Gchil4503.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4503.t1
Unique Name	Gchil4503.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	773

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004426_pilon	contig	tig00004426_pilon:571643..573961 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4503	Gchil4503	Gracilaria chilensis NLEC103_M9 male	gene	tig00004426_pilon 571643..573961 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4503.t1.start1	Gchil4503.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004426_pilon 571643..571645 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4503.t1.CDS1	Gchil4503.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004426_pilon 571643..573961 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4503.t1.exon1	Gchil4503.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004426_pilon 571643..573961 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4503.t1.stop1	Gchil4503.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004426_pilon 573959..573961 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4503.t1	Gchil4503.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004426_pilon 571643..573961 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004426_pilon:571643..573961+
coding sequence from alignment at tig00004426_pilon:571643..573961+

mRNA sequence

>Gchil4503.t1 ID=Gchil4503.t1|Name=Gchil4503.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=773bp
MSLDMSEDHWFWVGKGIPDEKRDRRRVFYKSVGLKHPDGRKRQFKVGDTV
NMAGDEAIWVAQIIELFQVNAHDPELRHILRTDSLKNESKHHYELKRCTL
RWFYNPSDMDWTTLKNCRWPKRLNDEIWFSDHIEKPGYNSVQVIDGRAWL
FDNMLEKNEFLANVPEEYDEERDIIRIVRGFVDSKLEDLPARLLFDDELK
WLQANPSDDPKLYYNSKRRFENITPSPSKRKRRNHLHSSLREPVNVAEDE
FDPVDIKRKNDKRKHRSPHTNQGVQEVSKVRRAVRKRKIMIDDDDESLAK
QDNDEESDDVPLSQLRPTRPESKPSDHQASIDLLNDEVRDLVESLNASAF
ADDAPRPSSRPSEKLDTETPKNAEEDEITPDPAAIKPERKSLARPRAKHV
VSSKSKKSASKPSTSTKASDAIIIIDSDDEERAPKAQPQPTSPKLHRVHL
GAANRAYRGGRHGKPSMRNRSSFMPTSRERTGISFKKQQKNASRDDSKKT
PSVVSIDTASKGRLLPKQRESLVSGVHGQSSPKEDVRMKDSRSISPAMKN
GTAGDSDDVSPLNDSSIGVEGRGARQLSGKRLSGDDSGQHQNDAQRRALG
AVGKKPKALALPPDLVQPVGNFTETKKGGVGTLTIDGKYENRAQGKPGAK
KMGSENVIDVNDSDTEPDDRGLQDEGSSAVKLTQAQRKLAEDVYRIHGCM
TDVDKTFVCEKLEWLIDDIVLFHEGRKGSLNAEEYARVLKDQLLEKRQRE
IGTLGDAPAFKSHPHPRARERD*

spliced messenger RNA

>Gchil4503.t1 ID=Gchil4503.t1|Name=Gchil4503.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2319bp|location=Sequence derived from alignment at tig00004426_pilon:571643..573961+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACTGGACATGAGCGAAGATCACTGGTTTTGGGTTGGCAAAGGAAT
ACCGGACGAAAAAAGAGACCGTCGGAGGGTTTTTTACAAGTCTGTTGGAT
TGAAACACCCAGATGGACGCAAGCGACAGTTTAAAGTTGGTGATACGGTT
AACATGGCTGGCGATGAAGCAATATGGGTTGCGCAGATTATAGAACTTTT
CCAGGTCAATGCGCATGACCCAGAGCTGCGTCATATCTTGCGGACAGACA
GCCTGAAAAACGAATCAAAACATCACTACGAGCTAAAGCGATGCACTTTG
CGATGGTTTTACAACCCGAGCGATATGGATTGGACTACTCTGAAAAACTG
CAGGTGGCCAAAACGCCTTAATGATGAGATATGGTTCTCGGATCACATTG
AAAAACCTGGTTACAACAGTGTACAAGTCATCGATGGAAGGGCATGGCTT
TTTGATAATATGCTCGAGAAAAATGAATTTCTAGCCAACGTTCCTGAAGA
ATACGACGAGGAAAGGGATATCATTCGCATTGTGCGAGGCTTTGTCGACT
CCAAACTCGAAGATTTACCGGCTCGTTTGCTTTTTGATGATGAGTTGAAG
TGGTTACAGGCAAATCCATCCGACGATCCTAAGTTGTATTATAATTCAAA
ACGCCGGTTCGAAAACATCACCCCATCTCCCTCGAAACGAAAAAGACGGA
ATCACCTACACTCATCACTTCGCGAACCCGTGAATGTCGCTGAGGATGAG
TTTGACCCAGTCGATATAAAGCGCAAGAATGATAAACGGAAGCATCGATC
ACCTCATACAAATCAAGGGGTACAAGAAGTATCCAAGGTCAGGCGTGCAG
TCCGAAAAAGAAAAATCATGATCGATGATGATGACGAATCTCTGGCGAAA
CAAGACAACGATGAGGAAAGCGATGACGTTCCCCTGTCTCAATTGAGACC
CACTAGACCTGAATCAAAGCCCTCTGATCATCAGGCGAGCATTGATCTAC
TCAACGATGAAGTGCGGGATCTAGTTGAAAGCCTGAACGCTTCGGCATTT
GCAGATGACGCCCCTCGACCGTCGAGCAGACCATCTGAAAAACTGGACAC
GGAAACCCCCAAAAATGCGGAGGAAGATGAAATTACACCAGACCCCGCAG
CTATTAAACCTGAACGGAAATCTTTGGCGAGGCCGCGAGCGAAGCATGTC
GTCTCGTCGAAGTCCAAGAAATCTGCATCAAAGCCAAGCACCTCAACAAA
AGCCAGTGATGCAATTATAATTATCGACAGTGACGATGAGGAACGCGCAC
CAAAGGCTCAACCACAGCCGACATCACCGAAGTTGCATCGGGTTCATCTT
GGTGCCGCAAATCGCGCGTACAGAGGGGGAAGGCATGGGAAACCGTCGAT
GAGGAATCGTTCATCTTTCATGCCTACCTCTAGAGAGCGTACAGGCATCT
CTTTCAAAAAGCAGCAAAAAAACGCCAGTCGGGATGACTCCAAGAAAACA
CCTTCTGTTGTCAGCATCGACACAGCTTCGAAAGGGAGACTGTTGCCGAA
ACAAAGAGAATCACTGGTTTCTGGAGTTCATGGCCAAAGTAGCCCCAAGG
AAGATGTCCGTATGAAAGATAGTCGCAGTATAAGTCCAGCTATGAAGAAC
GGTACGGCCGGCGACAGTGATGACGTAAGTCCACTCAATGACTCGAGCAT
TGGCGTGGAAGGGCGAGGGGCAAGGCAATTGTCGGGAAAGCGATTGTCAG
GAGACGACAGCGGCCAGCATCAGAACGACGCTCAGCGCCGAGCATTGGGA
GCCGTTGGAAAGAAACCAAAAGCACTTGCTTTGCCCCCCGATTTAGTGCA
ACCTGTTGGCAACTTCACCGAAACGAAAAAGGGGGGCGTTGGCACACTGA
CGATAGATGGGAAATATGAGAACAGAGCTCAGGGAAAGCCTGGAGCGAAA
AAGATGGGGTCAGAAAATGTGATTGATGTAAACGATAGTGATACGGAACC
TGACGACAGAGGCCTGCAAGATGAGGGCTCTTCTGCTGTCAAGCTTACAC
AGGCCCAACGAAAGTTAGCAGAAGACGTCTATCGCATTCACGGTTGTATG
ACCGATGTTGACAAAACCTTCGTTTGTGAAAAGCTCGAATGGCTAATTGA
TGATATTGTGCTCTTTCACGAGGGGCGGAAAGGGTCTCTTAACGCAGAGG
AATACGCAAGGGTTCTTAAGGATCAGCTTCTTGAAAAACGACAGCGAGAA
ATTGGTACCTTGGGTGACGCACCAGCTTTCAAGAGCCATCCTCATCCAAG
AGCACGAGAACGAGACTGA

protein sequence of Gchil4503.t1

>Gchil4503.t1 ID=Gchil4503.t1|Name=Gchil4503.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=773bp
MSLDMSEDHWFWVGKGIPDEKRDRRRVFYKSVGLKHPDGRKRQFKVGDTV
NMAGDEAIWVAQIIELFQVNAHDPELRHILRTDSLKNESKHHYELKRCTL
RWFYNPSDMDWTTLKNCRWPKRLNDEIWFSDHIEKPGYNSVQVIDGRAWL
FDNMLEKNEFLANVPEEYDEERDIIRIVRGFVDSKLEDLPARLLFDDELK
WLQANPSDDPKLYYNSKRRFENITPSPSKRKRRNHLHSSLREPVNVAEDE
FDPVDIKRKNDKRKHRSPHTNQGVQEVSKVRRAVRKRKIMIDDDDESLAK
QDNDEESDDVPLSQLRPTRPESKPSDHQASIDLLNDEVRDLVESLNASAF
ADDAPRPSSRPSEKLDTETPKNAEEDEITPDPAAIKPERKSLARPRAKHV
VSSKSKKSASKPSTSTKASDAIIIIDSDDEERAPKAQPQPTSPKLHRVHL
GAANRAYRGGRHGKPSMRNRSSFMPTSRERTGISFKKQQKNASRDDSKKT
PSVVSIDTASKGRLLPKQRESLVSGVHGQSSPKEDVRMKDSRSISPAMKN
GTAGDSDDVSPLNDSSIGVEGRGARQLSGKRLSGDDSGQHQNDAQRRALG
AVGKKPKALALPPDLVQPVGNFTETKKGGVGTLTIDGKYENRAQGKPGAK
KMGSENVIDVNDSDTEPDDRGLQDEGSSAVKLTQAQRKLAEDVYRIHGCM
TDVDKTFVCEKLEWLIDDIVLFHEGRKGSLNAEEYARVLKDQLLEKRQRE
IGTLGDAPAFKSHPHPRARERD*

mRNA from alignment at tig00004426_pilon:571643..573961+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4503.t1 ID=Gchil4503.t1|Name=Gchil4503.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2319bp|location=Sequence derived from alignment at tig00004426_pilon:571643..573961+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCACTGGACATGAGCGAAGATCACTGGTTTTGGGTTGGCAAAGGAAT
ACCGGACGAAAAAAGAGACCGTCGGAGGGTTTTTTACAAGTCTGTTGGAT
TGAAACACCCAGATGGACGCAAGCGACAGTTTAAAGTTGGTGATACGGTT
AACATGGCTGGCGATGAAGCAATATGGGTTGCGCAGATTATAGAACTTTT
CCAGGTCAATGCGCATGACCCAGAGCTGCGTCATATCTTGCGGACAGACA
GCCTGAAAAACGAATCAAAACATCACTACGAGCTAAAGCGATGCACTTTG
CGATGGTTTTACAACCCGAGCGATATGGATTGGACTACTCTGAAAAACTG
CAGGTGGCCAAAACGCCTTAATGATGAGATATGGTTCTCGGATCACATTG
AAAAACCTGGTTACAACAGTGTACAAGTCATCGATGGAAGGGCATGGCTT
TTTGATAATATGCTCGAGAAAAATGAATTTCTAGCCAACGTTCCTGAAGA
ATACGACGAGGAAAGGGATATCATTCGCATTGTGCGAGGCTTTGTCGACT
CCAAACTCGAAGATTTACCGGCTCGTTTGCTTTTTGATGATGAGTTGAAG
TGGTTACAGGCAAATCCATCCGACGATCCTAAGTTGTATTATAATTCAAA
ACGCCGGTTCGAAAACATCACCCCATCTCCCTCGAAACGAAAAAGACGGA
ATCACCTACACTCATCACTTCGCGAACCCGTGAATGTCGCTGAGGATGAG
TTTGACCCAGTCGATATAAAGCGCAAGAATGATAAACGGAAGCATCGATC
ACCTCATACAAATCAAGGGGTACAAGAAGTATCCAAGGTCAGGCGTGCAG
TCCGAAAAAGAAAAATCATGATCGATGATGATGACGAATCTCTGGCGAAA
CAAGACAACGATGAGGAAAGCGATGACGTTCCCCTGTCTCAATTGAGACC
CACTAGACCTGAATCAAAGCCCTCTGATCATCAGGCGAGCATTGATCTAC
TCAACGATGAAGTGCGGGATCTAGTTGAAAGCCTGAACGCTTCGGCATTT
GCAGATGACGCCCCTCGACCGTCGAGCAGACCATCTGAAAAACTGGACAC
GGAAACCCCCAAAAATGCGGAGGAAGATGAAATTACACCAGACCCCGCAG
CTATTAAACCTGAACGGAAATCTTTGGCGAGGCCGCGAGCGAAGCATGTC
GTCTCGTCGAAGTCCAAGAAATCTGCATCAAAGCCAAGCACCTCAACAAA
AGCCAGTGATGCAATTATAATTATCGACAGTGACGATGAGGAACGCGCAC
CAAAGGCTCAACCACAGCCGACATCACCGAAGTTGCATCGGGTTCATCTT
GGTGCCGCAAATCGCGCGTACAGAGGGGGAAGGCATGGGAAACCGTCGAT
GAGGAATCGTTCATCTTTCATGCCTACCTCTAGAGAGCGTACAGGCATCT
CTTTCAAAAAGCAGCAAAAAAACGCCAGTCGGGATGACTCCAAGAAAACA
CCTTCTGTTGTCAGCATCGACACAGCTTCGAAAGGGAGACTGTTGCCGAA
ACAAAGAGAATCACTGGTTTCTGGAGTTCATGGCCAAAGTAGCCCCAAGG
AAGATGTCCGTATGAAAGATAGTCGCAGTATAAGTCCAGCTATGAAGAAC
GGTACGGCCGGCGACAGTGATGACGTAAGTCCACTCAATGACTCGAGCAT
TGGCGTGGAAGGGCGAGGGGCAAGGCAATTGTCGGGAAAGCGATTGTCAG
GAGACGACAGCGGCCAGCATCAGAACGACGCTCAGCGCCGAGCATTGGGA
GCCGTTGGAAAGAAACCAAAAGCACTTGCTTTGCCCCCCGATTTAGTGCA
ACCTGTTGGCAACTTCACCGAAACGAAAAAGGGGGGCGTTGGCACACTGA
CGATAGATGGGAAATATGAGAACAGAGCTCAGGGAAAGCCTGGAGCGAAA
AAGATGGGGTCAGAAAATGTGATTGATGTAAACGATAGTGATACGGAACC
TGACGACAGAGGCCTGCAAGATGAGGGCTCTTCTGCTGTCAAGCTTACAC
AGGCCCAACGAAAGTTAGCAGAAGACGTCTATCGCATTCACGGTTGTATG
ACCGATGTTGACAAAACCTTCGTTTGTGAAAAGCTCGAATGGCTAATTGA
TGATATTGTGCTCTTTCACGAGGGGCGGAAAGGGTCTCTTAACGCAGAGG
AATACGCAAGGGTTCTTAAGGATCAGCTTCTTGAAAAACGACAGCGAGAA
ATTGGTACCTTGGGTGACGCACCAGCTTTCAAGAGCCATCCTCATCCAAG
AGCACGAGAACGAGACTGA

Coding sequence (CDS) from alignment at tig00004426_pilon:571643..573961+

>Gchil4503.t1 ID=Gchil4503.t1|Name=Gchil4503.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2319bp|location=Sequence derived from alignment at tig00004426_pilon:571643..573961+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCACTGGACATGAGCGAAGATCACTGGTTTTGGGTTGGCAAAGGAAT
ACCGGACGAAAAAAGAGACCGTCGGAGGGTTTTTTACAAGTCTGTTGGAT
TGAAACACCCAGATGGACGCAAGCGACAGTTTAAAGTTGGTGATACGGTT
AACATGGCTGGCGATGAAGCAATATGGGTTGCGCAGATTATAGAACTTTT
CCAGGTCAATGCGCATGACCCAGAGCTGCGTCATATCTTGCGGACAGACA
GCCTGAAAAACGAATCAAAACATCACTACGAGCTAAAGCGATGCACTTTG
CGATGGTTTTACAACCCGAGCGATATGGATTGGACTACTCTGAAAAACTG
CAGGTGGCCAAAACGCCTTAATGATGAGATATGGTTCTCGGATCACATTG
AAAAACCTGGTTACAACAGTGTACAAGTCATCGATGGAAGGGCATGGCTT
TTTGATAATATGCTCGAGAAAAATGAATTTCTAGCCAACGTTCCTGAAGA
ATACGACGAGGAAAGGGATATCATTCGCATTGTGCGAGGCTTTGTCGACT
CCAAACTCGAAGATTTACCGGCTCGTTTGCTTTTTGATGATGAGTTGAAG
TGGTTACAGGCAAATCCATCCGACGATCCTAAGTTGTATTATAATTCAAA
ACGCCGGTTCGAAAACATCACCCCATCTCCCTCGAAACGAAAAAGACGGA
ATCACCTACACTCATCACTTCGCGAACCCGTGAATGTCGCTGAGGATGAG
TTTGACCCAGTCGATATAAAGCGCAAGAATGATAAACGGAAGCATCGATC
ACCTCATACAAATCAAGGGGTACAAGAAGTATCCAAGGTCAGGCGTGCAG
TCCGAAAAAGAAAAATCATGATCGATGATGATGACGAATCTCTGGCGAAA
CAAGACAACGATGAGGAAAGCGATGACGTTCCCCTGTCTCAATTGAGACC
CACTAGACCTGAATCAAAGCCCTCTGATCATCAGGCGAGCATTGATCTAC
TCAACGATGAAGTGCGGGATCTAGTTGAAAGCCTGAACGCTTCGGCATTT
GCAGATGACGCCCCTCGACCGTCGAGCAGACCATCTGAAAAACTGGACAC
GGAAACCCCCAAAAATGCGGAGGAAGATGAAATTACACCAGACCCCGCAG
CTATTAAACCTGAACGGAAATCTTTGGCGAGGCCGCGAGCGAAGCATGTC
GTCTCGTCGAAGTCCAAGAAATCTGCATCAAAGCCAAGCACCTCAACAAA
AGCCAGTGATGCAATTATAATTATCGACAGTGACGATGAGGAACGCGCAC
CAAAGGCTCAACCACAGCCGACATCACCGAAGTTGCATCGGGTTCATCTT
GGTGCCGCAAATCGCGCGTACAGAGGGGGAAGGCATGGGAAACCGTCGAT
GAGGAATCGTTCATCTTTCATGCCTACCTCTAGAGAGCGTACAGGCATCT
CTTTCAAAAAGCAGCAAAAAAACGCCAGTCGGGATGACTCCAAGAAAACA
CCTTCTGTTGTCAGCATCGACACAGCTTCGAAAGGGAGACTGTTGCCGAA
ACAAAGAGAATCACTGGTTTCTGGAGTTCATGGCCAAAGTAGCCCCAAGG
AAGATGTCCGTATGAAAGATAGTCGCAGTATAAGTCCAGCTATGAAGAAC
GGTACGGCCGGCGACAGTGATGACGTAAGTCCACTCAATGACTCGAGCAT
TGGCGTGGAAGGGCGAGGGGCAAGGCAATTGTCGGGAAAGCGATTGTCAG
GAGACGACAGCGGCCAGCATCAGAACGACGCTCAGCGCCGAGCATTGGGA
GCCGTTGGAAAGAAACCAAAAGCACTTGCTTTGCCCCCCGATTTAGTGCA
ACCTGTTGGCAACTTCACCGAAACGAAAAAGGGGGGCGTTGGCACACTGA
CGATAGATGGGAAATATGAGAACAGAGCTCAGGGAAAGCCTGGAGCGAAA
AAGATGGGGTCAGAAAATGTGATTGATGTAAACGATAGTGATACGGAACC
TGACGACAGAGGCCTGCAAGATGAGGGCTCTTCTGCTGTCAAGCTTACAC
AGGCCCAACGAAAGTTAGCAGAAGACGTCTATCGCATTCACGGTTGTATG
ACCGATGTTGACAAAACCTTCGTTTGTGAAAAGCTCGAATGGCTAATTGA
TGATATTGTGCTCTTTCACGAGGGGCGGAAAGGGTCTCTTAACGCAGAGG
AATACGCAAGGGTTCTTAAGGATCAGCTTCTTGAAAAACGACAGCGAGAA
ATTGGTACCTTGGGTGACGCACCAGCTTTCAAGAGCCATCCTCATCCAAG
AGCACGAGAACGAGACTGA