Gchil4561.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4561.t1
Unique NameGchil4561.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:1144555..1145325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4561Gchil4561Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 1144555..1145325 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4561.t1.start1Gchil4561.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 1144555..1144557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4561.t1.CDS1Gchil4561.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 1144555..1145325 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4561.t1.exon1Gchil4561.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 1144555..1145325 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4561.t1.stop1Gchil4561.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 1145323..1145325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4561.t1Gchil4561.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 1144555..1145325 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4561.t1 ID=Gchil4561.t1|Name=Gchil4561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=257bp
MGYGQYSYITDKTRGHAVQYYIDKFRVASDFSKRGPIDLADAKLGRDQKG
RVIVPAEGVPQEFDEALPPVDETAPPDPRIAEAEGKLYPWDPNYVDPSFA
PETYANMSDEEIADDAFQKFRSSVAEDRSSSLTAMDFGAVARQQRIRTGL
DEKYLLCLDGALDAVYARLQKISDPMMFTPYGEPQTEIPGFPYLPSVGAM
DFQDPPGLQVNFWTGEREVIPSYKKPSGAATPELPYNASPTVDEMKQAQE
ARGILP*
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spliced messenger RNA

>Gchil4561.t1 ID=Gchil4561.t1|Name=Gchil4561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00004426_pilon:1144555..1145325+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATATGGCCAATACAGCTACATCACGGACAAGACCAGAGGCCATGC
CGTTCAGTATTACATCGACAAATTTCGCGTAGCATCCGACTTTTCCAAGC
GCGGTCCTATTGACCTGGCAGACGCTAAACTCGGTCGGGATCAGAAGGGT
CGCGTCATTGTTCCGGCCGAGGGCGTCCCGCAAGAGTTCGACGAAGCCTT
ACCGCCTGTCGATGAAACCGCCCCTCCCGATCCCCGTATTGCCGAAGCAG
AAGGAAAACTTTATCCATGGGACCCAAACTATGTTGACCCCAGCTTCGCT
CCGGAAACCTACGCTAATATGAGCGATGAGGAAATTGCCGACGATGCATT
CCAGAAGTTCCGTTCTTCTGTTGCGGAGGACCGCTCTTCGTCTTTGACCG
CCATGGATTTTGGTGCTGTAGCGCGTCAGCAGCGTATTAGGACTGGTTTG
GACGAAAAGTATCTCCTGTGTCTGGATGGCGCTCTTGATGCTGTCTATGC
ACGCCTACAAAAAATCTCGGATCCCATGATGTTTACACCGTATGGGGAAC
CGCAGACCGAAATCCCCGGTTTCCCATACCTTCCTAGTGTAGGTGCAATG
GACTTCCAGGACCCCCCTGGATTACAGGTCAACTTCTGGACTGGAGAACG
TGAAGTAATCCCTTCCTACAAGAAACCATCGGGAGCAGCGACGCCAGAAC
TACCGTACAACGCCAGCCCAACCGTTGATGAGATGAAACAAGCTCAGGAG
GCGCGTGGTATTCTTCCTTAA
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protein sequence of Gchil4561.t1

>Gchil4561.t1 ID=Gchil4561.t1|Name=Gchil4561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=257bp
MGYGQYSYITDKTRGHAVQYYIDKFRVASDFSKRGPIDLADAKLGRDQKG
RVIVPAEGVPQEFDEALPPVDETAPPDPRIAEAEGKLYPWDPNYVDPSFA
PETYANMSDEEIADDAFQKFRSSVAEDRSSSLTAMDFGAVARQQRIRTGL
DEKYLLCLDGALDAVYARLQKISDPMMFTPYGEPQTEIPGFPYLPSVGAM
DFQDPPGLQVNFWTGEREVIPSYKKPSGAATPELPYNASPTVDEMKQAQE
ARGILP*
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mRNA from alignment at tig00004426_pilon:1144555..1145325+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4561.t1 ID=Gchil4561.t1|Name=Gchil4561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00004426_pilon:1144555..1145325+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGATATGGCCAATACAGCTACATCACGGACAAGACCAGAGGCCATGC
CGTTCAGTATTACATCGACAAATTTCGCGTAGCATCCGACTTTTCCAAGC
GCGGTCCTATTGACCTGGCAGACGCTAAACTCGGTCGGGATCAGAAGGGT
CGCGTCATTGTTCCGGCCGAGGGCGTCCCGCAAGAGTTCGACGAAGCCTT
ACCGCCTGTCGATGAAACCGCCCCTCCCGATCCCCGTATTGCCGAAGCAG
AAGGAAAACTTTATCCATGGGACCCAAACTATGTTGACCCCAGCTTCGCT
CCGGAAACCTACGCTAATATGAGCGATGAGGAAATTGCCGACGATGCATT
CCAGAAGTTCCGTTCTTCTGTTGCGGAGGACCGCTCTTCGTCTTTGACCG
CCATGGATTTTGGTGCTGTAGCGCGTCAGCAGCGTATTAGGACTGGTTTG
GACGAAAAGTATCTCCTGTGTCTGGATGGCGCTCTTGATGCTGTCTATGC
ACGCCTACAAAAAATCTCGGATCCCATGATGTTTACACCGTATGGGGAAC
CGCAGACCGAAATCCCCGGTTTCCCATACCTTCCTAGTGTAGGTGCAATG
GACTTCCAGGACCCCCCTGGATTACAGGTCAACTTCTGGACTGGAGAACG
TGAAGTAATCCCTTCCTACAAGAAACCATCGGGAGCAGCGACGCCAGAAC
TACCGTACAACGCCAGCCCAACCGTTGATGAGATGAAACAAGCTCAGGAG
GCGCGTGGTATTCTTCCTTAA
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Coding sequence (CDS) from alignment at tig00004426_pilon:1144555..1145325+

>Gchil4561.t1 ID=Gchil4561.t1|Name=Gchil4561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=771bp|location=Sequence derived from alignment at tig00004426_pilon:1144555..1145325+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGATATGGCCAATACAGCTACATCACGGACAAGACCAGAGGCCATGC
CGTTCAGTATTACATCGACAAATTTCGCGTAGCATCCGACTTTTCCAAGC
GCGGTCCTATTGACCTGGCAGACGCTAAACTCGGTCGGGATCAGAAGGGT
CGCGTCATTGTTCCGGCCGAGGGCGTCCCGCAAGAGTTCGACGAAGCCTT
ACCGCCTGTCGATGAAACCGCCCCTCCCGATCCCCGTATTGCCGAAGCAG
AAGGAAAACTTTATCCATGGGACCCAAACTATGTTGACCCCAGCTTCGCT
CCGGAAACCTACGCTAATATGAGCGATGAGGAAATTGCCGACGATGCATT
CCAGAAGTTCCGTTCTTCTGTTGCGGAGGACCGCTCTTCGTCTTTGACCG
CCATGGATTTTGGTGCTGTAGCGCGTCAGCAGCGTATTAGGACTGGTTTG
GACGAAAAGTATCTCCTGTGTCTGGATGGCGCTCTTGATGCTGTCTATGC
ACGCCTACAAAAAATCTCGGATCCCATGATGTTTACACCGTATGGGGAAC
CGCAGACCGAAATCCCCGGTTTCCCATACCTTCCTAGTGTAGGTGCAATG
GACTTCCAGGACCCCCCTGGATTACAGGTCAACTTCTGGACTGGAGAACG
TGAAGTAATCCCTTCCTACAAGAAACCATCGGGAGCAGCGACGCCAGAAC
TACCGTACAACGCCAGCCCAACCGTTGATGAGATGAAACAAGCTCAGGAG
GCGCGTGGTATTCTTCCTTAA
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