Gchil4540.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4540.t1
Unique NameGchil4540.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length536
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:922080..923687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4540Gchil4540Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 922080..923687 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4540.t1.start1Gchil4540.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 922080..922082 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4540.t1.CDS1Gchil4540.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 922080..923687 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4540.t1.exon1Gchil4540.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 922080..923687 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4540.t1.stop1Gchil4540.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 923685..923687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4540.t1Gchil4540.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 922080..923687 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4540.t1 ID=Gchil4540.t1|Name=Gchil4540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=536bp
MDLNAHVANLPLRPITKNRAHPIMGRTSYRWSNFELKPPGSNLSVTDING
SRSTVASFRPDAPGYYRLNLAVKGHGVTYSDPINVFVFDLDDDAQLTAAQ
SLAASPEQQYYVIGCRFAKPTAEGNDNDTQHSQQSKRKMDIANLSSSSAA
PTRGAANQPTPTPAHSPAANASHPPAAWKRSKPNPRPASGPPNDRQPLPA
AHSRTMALASGEPASTPRGYDDNDDDDDDNVHDDDDDDDDDDDAVIGGGG
GYEDDDDEDLEGLESADDDDDDEHLGDPGGDDDDGGDDDGGDDDGGNDDQ
GAGDDDDGADDADGDGADDDPNQGDGQDDDDGSDDDENQEEIEIDEEEEI
TSDVDIDTADLPDPATIPQTGEDFEEEDTEMGKGGQEEGDDEEEEEEDDE
EEEGEEAGMYDEGEDPQQDNDGDDEDAEDDDEGRGDDEDADEELGGDDDQ
DQPKIPIHDDDNGENDDDDDDDDDDDDDEDDEDDDMMEEQEGQDHYPSAN
IQQEKNVETQYNDDNVGDNEEYEDVEVDNDDDGDE*
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spliced messenger RNA

>Gchil4540.t1 ID=Gchil4540.t1|Name=Gchil4540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00004426_pilon:922080..923687+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCTTAACGCACATGTGGCCAATCTTCCCCTGCGTCCCATCACAAA
GAACAGAGCGCACCCGATCATGGGTCGTACCTCGTACCGCTGGTCCAATT
TCGAGCTCAAGCCGCCCGGATCAAATTTGTCAGTCACCGATATCAATGGT
AGTCGCTCCACTGTGGCATCCTTCCGCCCGGACGCACCCGGCTACTACCG
ACTCAACCTGGCCGTCAAGGGTCATGGCGTCACATACTCTGATCCCATCA
ATGTGTTTGTGTTCGACCTTGACGATGACGCGCAGCTCACGGCAGCGCAG
TCTCTCGCCGCATCGCCTGAGCAGCAGTATTACGTAATTGGTTGCCGCTT
TGCAAAACCGACCGCAGAAGGTAATGACAATGACACACAGCACTCACAAC
AGTCGAAGAGAAAGATGGACATAGCGAATTTGTCGTCAAGCTCCGCCGCC
CCGACACGTGGCGCGGCCAACCAACCCACACCCACACCTGCACACTCCCC
TGCTGCCAATGCCTCACACCCCCCCGCTGCATGGAAACGCTCCAAACCAA
ATCCGCGCCCCGCTTCCGGTCCTCCCAACGACCGACAGCCGCTACCAGCC
GCCCACTCGCGCACTATGGCGCTCGCCTCTGGTGAACCCGCCTCCACTCC
GCGTGGATacgatgacaacgacgacgatgatgatgacaacgtgcatgatg
acgacgatgatgatgatgatgatgatgatgccgtcattggcggtggcggc
ggttacgaagacgatgacgacgaagacttggagggtttagaaagtgccga
tgatgatgacgatgatgaacatctgggcgatcctggcggcgatgatgatg
atggcggcgatgatgatggcggcgatgatgatggcggcaatgacgatcag
ggcgccggtgacgacgatgacggcgccgatgatgctgacggagacggtgc
tgatgacgatccgaatcaaggtgacggccaagatgacgacgatggaagtg
acgatgacgaaaaCCAGGAAGAAATTGAAATCGACGAAGAGGAAGAAATT
ACTTCCGACGTTGATATCGACACTGCCGACCTCCCAGATCCTGCTACTAT
TCCCCAAACTGGAGAAGATTTTGAAGAAGAGGATACTGAGATGGGCAAAG
GTGGCCaagaggaaggcgatgacgaggaggaggaggaggaagatgatgaa
gaagaagaaggagaagaagctggcatgtacgatgaaggtgaagatCCCCA
GCAAGATAatgacggcgatgacgaagacgctgaagatgacgatgaaggca
gaggggacgatgaagacgctgatgaagaactagggggagatgatgatcaa
gaccaaccaaagatcccaatacatgatgacgacaacggcgaaaatgatga
tgatgatgatgacgacgacgacgacgacgatgatgaagatgacgaagatg
atgacatgatggaggagcaagaaggTCAAGATCACTACCCATCTGCCAAT
ATACAACAAGAAAAGAACGTGGAAACTCAGTACAATGACGACAATGTTGG
CGATAATGAAGAGTACGAGGATGTAGAAGTAGACAATGATGACGACGGAG
ATGAATGA
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protein sequence of Gchil4540.t1

>Gchil4540.t1 ID=Gchil4540.t1|Name=Gchil4540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=536bp
MDLNAHVANLPLRPITKNRAHPIMGRTSYRWSNFELKPPGSNLSVTDING
SRSTVASFRPDAPGYYRLNLAVKGHGVTYSDPINVFVFDLDDDAQLTAAQ
SLAASPEQQYYVIGCRFAKPTAEGNDNDTQHSQQSKRKMDIANLSSSSAA
PTRGAANQPTPTPAHSPAANASHPPAAWKRSKPNPRPASGPPNDRQPLPA
AHSRTMALASGEPASTPRGYDDNDDDDDDNVHDDDDDDDDDDDAVIGGGG
GYEDDDDEDLEGLESADDDDDDEHLGDPGGDDDDGGDDDGGDDDGGNDDQ
GAGDDDDGADDADGDGADDDPNQGDGQDDDDGSDDDENQEEIEIDEEEEI
TSDVDIDTADLPDPATIPQTGEDFEEEDTEMGKGGQEEGDDEEEEEEDDE
EEEGEEAGMYDEGEDPQQDNDGDDEDAEDDDEGRGDDEDADEELGGDDDQ
DQPKIPIHDDDNGENDDDDDDDDDDDDDEDDEDDDMMEEQEGQDHYPSAN
IQQEKNVETQYNDDNVGDNEEYEDVEVDNDDDGDE*
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mRNA from alignment at tig00004426_pilon:922080..923687+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4540.t1 ID=Gchil4540.t1|Name=Gchil4540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00004426_pilon:922080..923687+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCTTAACGCACATGTGGCCAATCTTCCCCTGCGTCCCATCACAAA
GAACAGAGCGCACCCGATCATGGGTCGTACCTCGTACCGCTGGTCCAATT
TCGAGCTCAAGCCGCCCGGATCAAATTTGTCAGTCACCGATATCAATGGT
AGTCGCTCCACTGTGGCATCCTTCCGCCCGGACGCACCCGGCTACTACCG
ACTCAACCTGGCCGTCAAGGGTCATGGCGTCACATACTCTGATCCCATCA
ATGTGTTTGTGTTCGACCTTGACGATGACGCGCAGCTCACGGCAGCGCAG
TCTCTCGCCGCATCGCCTGAGCAGCAGTATTACGTAATTGGTTGCCGCTT
TGCAAAACCGACCGCAGAAGGTAATGACAATGACACACAGCACTCACAAC
AGTCGAAGAGAAAGATGGACATAGCGAATTTGTCGTCAAGCTCCGCCGCC
CCGACACGTGGCGCGGCCAACCAACCCACACCCACACCTGCACACTCCCC
TGCTGCCAATGCCTCACACCCCCCCGCTGCATGGAAACGCTCCAAACCAA
ATCCGCGCCCCGCTTCCGGTCCTCCCAACGACCGACAGCCGCTACCAGCC
GCCCACTCGCGCACTATGGCGCTCGCCTCTGGTGAACCCGCCTCCACTCC
GCGTGGATacgatgacaacgacgacgatgatgatgacaacgtgcatgatg
acgacgatgatgatgatgatgatgatgatgccgtcattggcggtggcggc
ggttacgaagacgatgacgacgaagacttggagggtttagaaagtgccga
tgatgatgacgatgatgaacatctgggcgatcctggcggcgatgatgatg
atggcggcgatgatgatggcggcgatgatgatggcggcaatgacgatcag
ggcgccggtgacgacgatgacggcgccgatgatgctgacggagacggtgc
tgatgacgatccgaatcaaggtgacggccaagatgacgacgatggaagtg
acgatgacgaaaaCCAGGAAGAAATTGAAATCGACGAAGAGGAAGAAATT
ACTTCCGACGTTGATATCGACACTGCCGACCTCCCAGATCCTGCTACTAT
TCCCCAAACTGGAGAAGATTTTGAAGAAGAGGATACTGAGATGGGCAAAG
GTGGCCaagaggaaggcgatgacgaggaggaggaggaggaagatgatgaa
gaagaagaaggagaagaagctggcatgtacgatgaaggtgaagatCCCCA
GCAAGATAatgacggcgatgacgaagacgctgaagatgacgatgaaggca
gaggggacgatgaagacgctgatgaagaactagggggagatgatgatcaa
gaccaaccaaagatcccaatacatgatgacgacaacggcgaaaatgatga
tgatgatgatgacgacgacgacgacgacgatgatgaagatgacgaagatg
atgacatgatggaggagcaagaaggTCAAGATCACTACCCATCTGCCAAT
ATACAACAAGAAAAGAACGTGGAAACTCAGTACAATGACGACAATGTTGG
CGATAATGAAGAGTACGAGGATGTAGAAGTAGACAATGATGACGACGGAG
ATGAATGA
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Coding sequence (CDS) from alignment at tig00004426_pilon:922080..923687+

>Gchil4540.t1 ID=Gchil4540.t1|Name=Gchil4540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1608bp|location=Sequence derived from alignment at tig00004426_pilon:922080..923687+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCTTAACGCACATGTGGCCAATCTTCCCCTGCGTCCCATCACAAA
GAACAGAGCGCACCCGATCATGGGTCGTACCTCGTACCGCTGGTCCAATT
TCGAGCTCAAGCCGCCCGGATCAAATTTGTCAGTCACCGATATCAATGGT
AGTCGCTCCACTGTGGCATCCTTCCGCCCGGACGCACCCGGCTACTACCG
ACTCAACCTGGCCGTCAAGGGTCATGGCGTCACATACTCTGATCCCATCA
ATGTGTTTGTGTTCGACCTTGACGATGACGCGCAGCTCACGGCAGCGCAG
TCTCTCGCCGCATCGCCTGAGCAGCAGTATTACGTAATTGGTTGCCGCTT
TGCAAAACCGACCGCAGAAGGTAATGACAATGACACACAGCACTCACAAC
AGTCGAAGAGAAAGATGGACATAGCGAATTTGTCGTCAAGCTCCGCCGCC
CCGACACGTGGCGCGGCCAACCAACCCACACCCACACCTGCACACTCCCC
TGCTGCCAATGCCTCACACCCCCCCGCTGCATGGAAACGCTCCAAACCAA
ATCCGCGCCCCGCTTCCGGTCCTCCCAACGACCGACAGCCGCTACCAGCC
GCCCACTCGCGCACTATGGCGCTCGCCTCTGGTGAACCCGCCTCCACTCC
GCGTGGATacgatgacaacgacgacgatgatgatgacaacgtgcatgatg
acgacgatgatgatgatgatgatgatgatgccgtcattggcggtggcggc
ggttacgaagacgatgacgacgaagacttggagggtttagaaagtgccga
tgatgatgacgatgatgaacatctgggcgatcctggcggcgatgatgatg
atggcggcgatgatgatggcggcgatgatgatggcggcaatgacgatcag
ggcgccggtgacgacgatgacggcgccgatgatgctgacggagacggtgc
tgatgacgatccgaatcaaggtgacggccaagatgacgacgatggaagtg
acgatgacgaaaaCCAGGAAGAAATTGAAATCGACGAAGAGGAAGAAATT
ACTTCCGACGTTGATATCGACACTGCCGACCTCCCAGATCCTGCTACTAT
TCCCCAAACTGGAGAAGATTTTGAAGAAGAGGATACTGAGATGGGCAAAG
GTGGCCaagaggaaggcgatgacgaggaggaggaggaggaagatgatgaa
gaagaagaaggagaagaagctggcatgtacgatgaaggtgaagatCCCCA
GCAAGATAatgacggcgatgacgaagacgctgaagatgacgatgaaggca
gaggggacgatgaagacgctgatgaagaactagggggagatgatgatcaa
gaccaaccaaagatcccaatacatgatgacgacaacggcgaaaatgatga
tgatgatgatgacgacgacgacgacgacgatgatgaagatgacgaagatg
atgacatgatggaggagcaagaaggTCAAGATCACTACCCATCTGCCAAT
ATACAACAAGAAAAGAACGTGGAAACTCAGTACAATGACGACAATGTTGG
CGATAATGAAGAGTACGAGGATGTAGAAGTAGACAATGATGACGACGGAG
ATGAATGA
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