Gchil458.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil458.t1
Unique NameGchil458.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length356
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000060_piloncontigtig00000060_pilon:302950..304017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6412.HelroP86834
Preferred nameDUSP10
PFAMsDSPc,Rhodanese
Max annot lvl33208|Metazoa
KEGG koko:K20216
KEGG Pathwayko04010,ko04013,ko04214,map04010,map04013,map04214
GOsGO:0000188,GO:0001932,GO:0001933,GO:0002237,GO:0002682,GO:0002683,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002698,GO:0002819,GO:0003674,GO:0003824,GO:0004721,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005829,GO:0006464,GO:0006469,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0008150,GO:0008152,GO:0008285,GO:0008330,GO:0008432,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010001,GO:0010033,GO:0010563,GO:0010605,GO:0010632,GO:0010633,GO:0010646,GO:0010648,GO:0010721,GO:0012505,GO:0014013,GO:0014014,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0022407,GO:0022409,GO:0023051,GO:0023057,GO:0030154,GO:0030155,GO:0030334,GO:0030336,GO:0031323,GO:0031324,GO:0031347,GO:0031348,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032268,GO:0032269,GO:0032496,GO:0032501,GO:0032502,GO:0032872,GO:0032873,GO:0032879,GO:0033549,GO:0033673,GO:0033993,GO:0035335,GO:0035970,GO:0036211,GO:0040008,GO:0040012,GO:0040013,GO:0042063,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042578,GO:0043086,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043506,GO:0043508,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044387,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045580,GO:0045582,GO:0045589,GO:0045591,GO:0045595,GO:0045596,GO:0045597,GO:0045598,GO:0045619,GO:0045621,GO:0045685,GO:0045686,GO:0045785,GO:0045824,GO:0045859,GO:0045926,GO:0045936,GO:0046328,GO:0046329,GO:0048273,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048640,GO:0048699,GO:0048709,GO:0048713,GO:0048715,GO:0048731,GO:0048856,GO:0048869,GO:0050678,GO:0050680,GO:0050727,GO:0050728,GO:0050767,GO:0050768,GO:0050776,GO:0050777,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051019,GO:0051093,GO:0051094,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051270,GO:0051271,GO:0051338,GO:0051348,GO:0051704,GO:0051707,GO:0051960,GO:0051961,GO:0060255,GO:0060263,GO:0060264,GO:0060266,GO:0060268,GO:0060284,GO:0061041,GO:0061045,GO:0065007,GO:0065009,GO:0070013,GO:0070302,GO:0070303,GO:0070372,GO:0070373,GO:0071704,GO:0071900,GO:0071901,GO:0080090,GO:0080134,GO:0080135,GO:0090335,GO:0140096,GO:1900744,GO:1901564,GO:1901700,GO:1902105,GO:1902107,GO:1902531,GO:1902532,GO:1903034,GO:1903035,GO:1903037,GO:1903039,GO:1903706,GO:1903708,GO:1903753,GO:1905041,GO:1905042,GO:1990264,GO:2000026,GO:2000145,GO:2000146
Evalue3.62e-21
EggNOG OGsCOG2453@1|root,KOG1716@2759|Eukaryota,39T0V@33154|Opisthokonta,3B93R@33208|Metazoa,3D04V@33213|Bilateria
EC3.1.3.16,3.1.3.48
Descriptionnegative regulation of epithelium regeneration
COG categoryV
BRITEko00000,ko00001,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil458Gchil458Gracilaria chilensis NLEC103_M9 malegenetig00000060_pilon 302950..304017 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil458.t1.stop1Gchil458.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000060_pilon 302950..302952 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil458.t1.CDS1Gchil458.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000060_pilon 302950..304017 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil458.t1.exon1Gchil458.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000060_pilon 302950..304017 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil458.t1.start1Gchil458.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000060_pilon 304015..304017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil458.t1Gchil458.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000060_pilon 302950..304017 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil458.t1 ID=Gchil458.t1|Name=Gchil458.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=356bp
MTTQTLGGMCSAADCEMKSSDAIRTAAISSQSLPDLELNESPEQKLNGAS
SLSCRNLSRRSSHPATDLPLLNLSALSEHVPIGDDLSTPRRNVERIGRSL
SRLKSYLYLGSKHTIRNASLIQANNITHIINLGGHLYHNQHRAVKYLSLS
VRDDVLERIDDFFDVCIDFITDAKQSDGACVVACTQGISRSGAIAVAYLM
SMDNITVEEALRKVRKNRPIIAPNSAFLNQLCEYERRLKGGRASTWVGRV
SYVGSVDKVLVARSIGEGEVDCIDDDVFIIEKGEMMGIVVWKGRRARESV
WKEAIRIANRMANRVRRDCERRGLKAPFDAAQLCVGGRCAPQVEQTLRSA
MQQRS*
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spliced messenger RNA

>Gchil458.t1 ID=Gchil458.t1|Name=Gchil458.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000060_pilon:302950..304017- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAACTCAAACCCTGGGCGGCATGTGTAGTGCCGCAGACTGTGAAAT
GAAAAGCAGTGATGCAATTCGAACGGCTGCCATTTCCTCGCAGAGCTTGC
CGGATTTGGAACTAAACGAAAGTCCTGAACAAAAGCTCAACGGTGCCTCT
TCTCTTTCGTGCCGAAACTTATCTCGTAGAAGTTCGCATCCTGCAACTGA
TTTGCCGTTGCTAAACTTGTCTGCTTTGTCGGAGCACGTTCCTATCGGGG
ATGACTTGAGCACACCACGTCGAAATGTAGAACGTATTGGGCGGTCACTG
TCGCGCTTGAAGAGCTATCTGTACCTTGGAAGCAAGCATACGATAAGAAA
CGCGTCATTGATACAAGCAAATAACATAACACATATAATCAATTTGGGAG
GACATTTGTATCATAATCAACACCGCGCCGTCAAGTACTTGTCTCTAAGC
GTGCGTGACGATGTGCTGGAGAGGATTGATGATTTTTTCGATGTCTGTAT
AGACTTCATAACTGACGCTAAACAAAGCGATGGCGCGTGTGTTGTGGCAT
GCACTCAAGGAATCTCGAGAAGTGGCGCAATCGCAGTAGCATACCTGATG
AGCATGGATAATATAACCGTGGAAGAAGCATTGAGAAAGGTTCGGAAGAA
CCGTCCAATCATCGCACCAAATAGCGCGTTTCTCAACCAACTTTGCGAAT
ATGAACGGCGTCTGAAAGGAGGGCGGGCGAGTACTTGGGTGGGGAGAGTG
AGTTATGTAGGAAGCGTGGACAAGGTATTGGTGGCAAGAAGTATAGGTGA
AGGCGAAGTGGATTGTATCGATGACGATGTTTTCATTATTGAAAAAGGCG
AAATGATGGGGATTGTGGTGTGGAAAGGAAGAAGAGCGAGGGAAAGCGTG
TGGAAGGAGGCCATCAGAATTGCGAACCGAATGGCGAATCGGGTGCGAAG
GGATTGCGAGCGAAGGGGGTTGAAGGCGCCCTTCGACGCGGCACAGCTCT
GCGTTGGAGGACGATGCGCTCCCCAAGTGGAGCAGACGCTTCGATCCGCT
ATGCAGCAGCGCTCGTAA
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protein sequence of Gchil458.t1

>Gchil458.t1 ID=Gchil458.t1|Name=Gchil458.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=356bp
MTTQTLGGMCSAADCEMKSSDAIRTAAISSQSLPDLELNESPEQKLNGAS
SLSCRNLSRRSSHPATDLPLLNLSALSEHVPIGDDLSTPRRNVERIGRSL
SRLKSYLYLGSKHTIRNASLIQANNITHIINLGGHLYHNQHRAVKYLSLS
VRDDVLERIDDFFDVCIDFITDAKQSDGACVVACTQGISRSGAIAVAYLM
SMDNITVEEALRKVRKNRPIIAPNSAFLNQLCEYERRLKGGRASTWVGRV
SYVGSVDKVLVARSIGEGEVDCIDDDVFIIEKGEMMGIVVWKGRRARESV
WKEAIRIANRMANRVRRDCERRGLKAPFDAAQLCVGGRCAPQVEQTLRSA
MQQRS*
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mRNA from alignment at tig00000060_pilon:302950..304017-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil458.t1 ID=Gchil458.t1|Name=Gchil458.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000060_pilon:302950..304017- (Gracilaria chilensis NLEC103_M9 male)
ATGACAACTCAAACCCTGGGCGGCATGTGTAGTGCCGCAGACTGTGAAAT
GAAAAGCAGTGATGCAATTCGAACGGCTGCCATTTCCTCGCAGAGCTTGC
CGGATTTGGAACTAAACGAAAGTCCTGAACAAAAGCTCAACGGTGCCTCT
TCTCTTTCGTGCCGAAACTTATCTCGTAGAAGTTCGCATCCTGCAACTGA
TTTGCCGTTGCTAAACTTGTCTGCTTTGTCGGAGCACGTTCCTATCGGGG
ATGACTTGAGCACACCACGTCGAAATGTAGAACGTATTGGGCGGTCACTG
TCGCGCTTGAAGAGCTATCTGTACCTTGGAAGCAAGCATACGATAAGAAA
CGCGTCATTGATACAAGCAAATAACATAACACATATAATCAATTTGGGAG
GACATTTGTATCATAATCAACACCGCGCCGTCAAGTACTTGTCTCTAAGC
GTGCGTGACGATGTGCTGGAGAGGATTGATGATTTTTTCGATGTCTGTAT
AGACTTCATAACTGACGCTAAACAAAGCGATGGCGCGTGTGTTGTGGCAT
GCACTCAAGGAATCTCGAGAAGTGGCGCAATCGCAGTAGCATACCTGATG
AGCATGGATAATATAACCGTGGAAGAAGCATTGAGAAAGGTTCGGAAGAA
CCGTCCAATCATCGCACCAAATAGCGCGTTTCTCAACCAACTTTGCGAAT
ATGAACGGCGTCTGAAAGGAGGGCGGGCGAGTACTTGGGTGGGGAGAGTG
AGTTATGTAGGAAGCGTGGACAAGGTATTGGTGGCAAGAAGTATAGGTGA
AGGCGAAGTGGATTGTATCGATGACGATGTTTTCATTATTGAAAAAGGCG
AAATGATGGGGATTGTGGTGTGGAAAGGAAGAAGAGCGAGGGAAAGCGTG
TGGAAGGAGGCCATCAGAATTGCGAACCGAATGGCGAATCGGGTGCGAAG
GGATTGCGAGCGAAGGGGGTTGAAGGCGCCCTTCGACGCGGCACAGCTCT
GCGTTGGAGGACGATGCGCTCCCCAAGTGGAGCAGACGCTTCGATCCGCT
ATGCAGCAGCGCTCGTAA
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Coding sequence (CDS) from alignment at tig00000060_pilon:302950..304017-

>Gchil458.t1 ID=Gchil458.t1|Name=Gchil458.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1068bp|location=Sequence derived from alignment at tig00000060_pilon:302950..304017- (Gracilaria chilensis NLEC103_M9 male)
ATGACAACTCAAACCCTGGGCGGCATGTGTAGTGCCGCAGACTGTGAAAT
GAAAAGCAGTGATGCAATTCGAACGGCTGCCATTTCCTCGCAGAGCTTGC
CGGATTTGGAACTAAACGAAAGTCCTGAACAAAAGCTCAACGGTGCCTCT
TCTCTTTCGTGCCGAAACTTATCTCGTAGAAGTTCGCATCCTGCAACTGA
TTTGCCGTTGCTAAACTTGTCTGCTTTGTCGGAGCACGTTCCTATCGGGG
ATGACTTGAGCACACCACGTCGAAATGTAGAACGTATTGGGCGGTCACTG
TCGCGCTTGAAGAGCTATCTGTACCTTGGAAGCAAGCATACGATAAGAAA
CGCGTCATTGATACAAGCAAATAACATAACACATATAATCAATTTGGGAG
GACATTTGTATCATAATCAACACCGCGCCGTCAAGTACTTGTCTCTAAGC
GTGCGTGACGATGTGCTGGAGAGGATTGATGATTTTTTCGATGTCTGTAT
AGACTTCATAACTGACGCTAAACAAAGCGATGGCGCGTGTGTTGTGGCAT
GCACTCAAGGAATCTCGAGAAGTGGCGCAATCGCAGTAGCATACCTGATG
AGCATGGATAATATAACCGTGGAAGAAGCATTGAGAAAGGTTCGGAAGAA
CCGTCCAATCATCGCACCAAATAGCGCGTTTCTCAACCAACTTTGCGAAT
ATGAACGGCGTCTGAAAGGAGGGCGGGCGAGTACTTGGGTGGGGAGAGTG
AGTTATGTAGGAAGCGTGGACAAGGTATTGGTGGCAAGAAGTATAGGTGA
AGGCGAAGTGGATTGTATCGATGACGATGTTTTCATTATTGAAAAAGGCG
AAATGATGGGGATTGTGGTGTGGAAAGGAAGAAGAGCGAGGGAAAGCGTG
TGGAAGGAGGCCATCAGAATTGCGAACCGAATGGCGAATCGGGTGCGAAG
GGATTGCGAGCGAAGGGGGTTGAAGGCGCCCTTCGACGCGGCACAGCTCT
GCGTTGGAGGACGATGCGCTCCCCAAGTGGAGCAGACGCTTCGATCCGCT
ATGCAGCAGCGCTCGTAA
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