Gchil4606.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4606.t1
Unique NameGchil4606.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length124
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:1665940..1666311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog102129.Lepto7375DRAFT_5705
Preferred namehemF
PFAMsCoprogen_oxidas
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00884
KEGG koko:K00228
KEGG ReactionR03220
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
GOsGO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983
Evalue0.000953
EggNOG OGsCOG0408@1|root,COG0408@2|Bacteria,1G1PA@1117|Cyanobacteria,1H71I@1150|Oscillatoriales
EC1.3.3.3
DescriptionInvolved in the heme and chlorophyll biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4606Gchil4606Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 1665940..1666311 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4606.t1.start1Gchil4606.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 1665940..1665942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4606.t1.CDS1Gchil4606.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 1665940..1666311 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4606.t1.exon1Gchil4606.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 1665940..1666311 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4606.t1.stop1Gchil4606.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 1666309..1666311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4606.t1Gchil4606.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 1665940..1666311 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4606.t1 ID=Gchil4606.t1|Name=Gchil4606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=124bp
MSPVQRLDRESSFHFITDVLDALLPAYLPLLQPGGADIAFADWRGFELGR
APTNDGAFGSETVETFCISGGANCESTTLRANPLGSWRFSLAPSSLTPAG
KVYDTLRSDTRPARPSLLYIDFI*
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spliced messenger RNA

>Gchil4606.t1 ID=Gchil4606.t1|Name=Gchil4606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=372bp|location=Sequence derived from alignment at tig00004426_pilon:1665940..1666311+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCCGTTCAGCGTCTCGACCGCGAGAGTTCGTTCCACTTTATCAC
TGATGTGTTGGACGCGTTGCTGCCGGCCTATCTGCCCTTGTTACAGCCAG
GCGGCGCTGATATTGCCTTCGCCGACTGGCGCGGCTTTGAGCTTGGCCGC
GCGCCCACCAACGACGGCGCCTTTGGCAGCGAGACTGTGGAGACGTTTTG
TATCTCCGGCGGTGCCAACTGCGAAAGCACTACGCTGCGCGCCAATCCGT
TGGGCTCGTGGCGCTTTTCGCTCGCGCCTTCCTCGCTCACCCCCGCTGGC
AAGGTGTACGACACGCTTCGCAGCGATACACGCCCCGCTCGTCCCTCGCT
CTTGTACATTGACTTCATCTAG
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protein sequence of Gchil4606.t1

>Gchil4606.t1 ID=Gchil4606.t1|Name=Gchil4606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=124bp
MSPVQRLDRESSFHFITDVLDALLPAYLPLLQPGGADIAFADWRGFELGR
APTNDGAFGSETVETFCISGGANCESTTLRANPLGSWRFSLAPSSLTPAG
KVYDTLRSDTRPARPSLLYIDFI*
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mRNA from alignment at tig00004426_pilon:1665940..1666311+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4606.t1 ID=Gchil4606.t1|Name=Gchil4606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=372bp|location=Sequence derived from alignment at tig00004426_pilon:1665940..1666311+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCCCGTTCAGCGTCTCGACCGCGAGAGTTCGTTCCACTTTATCAC
TGATGTGTTGGACGCGTTGCTGCCGGCCTATCTGCCCTTGTTACAGCCAG
GCGGCGCTGATATTGCCTTCGCCGACTGGCGCGGCTTTGAGCTTGGCCGC
GCGCCCACCAACGACGGCGCCTTTGGCAGCGAGACTGTGGAGACGTTTTG
TATCTCCGGCGGTGCCAACTGCGAAAGCACTACGCTGCGCGCCAATCCGT
TGGGCTCGTGGCGCTTTTCGCTCGCGCCTTCCTCGCTCACCCCCGCTGGC
AAGGTGTACGACACGCTTCGCAGCGATACACGCCCCGCTCGTCCCTCGCT
CTTGTACATTGACTTCATCTAG
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Coding sequence (CDS) from alignment at tig00004426_pilon:1665940..1666311+

>Gchil4606.t1 ID=Gchil4606.t1|Name=Gchil4606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=372bp|location=Sequence derived from alignment at tig00004426_pilon:1665940..1666311+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCCCGTTCAGCGTCTCGACCGCGAGAGTTCGTTCCACTTTATCAC
TGATGTGTTGGACGCGTTGCTGCCGGCCTATCTGCCCTTGTTACAGCCAG
GCGGCGCTGATATTGCCTTCGCCGACTGGCGCGGCTTTGAGCTTGGCCGC
GCGCCCACCAACGACGGCGCCTTTGGCAGCGAGACTGTGGAGACGTTTTG
TATCTCCGGCGGTGCCAACTGCGAAAGCACTACGCTGCGCGCCAATCCGT
TGGGCTCGTGGCGCTTTTCGCTCGCGCCTTCCTCGCTCACCCCCGCTGGC
AAGGTGTACGACACGCTTCGCAGCGATACACGCCCCGCTCGTCCCTCGCT
CTTGTACATTGACTTCATCTAG
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