Gchil456.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil456.t1
Unique Name	Gchil456.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	563

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000060_pilon	contig	tig00000060_pilon:297691..299379 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703605.1
Preferred name	MPK17
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00003,RC00060,RC00181,RC00496
KEGG ko	ko:K04371,ko:K11430,ko:K13105,ko:K19603,ko:K20290,ko:K20538,ko:K22312
KEGG Reaction	R03875,R03938,R04866,R04867
KEGG Pathway	ko00310,ko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04016,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04114,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05202,ko05203,ko05205,ko05206,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map00310,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04016,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04114,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05202,map05203,map05205,map05206,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG Module	M00687
GOs	GO:0000165,GO:0000226,GO:0000302,GO:0001101,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004707,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005773,GO:0005829,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009611,GO:0009636,GO:0009719,GO:0009725,GO:0009737,GO:0009738,GO:0009753,GO:0009755,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010638,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019222,GO:0019538,GO:0023014,GO:0023052,GO:0030865,GO:0031122,GO:0032870,GO:0033043,GO:0033993,GO:0035556,GO:0036211,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043622,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046777,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071495,GO:0071704,GO:0071840,GO:0071944,GO:0097305,GO:0097306,GO:0097435,GO:0140096,GO:1900063,GO:1900064,GO:1901564,GO:1901700,GO:1901701
Evalue	6.67e-153
EggNOG OGs	KOG0660@1\|root,KOG0660@2759\|Eukaryota
EC	2.1.1.43,2.7.11.24,2.8.2.39
Description	MAP kinase activity
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko03041,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil456	Gchil456	Gracilaria chilensis NLEC103_M9 male	gene	tig00000060_pilon 297691..299379 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil456.t1.stop1	Gchil456.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000060_pilon 297691..297693 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil456.t1.CDS1	Gchil456.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000060_pilon 297691..299379 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil456.t1.exon1	Gchil456.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000060_pilon 297691..299379 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil456.t1.start1	Gchil456.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000060_pilon 299377..299379 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil456.t1	Gchil456.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000060_pilon 297691..299379 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000060_pilon:297691..299379-
coding sequence from alignment at tig00000060_pilon:297691..299379-

mRNA sequence

>Gchil456.t1 ID=Gchil456.t1|Name=Gchil456.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=563bp
MERPRNEEERRRLLERLKEEFFLPPLLEHKYKLEQVIGEGSYGIVCSAVN
TETGEKVAVKRIMRVFEEAPEAKRTLRELKFLRLLKNHDNIISIKDVLLP
SDRDRFDDVFVVLELMPTDLMRVLRSRIELSPDHVRWLVFQLIRGIFFIH
TSRVFHRDLKPSNILINARCDLRIVDFGLSRAAFDNQEPDAIFWTDYVAT
RWYRAPELIMASNTNYTTAIDMWSVGCIFAEMLNNGRAIFPGQNPEDQLH
RIINVCGTPTPEAVAAVREPHARALIARMPPRQRRPLIQLFPHVDPLALD
LLEKILEFDPAKRLSAEDALKHPYLRMDTATRGTPIDMDEFAFERRTHTI
QELRVLFLEEILKYHPEHRDLYLRPKPEPRLQYAPVDQAARFREAMIATQ
NGMDPPRAWESMPNQRLTTYYRDTKPHPPQHSETGSFVQRGVGGNGFMTA
TTDAENGVRNPDERARQARGPHVTVRTDGEASIGGRHTDLSPHGNTSHDE
EQQLLQYTQFGKMSSVDSATSTFNPDSSQLGPPVVRRVSETVDSMNDVNR
EMMMDAASSEVG*

spliced messenger RNA

>Gchil456.t1 ID=Gchil456.t1|Name=Gchil456.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1689bp|location=Sequence derived from alignment at tig00000060_pilon:297691..299379- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGACCGCGCAACGAGGAGGAAAGACGTCGCCTCCTCGAGCGTCT
CAAGGAAGAGTTCTTCCTTCCCCCTCTGTTGGAACACAAGTACAAACTCG
AACAAGTCATAGGCGAAGGCAGCTATGGAATCGTCTGTTCTGCCGTCAAC
ACTGAAACCGGTGAGAAGGTCGCCGTCAAACGCATCATGCGCGTGTTCGA
AGAAGCACCCGAGGCAAAACGCACACTTCGTGAGCTCAAGTTTCTTCGAC
TGTTGAAAAACCACGATAATATTATTTCCATCAAGGACGTCCTCCTTCCG
TCCGACCGCGACCGCTTTGATGATGTTTTCGTCGTGCTTGAGCTTATGCC
TACTGACCTCATGCGTGTACTGCGTTCGCGCATAGAACTCTCGCCAGACC
ATGTCCGTTGGCTTGTGTTCCAACTTATTCGTGGTATCTTTTTTATTCAC
ACCTCTCGTGTATTTCATCGGGACCTCAAACCAAGCAACATTCTTATTAA
CGCTCGATGCGATTTGCGTATTGTCGACTTTGGACTATCCCGTGCTGCCT
TTGACAACCAGGAACCAGATGCCATATTCTGGACTGACTATGTCGCTACG
CGATGGTATCGAGCCCCAGAACTCATCATGGCATCCAATACAAACTACAC
CACCGCCATTGACATGTGGTCCGTAGGTTGCATCTTTGCCGAGATGCTCA
ACAACGGTCGTGCTATCTTTCCTGGTCAAAACCCGGAAGATCAACTTCAT
AGAATCATCAATGTGTGCGGCACACCTACGCCAGAGGCTGTCGCTGCCGT
CCGCGAACCTCATGCTCGCGCTTTAATAGCTCGAATGCCTCCAAGACAAC
GAAGACCTCTGATTCAACTATTCCCTCATGTTGATCCTTTGGCACTTGAT
CTTCTAGAGAAGATTCTTGAATTTGACCCTGCGAAACGGCTTAGTGCCGA
GGACGCGTTGAAACATCCGTATTTACGAATGGATACTGCCACAAGGGGTA
CACCCATCGACATGGACGAATTTGCATTTGAAAGAAGAACTCATACTATT
CAGGAGTTAAGAGTACTTTTCTTGGAAGAGATTCTCAAATACCACCCAGA
ACATCGCGATTTGTATTTGCGACCAAAACCGGAACCACGTCTGCAGTATG
CTCCTGTCGATCAGGCCGCTCGATTCCGCGAAGCTATGATTGCTACCCAG
AACGGAATGGATCCCCCTCGCGCATGGGAATCAATGCCCAATCAGAGACT
GACTACTTACTATCGTGATACCAAACCCCATCCGCCTCAACATAGCGAGA
CTGGAAGCTTCGTACAGAGAGGCGTAGGAGGTAACGGTTTCATGACTGCC
ACTACGGACGCAGAAAATGGTGTTCGTAATCCTGACGAACGAGCTCGTCA
AGCTCGTGGACCGCACGTCACAGTGCGCACTGATGGCGAGGCTTCGATTG
GAGGTCGTCATACTGATCTTTCACCACATGGTAATACAAGTCATGATGAA
GAGCAGCAGCTTTTGCAGTATACGCAATTTGGAAAAATGTCCAGTGTAGA
TAGTGCGACTTCGACTTTCAACCCGGATTCATCTCAGCTGGGTCCACCAG
TTGTTCGAAGGGTTAGTGAGACAGTTGATAGTATGAACGATGTGAATCGA
GAAATGATGATGGATGCTGCGAGCAGCGAAGTGGGGTGA

protein sequence of Gchil456.t1

>Gchil456.t1 ID=Gchil456.t1|Name=Gchil456.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=563bp
MERPRNEEERRRLLERLKEEFFLPPLLEHKYKLEQVIGEGSYGIVCSAVN
TETGEKVAVKRIMRVFEEAPEAKRTLRELKFLRLLKNHDNIISIKDVLLP
SDRDRFDDVFVVLELMPTDLMRVLRSRIELSPDHVRWLVFQLIRGIFFIH
TSRVFHRDLKPSNILINARCDLRIVDFGLSRAAFDNQEPDAIFWTDYVAT
RWYRAPELIMASNTNYTTAIDMWSVGCIFAEMLNNGRAIFPGQNPEDQLH
RIINVCGTPTPEAVAAVREPHARALIARMPPRQRRPLIQLFPHVDPLALD
LLEKILEFDPAKRLSAEDALKHPYLRMDTATRGTPIDMDEFAFERRTHTI
QELRVLFLEEILKYHPEHRDLYLRPKPEPRLQYAPVDQAARFREAMIATQ
NGMDPPRAWESMPNQRLTTYYRDTKPHPPQHSETGSFVQRGVGGNGFMTA
TTDAENGVRNPDERARQARGPHVTVRTDGEASIGGRHTDLSPHGNTSHDE
EQQLLQYTQFGKMSSVDSATSTFNPDSSQLGPPVVRRVSETVDSMNDVNR
EMMMDAASSEVG*

mRNA from alignment at tig00000060_pilon:297691..299379-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil456.t1 ID=Gchil456.t1|Name=Gchil456.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1689bp|location=Sequence derived from alignment at tig00000060_pilon:297691..299379- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCGACCGCGCAACGAGGAGGAAAGACGTCGCCTCCTCGAGCGTCT
CAAGGAAGAGTTCTTCCTTCCCCCTCTGTTGGAACACAAGTACAAACTCG
AACAAGTCATAGGCGAAGGCAGCTATGGAATCGTCTGTTCTGCCGTCAAC
ACTGAAACCGGTGAGAAGGTCGCCGTCAAACGCATCATGCGCGTGTTCGA
AGAAGCACCCGAGGCAAAACGCACACTTCGTGAGCTCAAGTTTCTTCGAC
TGTTGAAAAACCACGATAATATTATTTCCATCAAGGACGTCCTCCTTCCG
TCCGACCGCGACCGCTTTGATGATGTTTTCGTCGTGCTTGAGCTTATGCC
TACTGACCTCATGCGTGTACTGCGTTCGCGCATAGAACTCTCGCCAGACC
ATGTCCGTTGGCTTGTGTTCCAACTTATTCGTGGTATCTTTTTTATTCAC
ACCTCTCGTGTATTTCATCGGGACCTCAAACCAAGCAACATTCTTATTAA
CGCTCGATGCGATTTGCGTATTGTCGACTTTGGACTATCCCGTGCTGCCT
TTGACAACCAGGAACCAGATGCCATATTCTGGACTGACTATGTCGCTACG
CGATGGTATCGAGCCCCAGAACTCATCATGGCATCCAATACAAACTACAC
CACCGCCATTGACATGTGGTCCGTAGGTTGCATCTTTGCCGAGATGCTCA
ACAACGGTCGTGCTATCTTTCCTGGTCAAAACCCGGAAGATCAACTTCAT
AGAATCATCAATGTGTGCGGCACACCTACGCCAGAGGCTGTCGCTGCCGT
CCGCGAACCTCATGCTCGCGCTTTAATAGCTCGAATGCCTCCAAGACAAC
GAAGACCTCTGATTCAACTATTCCCTCATGTTGATCCTTTGGCACTTGAT
CTTCTAGAGAAGATTCTTGAATTTGACCCTGCGAAACGGCTTAGTGCCGA
GGACGCGTTGAAACATCCGTATTTACGAATGGATACTGCCACAAGGGGTA
CACCCATCGACATGGACGAATTTGCATTTGAAAGAAGAACTCATACTATT
CAGGAGTTAAGAGTACTTTTCTTGGAAGAGATTCTCAAATACCACCCAGA
ACATCGCGATTTGTATTTGCGACCAAAACCGGAACCACGTCTGCAGTATG
CTCCTGTCGATCAGGCCGCTCGATTCCGCGAAGCTATGATTGCTACCCAG
AACGGAATGGATCCCCCTCGCGCATGGGAATCAATGCCCAATCAGAGACT
GACTACTTACTATCGTGATACCAAACCCCATCCGCCTCAACATAGCGAGA
CTGGAAGCTTCGTACAGAGAGGCGTAGGAGGTAACGGTTTCATGACTGCC
ACTACGGACGCAGAAAATGGTGTTCGTAATCCTGACGAACGAGCTCGTCA
AGCTCGTGGACCGCACGTCACAGTGCGCACTGATGGCGAGGCTTCGATTG
GAGGTCGTCATACTGATCTTTCACCACATGGTAATACAAGTCATGATGAA
GAGCAGCAGCTTTTGCAGTATACGCAATTTGGAAAAATGTCCAGTGTAGA
TAGTGCGACTTCGACTTTCAACCCGGATTCATCTCAGCTGGGTCCACCAG
TTGTTCGAAGGGTTAGTGAGACAGTTGATAGTATGAACGATGTGAATCGA
GAAATGATGATGGATGCTGCGAGCAGCGAAGTGGGGTGA

Coding sequence (CDS) from alignment at tig00000060_pilon:297691..299379-

>Gchil456.t1 ID=Gchil456.t1|Name=Gchil456.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1689bp|location=Sequence derived from alignment at tig00000060_pilon:297691..299379- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCGACCGCGCAACGAGGAGGAAAGACGTCGCCTCCTCGAGCGTCT
CAAGGAAGAGTTCTTCCTTCCCCCTCTGTTGGAACACAAGTACAAACTCG
AACAAGTCATAGGCGAAGGCAGCTATGGAATCGTCTGTTCTGCCGTCAAC
ACTGAAACCGGTGAGAAGGTCGCCGTCAAACGCATCATGCGCGTGTTCGA
AGAAGCACCCGAGGCAAAACGCACACTTCGTGAGCTCAAGTTTCTTCGAC
TGTTGAAAAACCACGATAATATTATTTCCATCAAGGACGTCCTCCTTCCG
TCCGACCGCGACCGCTTTGATGATGTTTTCGTCGTGCTTGAGCTTATGCC
TACTGACCTCATGCGTGTACTGCGTTCGCGCATAGAACTCTCGCCAGACC
ATGTCCGTTGGCTTGTGTTCCAACTTATTCGTGGTATCTTTTTTATTCAC
ACCTCTCGTGTATTTCATCGGGACCTCAAACCAAGCAACATTCTTATTAA
CGCTCGATGCGATTTGCGTATTGTCGACTTTGGACTATCCCGTGCTGCCT
TTGACAACCAGGAACCAGATGCCATATTCTGGACTGACTATGTCGCTACG
CGATGGTATCGAGCCCCAGAACTCATCATGGCATCCAATACAAACTACAC
CACCGCCATTGACATGTGGTCCGTAGGTTGCATCTTTGCCGAGATGCTCA
ACAACGGTCGTGCTATCTTTCCTGGTCAAAACCCGGAAGATCAACTTCAT
AGAATCATCAATGTGTGCGGCACACCTACGCCAGAGGCTGTCGCTGCCGT
CCGCGAACCTCATGCTCGCGCTTTAATAGCTCGAATGCCTCCAAGACAAC
GAAGACCTCTGATTCAACTATTCCCTCATGTTGATCCTTTGGCACTTGAT
CTTCTAGAGAAGATTCTTGAATTTGACCCTGCGAAACGGCTTAGTGCCGA
GGACGCGTTGAAACATCCGTATTTACGAATGGATACTGCCACAAGGGGTA
CACCCATCGACATGGACGAATTTGCATTTGAAAGAAGAACTCATACTATT
CAGGAGTTAAGAGTACTTTTCTTGGAAGAGATTCTCAAATACCACCCAGA
ACATCGCGATTTGTATTTGCGACCAAAACCGGAACCACGTCTGCAGTATG
CTCCTGTCGATCAGGCCGCTCGATTCCGCGAAGCTATGATTGCTACCCAG
AACGGAATGGATCCCCCTCGCGCATGGGAATCAATGCCCAATCAGAGACT
GACTACTTACTATCGTGATACCAAACCCCATCCGCCTCAACATAGCGAGA
CTGGAAGCTTCGTACAGAGAGGCGTAGGAGGTAACGGTTTCATGACTGCC
ACTACGGACGCAGAAAATGGTGTTCGTAATCCTGACGAACGAGCTCGTCA
AGCTCGTGGACCGCACGTCACAGTGCGCACTGATGGCGAGGCTTCGATTG
GAGGTCGTCATACTGATCTTTCACCACATGGTAATACAAGTCATGATGAA
GAGCAGCAGCTTTTGCAGTATACGCAATTTGGAAAAATGTCCAGTGTAGA
TAGTGCGACTTCGACTTTCAACCCGGATTCATCTCAGCTGGGTCCACCAG
TTGTTCGAAGGGTTAGTGAGACAGTTGATAGTATGAACGATGTGAATCGA
GAAATGATGATGGATGCTGCGAGCAGCGAAGTGGGGTGA