Gchil4499.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4499.t1
Unique NameGchil4499.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:527232..528114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMF111CT
Preferred nameSEC22B
PFAMsLongin,Synaptobrevin
Max annot lvl2759|Eukaryota
KEGG koko:K08517
KEGG Pathwayko04130,ko04145,ko05134,map04130,map04145,map05134
GOsGO:0000139,GO:0000149,GO:0002376,GO:0002474,GO:0002478,GO:0002479,GO:0002790,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005886,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006996,GO:0007154,GO:0007267,GO:0008104,GO:0008150,GO:0009306,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009987,GO:0010506,GO:0010507,GO:0010604,GO:0010639,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016241,GO:0016242,GO:0019222,GO:0019882,GO:0019884,GO:0019905,GO:0022607,GO:0023052,GO:0023061,GO:0030133,GO:0030134,GO:0030135,GO:0030139,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030666,GO:0030670,GO:0031090,GO:0031201,GO:0031224,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033116,GO:0034613,GO:0042175,GO:0042176,GO:0042590,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045335,GO:0045732,GO:0046903,GO:0046907,GO:0048002,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048279,GO:0048280,GO:0048284,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060255,GO:0061024,GO:0061025,GO:0061355,GO:0065003,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090114,GO:0090174,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0198738,GO:1902115,GO:1902116,GO:1902902,GO:1990668,GO:2000785
Evalue2.08e-70
EggNOG OGsCOG5143@1|root,KOG0862@2759|Eukaryota
Descriptionvesicle fusion with Golgi apparatus
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4499Gchil4499Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 527232..528114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4499.t1Gchil4499.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 527232..528114 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4499.t1.start1Gchil4499.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 527232..527234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4499.t1.CDS1Gchil4499.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 527232..527321 +
Gchil4499.t1.CDS2Gchil4499.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 527436..527868 +
Gchil4499.t1.CDS3Gchil4499.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 527954..528114 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4499.t1.exon1Gchil4499.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 527232..527321 +
Gchil4499.t1.exon2Gchil4499.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 527436..527868 +
Gchil4499.t1.exon3Gchil4499.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 527954..528114 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4499.t1.intron1Gchil4499.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 527322..527435 +
Gchil4499.t1.intron2Gchil4499.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 527869..527953 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4499.t1.stop1Gchil4499.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 528112..528114 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4499.t1 ID=Gchil4499.t1|Name=Gchil4499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=228bp
MPKVTLIARLTDGLPLAASMADEKDAYAKELESYERQAKKLVRSLASSYN
NNLTNQNDEHVTVESGPYFCFHYVLSSGVCILTLTERAYPKRLAFDYLDE
LRKEFFQVYGNQVHSASRPYEFIRFDTFIQKTKKVYNDSKTQRNLQKLNS
ELKDVHSIMTKNINEVISRGEKLENVAQKSTRLAQESKRYAAQAKHANRM
RIVRQYAPIGIVIVVVVVTWLVIRRLR*
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spliced messenger RNA

>Gchil4499.t1 ID=Gchil4499.t1|Name=Gchil4499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00004426_pilon:527232..528114+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAAAGTAACACTCATAGCACGCCTCACAGATGGCCTGCCACTCGC
AGCCTCAATGGCAGACGAAAAGGATGCCTACGCGAAAGAGCTCGAATCAT
ATGAAAGACAAGCAAAGAAACTCGTCAGATCCTTAGCGTCGTCGTATAAC
AACAATCTCACTAATCAAAACGATGAACATGTAACTGTCGAGTCGGGACC
TTACTTTTGCTTCCACTACGTTCTTTCTTCCGGTGTTTGCATTCTCACTT
TAACTGAGCGAGCTTATCCAAAGCGCCTAGCATTCGATTACCTTGATGAA
CTTCGTAAAGAGTTTTTCCAGGTCTACGGAAACCAGGTTCATTCAGCGTC
CAGGCCATATGAGTTCATCCGATTTGACACGTTTATTCAAAAGACGAAAA
AGGTGTACAATGACTCCAAGACGCAAAGAAACTTACAAAAGCTAAATTCA
GAGCTGAAAGACGTGCACTCCATAATGACCAAAAACATCAATGAGGTCAT
TTCGAGAGGAGAGAAGTTGGAGAACGTTGCCCAGAAATCTACAAGACTAG
CCCAAGAGTCTAAAAGATATGCCGCACAAGCGAAGCATGCCAATCGCATG
CGAATTGTCAGGCAGTATGCTCCCATAGGAATCGTGATTGTCGTAGTCGT
TGTGACGTGGCTCGTTATTCGAAGGCTGAGGTGA
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protein sequence of Gchil4499.t1

>Gchil4499.t1 ID=Gchil4499.t1|Name=Gchil4499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=228bp
MPKVTLIARLTDGLPLAASMADEKDAYAKELESYERQAKKLVRSLASSYN
NNLTNQNDEHVTVESGPYFCFHYVLSSGVCILTLTERAYPKRLAFDYLDE
LRKEFFQVYGNQVHSASRPYEFIRFDTFIQKTKKVYNDSKTQRNLQKLNS
ELKDVHSIMTKNINEVISRGEKLENVAQKSTRLAQESKRYAAQAKHANRM
RIVRQYAPIGIVIVVVVVTWLVIRRLR*
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mRNA from alignment at tig00004426_pilon:527232..528114+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4499.t1 ID=Gchil4499.t1|Name=Gchil4499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=883bp|location=Sequence derived from alignment at tig00004426_pilon:527232..528114+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGAAAGTAACACTCATAGCACGCCTCACAGATGGCCTGCCACTCGC
AGCCTCAATGGCAGACGAAAAGGATGCCTACGCGAAAGAGGTGAGTACTA
TCGTACCATGCGCCTCACCGTTTCATTAGAAATCTTCTATGAATCGATCA
GCAAAGCGCGTCATTGATCTCCAACCAGTAACTGACGGAAATGACTCATC
ACAGCTCGAATCATATGAAAGACAAGCAAAGAAACTCGTCAGATCCTTAG
CGTCGTCGTATAACAACAATCTCACTAATCAAAACGATGAACATGTAACT
GTCGAGTCGGGACCTTACTTTTGCTTCCACTACGTTCTTTCTTCCGGTGT
TTGCATTCTCACTTTAACTGAGCGAGCTTATCCAAAGCGCCTAGCATTCG
ATTACCTTGATGAACTTCGTAAAGAGTTTTTCCAGGTCTACGGAAACCAG
GTTCATTCAGCGTCCAGGCCATATGAGTTCATCCGATTTGACACGTTTAT
TCAAAAGACGAAAAAGGTGTACAATGACTCCAAGACGCAAAGAAACTTAC
AAAAGCTAAATTCAGAGCTGAAAGACGTGCACTCCATAATGACCAAAAAC
ATCAATGAGGTCATTTCGAGAGGAGAGAAGTTGGAGAGTAAGTTCCACAC
TAATCCATCCAGCCCAAACAGTTTTCTGAGCAGTTGGTCTGTTGCTGACC
CGTTTTTATTATCGAACCGCAGACGTTGCCCAGAAATCTACAAGACTAGC
CCAAGAGTCTAAAAGATATGCCGCACAAGCGAAGCATGCCAATCGCATGC
GAATTGTCAGGCAGTATGCTCCCATAGGAATCGTGATTGTCGTAGTCGTT
GTGACGTGGCTCGTTATTCGAAGGCTGAGGTGA
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Coding sequence (CDS) from alignment at tig00004426_pilon:527232..528114+

>Gchil4499.t1 ID=Gchil4499.t1|Name=Gchil4499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00004426_pilon:527232..528114+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGAAAGTAACACTCATAGCACGCCTCACAGATGGCCTGCCACTCGC
AGCCTCAATGGCAGACGAAAAGGATGCCTACGCGAAAGAGCTCGAATCAT
ATGAAAGACAAGCAAAGAAACTCGTCAGATCCTTAGCGTCGTCGTATAAC
AACAATCTCACTAATCAAAACGATGAACATGTAACTGTCGAGTCGGGACC
TTACTTTTGCTTCCACTACGTTCTTTCTTCCGGTGTTTGCATTCTCACTT
TAACTGAGCGAGCTTATCCAAAGCGCCTAGCATTCGATTACCTTGATGAA
CTTCGTAAAGAGTTTTTCCAGGTCTACGGAAACCAGGTTCATTCAGCGTC
CAGGCCATATGAGTTCATCCGATTTGACACGTTTATTCAAAAGACGAAAA
AGGTGTACAATGACTCCAAGACGCAAAGAAACTTACAAAAGCTAAATTCA
GAGCTGAAAGACGTGCACTCCATAATGACCAAAAACATCAATGAGGTCAT
TTCGAGAGGAGAGAAGTTGGAGAACGTTGCCCAGAAATCTACAAGACTAG
CCCAAGAGTCTAAAAGATATGCCGCACAAGCGAAGCATGCCAATCGCATG
CGAATTGTCAGGCAGTATGCTCCCATAGGAATCGTGATTGTCGTAGTCGT
TGTGACGTGGCTCGTTATTCGAAGGCTGAGGTGA
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