Gchil4506.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4506.t1
Unique NameGchil4506.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:638318..639391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703162.1
Preferred nameAMT
PFAMsGCV_T,GCV_T_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00022,RC00069,RC00183,RC00360,RC02834
KEGG koko:K00605,ko:K05359
KEGG ReactionR00691,R01221,R01373,R02300,R04125
KEGG Pathwayko00260,ko00400,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00400,map00630,map00670,map01100,map01110,map01130,map01200,map01230
KEGG ModuleM00024,M00532
GOsGO:0001505,GO:0003674,GO:0003824,GO:0004047,GO:0005488,GO:0005504,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005829,GO:0005840,GO:0005960,GO:0006082,GO:0006520,GO:0006544,GO:0006546,GO:0006730,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008289,GO:0008483,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016054,GO:0016740,GO:0016741,GO:0016769,GO:0017144,GO:0019464,GO:0019752,GO:0019866,GO:0022626,GO:0031090,GO:0031405,GO:0031406,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031981,GO:0031984,GO:0032259,GO:0032991,GO:0033293,GO:0036094,GO:0042133,GO:0042135,GO:0042221,GO:0042737,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046395,GO:0046686,GO:0048037,GO:0048046,GO:0050662,GO:0050896,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1901681,GO:1902494,GO:1990204,GO:1990904
Evalue3.79e-135
EggNOG OGsCOG0404@1|root,KOG2770@2759|Eukaryota
EC2.1.2.10,4.2.1.51,4.2.1.91
Descriptionaminomethyltransferase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4506Gchil4506Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 638318..639391 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4506.t1.start1Gchil4506.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 638318..638320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4506.t1.CDS1Gchil4506.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 638318..639391 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4506.t1.exon1Gchil4506.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 638318..639391 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4506.t1.stop1Gchil4506.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 639389..639391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4506.t1Gchil4506.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 638318..639391 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4506.t1 ID=Gchil4506.t1|Name=Gchil4506.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=358bp
MVPFAGYSMPVQYPDGIKDSHLFVRSSAGLFDVSHMGQIVLHGTDRVRFL
EQLVVADVAAIQPTRAQLSVITTPEGGIIDDTIISNLGNSIGMVINGACK
DKDIAHIRQHMQAANANGMDVTLEILDNHQLLALQGPKAMTVMSQLVPDF
DFVKMPFMSCAPMSVGGVSCHVTRCGYTGEDGFELSVPAESTVQLFETLI
GREDVRPTGLGARDSLRLEAGLCLYGNDIDDTTSPVEAALTWTIGKRRRE
EGGFLGAETILKHLNEGITRRRMAFVLPKGAPARGGETLLNEDGESVGTV
TSGGFSPTLGMAIGMGYANKPFNKTGTKLNVQVRSRLNAVEVRKMPLVPS
RYYKVPE*
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spliced messenger RNA

>Gchil4506.t1 ID=Gchil4506.t1|Name=Gchil4506.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00004426_pilon:638318..639391+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCCTTCGCGGGCTACTCCATGCCGGTGCAGTACCCGGACGGAAT
CAAGGATTCGCACCTGTTTGTGCGCTCCTCGGCCGGCCTGTTTGATGTGT
CGCACATGGGGCAGATTGTGCTGCACGGCACTGATCGCGTGCGCTTTCTC
GAGCAACTGGTCGTCGCCGATGTGGCAGCCATCCAGCCGACTCGCGCACA
GCTGTCCGTCATTACCACCCCCGAGGGCGGCATTATCGATGATACTATCA
TCTCCAACCTGGGCAATTCTATTGGCATGGTCATCAATGGCGCTTGCAAG
GACAAGGACATAGCGCACATCAGACAGCATATGCAAGCCGCCAATGCCAA
TGGCATGGATGTCACTCTGGAGATTCTCGACAATCACCAACTGCTCGCCC
TACAGGGCCCGAAGGCCATGACGGTCATGTCGCAACTTGTGCCAGATTTC
GACTTTGTCAAGATGCCGTTCATGTCTTGCGCACCAATGAGTGTGGGCGG
AGTTTCGTGCCACGTGACACGTTGTGGATACACGGGTGAGGATGGCTTTG
AGTTGTCAGTGCCAGCTGAGAGCACTGTGCAATTGTTCGAAACGCTTATT
GGTCGGGAGGACGTGCGGCCAACTGGATTGGGCGCGCGCGATTCGCTGCG
GCTGGAGGCCGGACTGTGTCTGTACGGAAACGACATTGATGACACCACCT
CACCCGTGGAGGCTGCGCTGACGTGGACAATTGGGAAGAGGCGAAGAGAG
GAGGGTGGTTTCCTTGGCGCTGAGACCATTCTCAAGCATCTGAATGAAGG
CATTACTCGGCGAAGGATGGCATTTGTGTTGCCCAAGGGGGCGCCGGCTC
GTGGGGGGGAGACGCTACTGAACGAGGATGGAGAGAGCGTAGGCACAGTT
ACTAGTGGCGGTTTCAGCCCGACATTGGGAATGGCTATTGGAATGGGGTA
TGCCAACAAGCCGTTCAACAAGACGGGAACAAAGCTGAATGTGCAAGTTC
GGTCGCGCTTGAATGCGGTGGAGGTGCGAAAGATGCCCCTGGTACCAAGC
AGGTACTACAAGGTGCCCGAGTAG
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protein sequence of Gchil4506.t1

>Gchil4506.t1 ID=Gchil4506.t1|Name=Gchil4506.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=358bp
MVPFAGYSMPVQYPDGIKDSHLFVRSSAGLFDVSHMGQIVLHGTDRVRFL
EQLVVADVAAIQPTRAQLSVITTPEGGIIDDTIISNLGNSIGMVINGACK
DKDIAHIRQHMQAANANGMDVTLEILDNHQLLALQGPKAMTVMSQLVPDF
DFVKMPFMSCAPMSVGGVSCHVTRCGYTGEDGFELSVPAESTVQLFETLI
GREDVRPTGLGARDSLRLEAGLCLYGNDIDDTTSPVEAALTWTIGKRRRE
EGGFLGAETILKHLNEGITRRRMAFVLPKGAPARGGETLLNEDGESVGTV
TSGGFSPTLGMAIGMGYANKPFNKTGTKLNVQVRSRLNAVEVRKMPLVPS
RYYKVPE*
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mRNA from alignment at tig00004426_pilon:638318..639391+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4506.t1 ID=Gchil4506.t1|Name=Gchil4506.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00004426_pilon:638318..639391+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCCCTTCGCGGGCTACTCCATGCCGGTGCAGTACCCGGACGGAAT
CAAGGATTCGCACCTGTTTGTGCGCTCCTCGGCCGGCCTGTTTGATGTGT
CGCACATGGGGCAGATTGTGCTGCACGGCACTGATCGCGTGCGCTTTCTC
GAGCAACTGGTCGTCGCCGATGTGGCAGCCATCCAGCCGACTCGCGCACA
GCTGTCCGTCATTACCACCCCCGAGGGCGGCATTATCGATGATACTATCA
TCTCCAACCTGGGCAATTCTATTGGCATGGTCATCAATGGCGCTTGCAAG
GACAAGGACATAGCGCACATCAGACAGCATATGCAAGCCGCCAATGCCAA
TGGCATGGATGTCACTCTGGAGATTCTCGACAATCACCAACTGCTCGCCC
TACAGGGCCCGAAGGCCATGACGGTCATGTCGCAACTTGTGCCAGATTTC
GACTTTGTCAAGATGCCGTTCATGTCTTGCGCACCAATGAGTGTGGGCGG
AGTTTCGTGCCACGTGACACGTTGTGGATACACGGGTGAGGATGGCTTTG
AGTTGTCAGTGCCAGCTGAGAGCACTGTGCAATTGTTCGAAACGCTTATT
GGTCGGGAGGACGTGCGGCCAACTGGATTGGGCGCGCGCGATTCGCTGCG
GCTGGAGGCCGGACTGTGTCTGTACGGAAACGACATTGATGACACCACCT
CACCCGTGGAGGCTGCGCTGACGTGGACAATTGGGAAGAGGCGAAGAGAG
GAGGGTGGTTTCCTTGGCGCTGAGACCATTCTCAAGCATCTGAATGAAGG
CATTACTCGGCGAAGGATGGCATTTGTGTTGCCCAAGGGGGCGCCGGCTC
GTGGGGGGGAGACGCTACTGAACGAGGATGGAGAGAGCGTAGGCACAGTT
ACTAGTGGCGGTTTCAGCCCGACATTGGGAATGGCTATTGGAATGGGGTA
TGCCAACAAGCCGTTCAACAAGACGGGAACAAAGCTGAATGTGCAAGTTC
GGTCGCGCTTGAATGCGGTGGAGGTGCGAAAGATGCCCCTGGTACCAAGC
AGGTACTACAAGGTGCCCGAGTAG
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Coding sequence (CDS) from alignment at tig00004426_pilon:638318..639391+

>Gchil4506.t1 ID=Gchil4506.t1|Name=Gchil4506.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00004426_pilon:638318..639391+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCCCTTCGCGGGCTACTCCATGCCGGTGCAGTACCCGGACGGAAT
CAAGGATTCGCACCTGTTTGTGCGCTCCTCGGCCGGCCTGTTTGATGTGT
CGCACATGGGGCAGATTGTGCTGCACGGCACTGATCGCGTGCGCTTTCTC
GAGCAACTGGTCGTCGCCGATGTGGCAGCCATCCAGCCGACTCGCGCACA
GCTGTCCGTCATTACCACCCCCGAGGGCGGCATTATCGATGATACTATCA
TCTCCAACCTGGGCAATTCTATTGGCATGGTCATCAATGGCGCTTGCAAG
GACAAGGACATAGCGCACATCAGACAGCATATGCAAGCCGCCAATGCCAA
TGGCATGGATGTCACTCTGGAGATTCTCGACAATCACCAACTGCTCGCCC
TACAGGGCCCGAAGGCCATGACGGTCATGTCGCAACTTGTGCCAGATTTC
GACTTTGTCAAGATGCCGTTCATGTCTTGCGCACCAATGAGTGTGGGCGG
AGTTTCGTGCCACGTGACACGTTGTGGATACACGGGTGAGGATGGCTTTG
AGTTGTCAGTGCCAGCTGAGAGCACTGTGCAATTGTTCGAAACGCTTATT
GGTCGGGAGGACGTGCGGCCAACTGGATTGGGCGCGCGCGATTCGCTGCG
GCTGGAGGCCGGACTGTGTCTGTACGGAAACGACATTGATGACACCACCT
CACCCGTGGAGGCTGCGCTGACGTGGACAATTGGGAAGAGGCGAAGAGAG
GAGGGTGGTTTCCTTGGCGCTGAGACCATTCTCAAGCATCTGAATGAAGG
CATTACTCGGCGAAGGATGGCATTTGTGTTGCCCAAGGGGGCGCCGGCTC
GTGGGGGGGAGACGCTACTGAACGAGGATGGAGAGAGCGTAGGCACAGTT
ACTAGTGGCGGTTTCAGCCCGACATTGGGAATGGCTATTGGAATGGGGTA
TGCCAACAAGCCGTTCAACAAGACGGGAACAAAGCTGAATGTGCAAGTTC
GGTCGCGCTTGAATGCGGTGGAGGTGCGAAAGATGCCCCTGGTACCAAGC
AGGTACTACAAGGTGCCCGAGTAG
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