Gchil4710.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4710.t1
Unique Name	Gchil4710.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	267

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004393_pilon	contig	tig00004393_pilon:13064..13864 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	215358.XP_010752060.1
Preferred name	col6a6
PFAMs	Collagen,Kunitz_BPTI,VWA
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K06236,ko:K06238,ko:K19720
KEGG Pathway	ko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
GOs	GO:0005575,GO:0005576,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030198,GO:0031012,GO:0032991,GO:0043062,GO:0043933,GO:0044085,GO:0044421,GO:0051259,GO:0051291,GO:0065003,GO:0070206,GO:0070208,GO:0071840
Evalue	2.63e-11
EggNOG OGs	KOG1216@1\|root,KOG3544@1\|root,KOG1216@2759\|Eukaryota,KOG3544@2759\|Eukaryota,38DGH@33154\|Opisthokonta,3BA28@33208\|Metazoa,3CSUY@33213\|Bilateria,4858V@7711\|Chordata,48UTA@7742\|Vertebrata,49Q2N@7898\|Actinopterygii
Description	collagen
COG category	W
BRITE	ko00000,ko00001,ko00536,ko04147,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4710	Gchil4710	Gracilaria chilensis NLEC103_M9 male	gene	tig00004393_pilon 13064..13864 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4710.t1.start1	Gchil4710.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004393_pilon 13064..13066 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4710.t1.CDS1	Gchil4710.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004393_pilon 13064..13864 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4710.t1.exon1	Gchil4710.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004393_pilon 13064..13864 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4710.t1.stop1	Gchil4710.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004393_pilon 13862..13864 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4710.t1	Gchil4710.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004393_pilon 13064..13864 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004393_pilon:13064..13864+
coding sequence from alignment at tig00004393_pilon:13064..13864+

mRNA sequence

>Gchil4710.t1 ID=Gchil4710.t1|Name=Gchil4710.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=267bp
MFEFNLFSIGVGAPENELYLKGLASKSEFYSKASVSQLKALALARKYVNF
LSCPKSCPLDHVCFALDQSRSIQSQDWDKKKIFVTDIAVEISNPNVETTY
SAVKFSSSVQPVARTIRLGVFTSQVLSTTQSGGGTNINSGLESCFDRVKS
GKGTRSIILLTDGRSFAASIANQIKQAGISLVSIGIGNNVDVIYLKNIAS
DPDSEFYVPADFAKLDEKVAKVVKTTCKTPTVTSFPDDVIGLASTLAASA
PSDAKESSTFCDGGEC*

spliced messenger RNA

>Gchil4710.t1 ID=Gchil4710.t1|Name=Gchil4710.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00004393_pilon:13064..13864+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGAGTTTAACCTGTTCAGTATTGGTGTGGGAGCGCCAGAAAACGA
ACTGTATCTGAAAGGACTGGCGAGCAAATCTGAGTTCTATTCCAAGGCCT
CCGTGAGTCAGCTGAAGGCGTTGGCATTGGCGCGGAAATACGTTAACTTT
TTGTCTTGTCCCAAGTCGTGCCCGTTGGATCACGTATGTTTCGCTTTGGA
CCAGAGTAGATCCATTCAGTCGCAAGACTGGGATAAGAAAAAGATATTTG
TCACCGACATTGCAGTAGAGATCAGCAATCCAAATGTTGAAACAACGTAC
TCGGCCGTCAAATTTTCTTCTTCTGTACAGCCTGTTGCCAGAACCATCAG
GCTTGGTGTTTTCACTTCCCAAGTGCTTTCGACTACGCAGAGCGGAGGTG
GTACAAACATTAACTCTGGACTGGAGTCGTGCTTCGACCGGGTGAAGTCT
GGAAAAGGTACTCGATCCATCATTCTGCTGACTGATGGCAGGAGTTTTGC
TGCTTCAATTGCAAATCAGATCAAACAAGCAGGGATATCGTTAGTGTCTA
TCGGCATTGGAAACAACGTCGACGTAATATACCTTAAGAATATTGCGAGC
GATCCGGATTCAGAGTTCTATGTGCCAGCTGACTTTGCCAAATTGGACGA
AAAGGTGGCTAAGGTTGTAAAGACTACCTGCAAAACTCCCACGGTTACGT
CTTTCCCCGATGATGTAATTGGACTCGCATCCACTTTAGCTGCAAGTGCT
CCCAGTGACGCAAAAGAATCTTCTACTTTTTGTGATGGAGGAGAATGTTA
G

protein sequence of Gchil4710.t1

>Gchil4710.t1 ID=Gchil4710.t1|Name=Gchil4710.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=267bp
MFEFNLFSIGVGAPENELYLKGLASKSEFYSKASVSQLKALALARKYVNF
LSCPKSCPLDHVCFALDQSRSIQSQDWDKKKIFVTDIAVEISNPNVETTY
SAVKFSSSVQPVARTIRLGVFTSQVLSTTQSGGGTNINSGLESCFDRVKS
GKGTRSIILLTDGRSFAASIANQIKQAGISLVSIGIGNNVDVIYLKNIAS
DPDSEFYVPADFAKLDEKVAKVVKTTCKTPTVTSFPDDVIGLASTLAASA
PSDAKESSTFCDGGEC*

mRNA from alignment at tig00004393_pilon:13064..13864+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4710.t1 ID=Gchil4710.t1|Name=Gchil4710.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00004393_pilon:13064..13864+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCGAGTTTAACCTGTTCAGTATTGGTGTGGGAGCGCCAGAAAACGA
ACTGTATCTGAAAGGACTGGCGAGCAAATCTGAGTTCTATTCCAAGGCCT
CCGTGAGTCAGCTGAAGGCGTTGGCATTGGCGCGGAAATACGTTAACTTT
TTGTCTTGTCCCAAGTCGTGCCCGTTGGATCACGTATGTTTCGCTTTGGA
CCAGAGTAGATCCATTCAGTCGCAAGACTGGGATAAGAAAAAGATATTTG
TCACCGACATTGCAGTAGAGATCAGCAATCCAAATGTTGAAACAACGTAC
TCGGCCGTCAAATTTTCTTCTTCTGTACAGCCTGTTGCCAGAACCATCAG
GCTTGGTGTTTTCACTTCCCAAGTGCTTTCGACTACGCAGAGCGGAGGTG
GTACAAACATTAACTCTGGACTGGAGTCGTGCTTCGACCGGGTGAAGTCT
GGAAAAGGTACTCGATCCATCATTCTGCTGACTGATGGCAGGAGTTTTGC
TGCTTCAATTGCAAATCAGATCAAACAAGCAGGGATATCGTTAGTGTCTA
TCGGCATTGGAAACAACGTCGACGTAATATACCTTAAGAATATTGCGAGC
GATCCGGATTCAGAGTTCTATGTGCCAGCTGACTTTGCCAAATTGGACGA
AAAGGTGGCTAAGGTTGTAAAGACTACCTGCAAAACTCCCACGGTTACGT
CTTTCCCCGATGATGTAATTGGACTCGCATCCACTTTAGCTGCAAGTGCT
CCCAGTGACGCAAAAGAATCTTCTACTTTTTGTGATGGAGGAGAATGTTA
G

Coding sequence (CDS) from alignment at tig00004393_pilon:13064..13864+

>Gchil4710.t1 ID=Gchil4710.t1|Name=Gchil4710.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=801bp|location=Sequence derived from alignment at tig00004393_pilon:13064..13864+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCGAGTTTAACCTGTTCAGTATTGGTGTGGGAGCGCCAGAAAACGA
ACTGTATCTGAAAGGACTGGCGAGCAAATCTGAGTTCTATTCCAAGGCCT
CCGTGAGTCAGCTGAAGGCGTTGGCATTGGCGCGGAAATACGTTAACTTT
TTGTCTTGTCCCAAGTCGTGCCCGTTGGATCACGTATGTTTCGCTTTGGA
CCAGAGTAGATCCATTCAGTCGCAAGACTGGGATAAGAAAAAGATATTTG
TCACCGACATTGCAGTAGAGATCAGCAATCCAAATGTTGAAACAACGTAC
TCGGCCGTCAAATTTTCTTCTTCTGTACAGCCTGTTGCCAGAACCATCAG
GCTTGGTGTTTTCACTTCCCAAGTGCTTTCGACTACGCAGAGCGGAGGTG
GTACAAACATTAACTCTGGACTGGAGTCGTGCTTCGACCGGGTGAAGTCT
GGAAAAGGTACTCGATCCATCATTCTGCTGACTGATGGCAGGAGTTTTGC
TGCTTCAATTGCAAATCAGATCAAACAAGCAGGGATATCGTTAGTGTCTA
TCGGCATTGGAAACAACGTCGACGTAATATACCTTAAGAATATTGCGAGC
GATCCGGATTCAGAGTTCTATGTGCCAGCTGACTTTGCCAAATTGGACGA
AAAGGTGGCTAAGGTTGTAAAGACTACCTGCAAAACTCCCACGGTTACGT
CTTTCCCCGATGATGTAATTGGACTCGCATCCACTTTAGCTGCAAGTGCT
CCCAGTGACGCAAAAGAATCTTCTACTTTTTGTGATGGAGGAGAATGTTA
G