Gchil4572.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4572.t1
Unique NameGchil4572.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length400
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:1222335..1223534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38654.XP_006031808.1
Preferred nameCTDSP2
PFAMsNIF
Max annot lvl33208|Metazoa
KEGG koko:K15731
GOsGO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008420,GO:0009892,GO:0009987,GO:0010033,GO:0010563,GO:0010564,GO:0010605,GO:0010948,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019220,GO:0019222,GO:0019538,GO:0023052,GO:0030968,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0033554,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036498,GO:0042221,GO:0042325,GO:0042326,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045786,GO:0045930,GO:0045936,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070887,GO:0071310,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902806,GO:1902807,GO:2000045,GO:2000134
Evalue2.31e-59
EggNOG OGsCOG5190@1|root,KOG1605@2759|Eukaryota,38D0R@33154|Opisthokonta,3BGZ7@33208|Metazoa,3E48M@33213|Bilateria,48QXK@7711|Chordata,49MHI@7742|Vertebrata
EC3.1.3.16
DescriptionRNA polymerase II CTD heptapeptide repeat phosphatase activity
COG categoryK
BRITEko00000,ko01000,ko01009,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4572Gchil4572Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 1222335..1223534 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4572.t1.stop1Gchil4572.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 1222335..1222337 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4572.t1.CDS1Gchil4572.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 1222335..1223534 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4572.t1.exon1Gchil4572.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 1222335..1223534 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4572.t1.start1Gchil4572.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 1223532..1223534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4572.t1Gchil4572.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 1222335..1223534 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4572.t1 ID=Gchil4572.t1|Name=Gchil4572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=400bp
MNQSPDAAAKAASPAPKVATPTDPLTSSSTSTHSDTVAPEPVAPNQAASL
SNTPPCQLSAENSRESFAEPSNSASRTPSSQSEDGDTVVDDPPTKHPISP
AAVVQPPPTTLNVIHSVPNPSSVPPLSPLSDVTAPTPRSGLFSIFSPRND
KSMSPLRRLFSPRWFSSAPVDHQTESTVTTAPRRRNLACCFVRPQTLDES
LPDFDYVEQIRHLEPTYEPEPPLLPDPSQHAQDKICLVLDLDETLVHSSF
TPLPSADFEIPLDMQGETHTVYVKKRPGVDKFLKKASEWFEIVIFTASLA
LYANPVVDLLDPHNLVELRLYREHCVLIGGCYVKDIAKLGRDLRRTVIID
NSPLSYVLQPENAIPISAFFTDEDDRELEKTLDLLEQARNLEDIRKALT*
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spliced messenger RNA

>Gchil4572.t1 ID=Gchil4572.t1|Name=Gchil4572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00004426_pilon:1222335..1223534- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCAATCGCCCGACGCGGCTGCTAAAGCCGCATCCCCAGCCCCCAA
AGTGGCCACCCCCACCGATCCGTTGACCTCGTCTTCCACCTCCACGCACA
GTGATACCGTTGCACCCGAACCTGTCGCGCCCAACCAAGCCGCAAGCCTT
TCCAACACTCCACCCTGCCAGCTTTCCGCGGAGAACAGCCGCGAATCGTT
TGCCGAACCTTCCAACTCCGCTTCCAGGACACCATCTTCCCAGTCTGAAG
ATGGCGACACTGTTGTCGATGACCCTCCCACCAAACATCCCATCTCGCCT
GCAGCTGTCGTTCAACCTCCACCGACCACACTCAATGTCATTCACTCAGT
TCCAAATCCGTCGTCCGTGCCCCCTCTTTCGCCTTTGTCTGATGTCACTG
CCCCAACCCCTCGCTCGGGCCTGTTTTCGATCTTTTCCCCCCGTAATGAC
AAGTCTATGTCACCGCTACGCAGGCTCTTTTCTCCACGCTGGTTCAGCTC
GGCCCCTGTTGACCACCAAACAGAGTCTACAGTGACAACTGCTCCGCGGA
GAAGGAACCTTGCATGTTGTTTTGTTCGTCCCCAAACGTTGGACGAGTCG
CTGCCGGATTTCGACTACGTTGAACAGATTAGACACCTCGAACCCACGTA
TGAGCCGGAGCCACCACTTCTTCCCGACCCTTCACAACACGCCCAGGATA
AAATATGCCTTGTTCTTGACCTTGACGAAACACTTGTGCACAGCAGCTTT
ACGCCCTTGCCCAGTGCCGACTTTGAGATTCCCCTGGACATGCAAGGTGA
AACGCACACTGTATATGTTAAGAAGCGCCCAGGAGTTGACAAGTTTCTTA
AGAAGGCCAGCGAATGGTTTGAGATTGTCATCTTTACTGCATCTCTGGCC
TTGTACGCTAATCCAGTTGTGGACCTGCTTGATCCTCACAATTTGGTTGA
GTTGAGACTCTACCGAGAACACTGTGTTCTCATCGGAGGGTGTTACGTGA
AGGACATTGCAAAACTTGGTCGCGATTTGAGGAGAACCGTCATCATTGAC
AACAGCCCATTGAGTTACGTGCTTCAGCCGGAAAATGCCATTCCGATATC
AGCTTTTTTCACGGATGAAGATGACAGAGAGCTTGAGAAGACATTAGATC
TGCTTGAACAAGCTAGAAATCTTGAGGATATCAGAAAAGCACTTACATAA
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protein sequence of Gchil4572.t1

>Gchil4572.t1 ID=Gchil4572.t1|Name=Gchil4572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=400bp
MNQSPDAAAKAASPAPKVATPTDPLTSSSTSTHSDTVAPEPVAPNQAASL
SNTPPCQLSAENSRESFAEPSNSASRTPSSQSEDGDTVVDDPPTKHPISP
AAVVQPPPTTLNVIHSVPNPSSVPPLSPLSDVTAPTPRSGLFSIFSPRND
KSMSPLRRLFSPRWFSSAPVDHQTESTVTTAPRRRNLACCFVRPQTLDES
LPDFDYVEQIRHLEPTYEPEPPLLPDPSQHAQDKICLVLDLDETLVHSSF
TPLPSADFEIPLDMQGETHTVYVKKRPGVDKFLKKASEWFEIVIFTASLA
LYANPVVDLLDPHNLVELRLYREHCVLIGGCYVKDIAKLGRDLRRTVIID
NSPLSYVLQPENAIPISAFFTDEDDRELEKTLDLLEQARNLEDIRKALT*
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mRNA from alignment at tig00004426_pilon:1222335..1223534-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4572.t1 ID=Gchil4572.t1|Name=Gchil4572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00004426_pilon:1222335..1223534- (Gracilaria chilensis NLEC103_M9 male)
ATGAACCAATCGCCCGACGCGGCTGCTAAAGCCGCATCCCCAGCCCCCAA
AGTGGCCACCCCCACCGATCCGTTGACCTCGTCTTCCACCTCCACGCACA
GTGATACCGTTGCACCCGAACCTGTCGCGCCCAACCAAGCCGCAAGCCTT
TCCAACACTCCACCCTGCCAGCTTTCCGCGGAGAACAGCCGCGAATCGTT
TGCCGAACCTTCCAACTCCGCTTCCAGGACACCATCTTCCCAGTCTGAAG
ATGGCGACACTGTTGTCGATGACCCTCCCACCAAACATCCCATCTCGCCT
GCAGCTGTCGTTCAACCTCCACCGACCACACTCAATGTCATTCACTCAGT
TCCAAATCCGTCGTCCGTGCCCCCTCTTTCGCCTTTGTCTGATGTCACTG
CCCCAACCCCTCGCTCGGGCCTGTTTTCGATCTTTTCCCCCCGTAATGAC
AAGTCTATGTCACCGCTACGCAGGCTCTTTTCTCCACGCTGGTTCAGCTC
GGCCCCTGTTGACCACCAAACAGAGTCTACAGTGACAACTGCTCCGCGGA
GAAGGAACCTTGCATGTTGTTTTGTTCGTCCCCAAACGTTGGACGAGTCG
CTGCCGGATTTCGACTACGTTGAACAGATTAGACACCTCGAACCCACGTA
TGAGCCGGAGCCACCACTTCTTCCCGACCCTTCACAACACGCCCAGGATA
AAATATGCCTTGTTCTTGACCTTGACGAAACACTTGTGCACAGCAGCTTT
ACGCCCTTGCCCAGTGCCGACTTTGAGATTCCCCTGGACATGCAAGGTGA
AACGCACACTGTATATGTTAAGAAGCGCCCAGGAGTTGACAAGTTTCTTA
AGAAGGCCAGCGAATGGTTTGAGATTGTCATCTTTACTGCATCTCTGGCC
TTGTACGCTAATCCAGTTGTGGACCTGCTTGATCCTCACAATTTGGTTGA
GTTGAGACTCTACCGAGAACACTGTGTTCTCATCGGAGGGTGTTACGTGA
AGGACATTGCAAAACTTGGTCGCGATTTGAGGAGAACCGTCATCATTGAC
AACAGCCCATTGAGTTACGTGCTTCAGCCGGAAAATGCCATTCCGATATC
AGCTTTTTTCACGGATGAAGATGACAGAGAGCTTGAGAAGACATTAGATC
TGCTTGAACAAGCTAGAAATCTTGAGGATATCAGAAAAGCACTTACATAA
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Coding sequence (CDS) from alignment at tig00004426_pilon:1222335..1223534-

>Gchil4572.t1 ID=Gchil4572.t1|Name=Gchil4572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1200bp|location=Sequence derived from alignment at tig00004426_pilon:1222335..1223534- (Gracilaria chilensis NLEC103_M9 male)
ATGAACCAATCGCCCGACGCGGCTGCTAAAGCCGCATCCCCAGCCCCCAA
AGTGGCCACCCCCACCGATCCGTTGACCTCGTCTTCCACCTCCACGCACA
GTGATACCGTTGCACCCGAACCTGTCGCGCCCAACCAAGCCGCAAGCCTT
TCCAACACTCCACCCTGCCAGCTTTCCGCGGAGAACAGCCGCGAATCGTT
TGCCGAACCTTCCAACTCCGCTTCCAGGACACCATCTTCCCAGTCTGAAG
ATGGCGACACTGTTGTCGATGACCCTCCCACCAAACATCCCATCTCGCCT
GCAGCTGTCGTTCAACCTCCACCGACCACACTCAATGTCATTCACTCAGT
TCCAAATCCGTCGTCCGTGCCCCCTCTTTCGCCTTTGTCTGATGTCACTG
CCCCAACCCCTCGCTCGGGCCTGTTTTCGATCTTTTCCCCCCGTAATGAC
AAGTCTATGTCACCGCTACGCAGGCTCTTTTCTCCACGCTGGTTCAGCTC
GGCCCCTGTTGACCACCAAACAGAGTCTACAGTGACAACTGCTCCGCGGA
GAAGGAACCTTGCATGTTGTTTTGTTCGTCCCCAAACGTTGGACGAGTCG
CTGCCGGATTTCGACTACGTTGAACAGATTAGACACCTCGAACCCACGTA
TGAGCCGGAGCCACCACTTCTTCCCGACCCTTCACAACACGCCCAGGATA
AAATATGCCTTGTTCTTGACCTTGACGAAACACTTGTGCACAGCAGCTTT
ACGCCCTTGCCCAGTGCCGACTTTGAGATTCCCCTGGACATGCAAGGTGA
AACGCACACTGTATATGTTAAGAAGCGCCCAGGAGTTGACAAGTTTCTTA
AGAAGGCCAGCGAATGGTTTGAGATTGTCATCTTTACTGCATCTCTGGCC
TTGTACGCTAATCCAGTTGTGGACCTGCTTGATCCTCACAATTTGGTTGA
GTTGAGACTCTACCGAGAACACTGTGTTCTCATCGGAGGGTGTTACGTGA
AGGACATTGCAAAACTTGGTCGCGATTTGAGGAGAACCGTCATCATTGAC
AACAGCCCATTGAGTTACGTGCTTCAGCCGGAAAATGCCATTCCGATATC
AGCTTTTTTCACGGATGAAGATGACAGAGAGCTTGAGAAGACATTAGATC
TGCTTGAACAAGCTAGAAATCTTGAGGATATCAGAAAAGCACTTACATAA
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