Gchil4542.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4542.t1
Unique NameGchil4542.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length175
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:927476..928000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4542Gchil4542Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 927476..928000 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4542.t1.start1Gchil4542.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 927476..927478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4542.t1.CDS1Gchil4542.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 927476..928000 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4542.t1.exon1Gchil4542.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 927476..928000 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4542.t1.stop1Gchil4542.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 927998..928000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4542.t1Gchil4542.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 927476..928000 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4542.t1 ID=Gchil4542.t1|Name=Gchil4542.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=175bp
MTLGKLEDAEMIARMTEWNDIEAWDYSEDEESSAENNLAAAKRFLAAQSF
LLSWQEGKVPTRWRRPRKLTDFDGKYPKSVVDEAEDIIAERIAVRNLEKT
ARLNAVLSARKSDSLGDGGKTRDAVQKKTELDALKTDFAAFNTDFFEAKN
CLTKATSSIADISFRIQALSEFLK*
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spliced messenger RNA

>Gchil4542.t1 ID=Gchil4542.t1|Name=Gchil4542.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00004426_pilon:927476..928000+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTAGGAAAACTAGAAGACGCAGAAATGATCGCACGCATGACGGA
ATGGAATGACATCGAAGCTTGGGATTACTCAGAAGACGAGGAGTCATCCG
CAGAGAACAATCTCGCAGCTGCGAAGCGCTTTCTTGCTGCACAATCGTTC
CTGCTGTCGTGGCAAGAGGGAAAAGTACCAACAAGGTGGCGCAGACCTCG
AAAACTCACTGATTTTGACGGAAAATATCCAAAGTCTGTTGTGGATGAGG
CAGAGGATATTATTGCTGAACGAATTGCTGTGAGAAACTTGGAAAAGACA
GCTAGATTAAACGCTGTCCTATCTGCAAGGAAGAGCGACTCCCTCGGAGA
TGGTGGTAAAACGAGAGATGCAGTACAAAAGAAAACTGAACTAGATGCGC
TAAAGACTGACTTCGCCGCTTTCAATACCGATTTCTTCGAAGCCAAGAAC
TGTCTAACAAAGGCAACCTCGTCTATTGCAGACATCTCCTTTAGAATTCA
AGCTCTATCAGAGTTTCTCAAATGA
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protein sequence of Gchil4542.t1

>Gchil4542.t1 ID=Gchil4542.t1|Name=Gchil4542.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=175bp
MTLGKLEDAEMIARMTEWNDIEAWDYSEDEESSAENNLAAAKRFLAAQSF
LLSWQEGKVPTRWRRPRKLTDFDGKYPKSVVDEAEDIIAERIAVRNLEKT
ARLNAVLSARKSDSLGDGGKTRDAVQKKTELDALKTDFAAFNTDFFEAKN
CLTKATSSIADISFRIQALSEFLK*
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mRNA from alignment at tig00004426_pilon:927476..928000+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4542.t1 ID=Gchil4542.t1|Name=Gchil4542.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00004426_pilon:927476..928000+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTTTAGGAAAACTAGAAGACGCAGAAATGATCGCACGCATGACGGA
ATGGAATGACATCGAAGCTTGGGATTACTCAGAAGACGAGGAGTCATCCG
CAGAGAACAATCTCGCAGCTGCGAAGCGCTTTCTTGCTGCACAATCGTTC
CTGCTGTCGTGGCAAGAGGGAAAAGTACCAACAAGGTGGCGCAGACCTCG
AAAACTCACTGATTTTGACGGAAAATATCCAAAGTCTGTTGTGGATGAGG
CAGAGGATATTATTGCTGAACGAATTGCTGTGAGAAACTTGGAAAAGACA
GCTAGATTAAACGCTGTCCTATCTGCAAGGAAGAGCGACTCCCTCGGAGA
TGGTGGTAAAACGAGAGATGCAGTACAAAAGAAAACTGAACTAGATGCGC
TAAAGACTGACTTCGCCGCTTTCAATACCGATTTCTTCGAAGCCAAGAAC
TGTCTAACAAAGGCAACCTCGTCTATTGCAGACATCTCCTTTAGAATTCA
AGCTCTATCAGAGTTTCTCAAATGA
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Coding sequence (CDS) from alignment at tig00004426_pilon:927476..928000+

>Gchil4542.t1 ID=Gchil4542.t1|Name=Gchil4542.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=525bp|location=Sequence derived from alignment at tig00004426_pilon:927476..928000+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTTTAGGAAAACTAGAAGACGCAGAAATGATCGCACGCATGACGGA
ATGGAATGACATCGAAGCTTGGGATTACTCAGAAGACGAGGAGTCATCCG
CAGAGAACAATCTCGCAGCTGCGAAGCGCTTTCTTGCTGCACAATCGTTC
CTGCTGTCGTGGCAAGAGGGAAAAGTACCAACAAGGTGGCGCAGACCTCG
AAAACTCACTGATTTTGACGGAAAATATCCAAAGTCTGTTGTGGATGAGG
CAGAGGATATTATTGCTGAACGAATTGCTGTGAGAAACTTGGAAAAGACA
GCTAGATTAAACGCTGTCCTATCTGCAAGGAAGAGCGACTCCCTCGGAGA
TGGTGGTAAAACGAGAGATGCAGTACAAAAGAAAACTGAACTAGATGCGC
TAAAGACTGACTTCGCCGCTTTCAATACCGATTTCTTCGAAGCCAAGAAC
TGTCTAACAAAGGCAACCTCGTCTATTGCAGACATCTCCTTTAGAATTCA
AGCTCTATCAGAGTTTCTCAAATGA
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