCTCGATGCATGATCTTAATGGATATTTCTTCATTGCCACCAC
TGATGGAGCACCGTGGTGGGGCTCACGAGATGAGAGATCAAGCAAGTTGA
GTTCATATACAACTGATGTTCCTTCCAAGAGCTTATCTCAAGTCGGACAA
GTTGGCAACTTGGGAAGAGGAGAACGAATATTTGCCGTTCGATACGTGAA
GGACACGGCATATGTCGTAACGTTTAGGCAAGTTGATCCTTTGTACATCA
TTGATTTGTCTCAGCCGTGGCTGCTGAGAGTAACAGGCGAATTGAAAATT
CCAGGATTCAGTTCTTATCTTCATCCGATCTCTCCTGGACTTATTTTGGG
CGTTGGGCAAGATGCTACACCTGAGGGTAGAGCTACAGGGTCGAAGGTAT
CATTGTTCGATGTTTCGGATAAAACAACTCCGAAGGAGCTCTCTTCATGG
TCTTTGCCAAAAAGCAGTAGTACCGCGCAGTGGGATCACCGTGCTTTCCT
GTATTGGGAGCCAGCGTCTGTCGCAGTTCTCCCAGTATCCATCAATTATT
TTTCGAATAGGTTCATTGGTTCTGTTATTCTGGAAGTCTCAGATGGCATA
ATCAAGGAACGTGGTCGAATCGAGCACGAAGCAACGTTTCCGAGTTCATC
CACGCATTCTATTGAACGGAATCTAATTCTTGGGGGCAAAAACTTGTGGT
CCTTGTCATCTCAACAGATTCAGGTGAATGATATCAAAGATCTCTCAAAA
ATATCTGTCACGACTCTGACCTGA
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Coding sequence (CDS) from alignment at tig00004393_pilon:47875..49998-

>Gchil4711.t1 ID=Gchil4711.t1|Name=Gchil4711.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2124bp|location=Sequence derived from alignment at tig00004393_pilon:47875..49998- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCCCTTCAGTTTCCGCCAGACTGCCGTTTTAGGCGTAGCGATTCT
CGTCCTCCATACACGGAACACATACGCCATATCACTTAATCCCTACAACA
CTTGCACAGATCTCGTCAGCTACTTAAAAAACAACGCTCTCTCGCGCGTC
GGAGCATACGGTTTAGGAGACTCAAGGAACTTTGGTTCGAGATCTTCGAT
TTCCTGCCCGTTTTCCGGTGGAATAATTGGTCTATTTGGTTCTGGTACCG
TTGGGGGTATTGGAGGCCTTAGCGGTAATGGAGGCCTTAGCGGTAATGGA
GGCCTTAGCGGTAATGGAGGCCTTAGCGGTAATGGAGGCCTTAGCGGTAA
TGGAGGCCTTAGCGGTAATGGAGGCCTTGACGGTATTGTAGCCTTTGGCG
GTAATGGAGGCTCAGGTGGCGCCCCTGCTCCTCCAGTAAGCAATTCTGAA
ACTGTAACCAACCAAGTTGCAGGCGTGGATTTCTCAGAGACAAATGTGCA
AGTGGAGGGTGTTGATGAACCAGACATAATAAAAACAGATGGCAAGACGG
TGTTCGTGATTCGTGGAACGACGTTTTTCGTACTTCAAGTTGAGTTTGCA
GGCACAAAAGGAAGAGTAACTGGGCAGCTTACTTTGCCGTCACGTCCTAT
AGAAATGCTTGTCCAGGGTGATCATCTGCTCGTTGTTGCGCGAACTTCCA
TTGGAGTCGGCTTTGTTTCCTCATCTGCCTCCGGCCTTGGATTCTTAAGC
GGCCAAAGCACGACGACTGTTTACCAGATCAATGTGATGAGTGGAGTTCC
GAAATTGGTTGCCACCCTTCGAATGGAGGGGCAGTACTTGAACTCGAGGG
AAGTTGACGGCCTGGCCCGGATTGTCATGCTGTTTAAGCCTAGTCTGCGC
TTCAAGTATCCTTCTTGTAGTTTTCCTTTCGCTGAAGCGGAAGCCCACAA
TCAAGGCATTATTCGTGGTACCACCGAAAAGGATTGGTATCCCAGCTATT
CCTTAAAAGTGGAAGGACAGATCAACGAAGTCACTGATTTGATTTCATCT
TGCTCGAATGTGTATGTCCCAGGGCTATTCTCAGGATTTGAATTGCTCAC
AGTTGTCACTCTACCCGTTTCGGGATATCTCAAGCCAACAGGAAGCGTTT
CGATCGTCTCCGAAGGCGATGAAGTGTACTCGACAGCCTCGTCGTTGTAC
GTGACGACAACCGAATATCGATGGGACTTTTTCGGCTTAGAGAATAGTGT
GAGGTCTGGAGGAGGTTTCAAGACATCCATCCATAAGTTTTCTCTGAACA
ACTTTGGAGCAAATTATGTTGCTAGTGGTGAAGTTTCAGGCAGCGTGCTA
AACCAATTCTCGATGCATGATCTTAATGGATATTTCTTCATTGCCACCAC
TGATGGAGCACCGTGGTGGGGCTCACGAGATGAGAGATCAAGCAAGTTGA
GTTCATATACAACTGATGTTCCTTCCAAGAGCTTATCTCAAGTCGGACAA
GTTGGCAACTTGGGAAGAGGAGAACGAATATTTGCCGTTCGATACGTGAA
GGACACGGCATATGTCGTAACGTTTAGGCAAGTTGATCCTTTGTACATCA
TTGATTTGTCTCAGCCGTGGCTGCTGAGAGTAACAGGCGAATTGAAAATT
CCAGGATTCAGTTCTTATCTTCATCCGATCTCTCCTGGACTTATTTTGGG
CGTTGGGCAAGATGCTACACCTGAGGGTAGAGCTACAGGGTCGAAGGTAT
CATTGTTCGATGTTTCGGATAAAACAACTCCGAAGGAGCTCTCTTCATGG
TCTTTGCCAAAAAGCAGTAGTACCGCGCAGTGGGATCACCGTGCTTTCCT
GTATTGGGAGCCAGCGTCTGTCGCAGTTCTCCCAGTATCCATCAATTATT
TTTCGAATAGGTTCATTGGTTCTGTTATTCTGGAAGTCTCAGATGGCATA
ATCAAGGAACGTGGTCGAATCGAGCACGAAGCAACGTTTCCGAGTTCATC
CACGCATTCTATTGAACGGAATCTAATTCTTGGGGGCAAAAACTTGTGGT
CCTTGTCATCTCAACAGATTCAGGTGAATGATATCAAAGATCTCTCAAAA
ATATCTGTCACGACTCTGACCTGA
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