Gchil4497.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4497.t1
Unique Name	Gchil4497.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	335

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004426_pilon	contig	tig00004426_pilon:523258..524262 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173264.KI913949_gene4270
PFAMs	DUF3611
Max annot lvl	1117\|Cyanobacteria
Evalue	3.35e-17
EggNOG OGs	COG3038@1\|root,COG3038@2\|Bacteria,1G6R0@1117\|Cyanobacteria,1HBY9@1150\|Oscillatoriales
Description	Protein of unknown function (DUF3611)
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4497	Gchil4497	Gracilaria chilensis NLEC103_M9 male	gene	tig00004426_pilon 523258..524262 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4497.t1.start1	Gchil4497.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004426_pilon 523258..523260 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4497.t1.CDS1	Gchil4497.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004426_pilon 523258..524262 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4497.t1.exon1	Gchil4497.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004426_pilon 523258..524262 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4497.t1.stop1	Gchil4497.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004426_pilon 524260..524262 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4497.t1	Gchil4497.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004426_pilon 523258..524262 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004426_pilon:523258..524262+
coding sequence from alignment at tig00004426_pilon:523258..524262+

mRNA sequence

>Gchil4497.t1 ID=Gchil4497.t1|Name=Gchil4497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=335bp
MKTCTEPAFVGKGASTFLNIDRRIAAFRRSDVSSWRRSRPRAAYPPSRAQ
FIGKLTSDEDQNSGGNDTESPNANVGEKGSVEDPGHFFAKLEEARKGREE
AQSNAPNLEAKPGDVVDKDLEVSTTLVPEDQEPIPQGLQSASRALWRIGW
VTWWLQLILTVIAAVILLFAFLFPGINVRSAASAVGFAISGAGIVFAFLS
LFWTYGYTRLALWLRDKQIQEKAKLRINRKLRFGLLFSITGIVTLLLGLQ
AIVGTLLARLLGTGGFASPYASAQNAGRGAVLSATGLVQPVDILVVQACA
NGLTGLMIALVATIWFRTREKKWTASKELLEKSS*

spliced messenger RNA

>Gchil4497.t1 ID=Gchil4497.t1|Name=Gchil4497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at tig00004426_pilon:523258..524262+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAACCTGCACAGAACCAGCGTTTGTTGGAAAAGGAGCCTCCACATT
TCTAAACATCGATAGACGCATCGCCGCCTTTAGACGATCTGATGTATCAA
GCTGGCGAAGATCTCGTCCAAGGGCGGCGTATCCTCCGAGTAGAGCTCAA
TTTATAGGGAAATTAACTTCTGATGAAGATCAGAATTCAGGCGGGAATGA
TACAGAGAGCCCCAACGCAAACGTGGGAGAAAAAGGGTCTGTTGAAGACC
CTGGTCACTTCTTTGCGAAACTTGAGGAAGCCCGGAAGGGGAGGGAGGAA
GCGCAGTCAAATGCGCCCAACTTAGAAGCTAAGCCTGGTGACGTGGTGGA
CAAAGACCTTGAAGTTAGTACTACACTTGTACCTGAGGACCAAGAACCTA
TTCCCCAAGGTCTTCAATCTGCTTCTAGGGCACTCTGGCGTATTGGTTGG
GTTACGTGGTGGTTGCAGCTAATTCTAACCGTCATCGCTGCCGTCATACT
CTTATTCGCATTTCTGTTTCCAGGGATTAATGTTCGTTCCGCTGCGTCTG
CCGTGGGTTTCGCAATTTCCGGAGCTGGGATTGTATTTGCCTTCTTGAGC
CTCTTTTGGACCTATGGATACACAAGATTGGCACTTTGGTTGCGCGACAA
GCAGATCCAAGAAAAAGCCAAGTTGCGAATAAACCGTAAACTTCGGTTTG
GACTGTTGTTTTCAATCACAGGTATCGTTACTCTTCTCCTAGGGCTTCAA
GCAATCGTTGGTACACTTCTCGCTCGTCTATTGGGAACAGGGGGATTTGC
GTCCCCATACGCTTCTGCACAAAACGCCGGTCGTGGAGCTGTGCTATCGG
CTACAGGACTTGTGCAACCGGTGGATATACTTGTCGTTCAAGCTTGCGCT
AACGGTTTGACTGGGTTAATGATAGCACTTGTCGCGACGATATGGTTCCG
AACAAGGGAGAAGAAGTGGACAGCGAGCAAAGAGCTTTTAGAAAAGTCTT
CGTAA

protein sequence of Gchil4497.t1

>Gchil4497.t1 ID=Gchil4497.t1|Name=Gchil4497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=335bp
MKTCTEPAFVGKGASTFLNIDRRIAAFRRSDVSSWRRSRPRAAYPPSRAQ
FIGKLTSDEDQNSGGNDTESPNANVGEKGSVEDPGHFFAKLEEARKGREE
AQSNAPNLEAKPGDVVDKDLEVSTTLVPEDQEPIPQGLQSASRALWRIGW
VTWWLQLILTVIAAVILLFAFLFPGINVRSAASAVGFAISGAGIVFAFLS
LFWTYGYTRLALWLRDKQIQEKAKLRINRKLRFGLLFSITGIVTLLLGLQ
AIVGTLLARLLGTGGFASPYASAQNAGRGAVLSATGLVQPVDILVVQACA
NGLTGLMIALVATIWFRTREKKWTASKELLEKSS*

mRNA from alignment at tig00004426_pilon:523258..524262+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4497.t1 ID=Gchil4497.t1|Name=Gchil4497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at tig00004426_pilon:523258..524262+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAACCTGCACAGAACCAGCGTTTGTTGGAAAAGGAGCCTCCACATT
TCTAAACATCGATAGACGCATCGCCGCCTTTAGACGATCTGATGTATCAA
GCTGGCGAAGATCTCGTCCAAGGGCGGCGTATCCTCCGAGTAGAGCTCAA
TTTATAGGGAAATTAACTTCTGATGAAGATCAGAATTCAGGCGGGAATGA
TACAGAGAGCCCCAACGCAAACGTGGGAGAAAAAGGGTCTGTTGAAGACC
CTGGTCACTTCTTTGCGAAACTTGAGGAAGCCCGGAAGGGGAGGGAGGAA
GCGCAGTCAAATGCGCCCAACTTAGAAGCTAAGCCTGGTGACGTGGTGGA
CAAAGACCTTGAAGTTAGTACTACACTTGTACCTGAGGACCAAGAACCTA
TTCCCCAAGGTCTTCAATCTGCTTCTAGGGCACTCTGGCGTATTGGTTGG
GTTACGTGGTGGTTGCAGCTAATTCTAACCGTCATCGCTGCCGTCATACT
CTTATTCGCATTTCTGTTTCCAGGGATTAATGTTCGTTCCGCTGCGTCTG
CCGTGGGTTTCGCAATTTCCGGAGCTGGGATTGTATTTGCCTTCTTGAGC
CTCTTTTGGACCTATGGATACACAAGATTGGCACTTTGGTTGCGCGACAA
GCAGATCCAAGAAAAAGCCAAGTTGCGAATAAACCGTAAACTTCGGTTTG
GACTGTTGTTTTCAATCACAGGTATCGTTACTCTTCTCCTAGGGCTTCAA
GCAATCGTTGGTACACTTCTCGCTCGTCTATTGGGAACAGGGGGATTTGC
GTCCCCATACGCTTCTGCACAAAACGCCGGTCGTGGAGCTGTGCTATCGG
CTACAGGACTTGTGCAACCGGTGGATATACTTGTCGTTCAAGCTTGCGCT
AACGGTTTGACTGGGTTAATGATAGCACTTGTCGCGACGATATGGTTCCG
AACAAGGGAGAAGAAGTGGACAGCGAGCAAAGAGCTTTTAGAAAAGTCTT
CGTAA

Coding sequence (CDS) from alignment at tig00004426_pilon:523258..524262+

>Gchil4497.t1 ID=Gchil4497.t1|Name=Gchil4497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1005bp|location=Sequence derived from alignment at tig00004426_pilon:523258..524262+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAACCTGCACAGAACCAGCGTTTGTTGGAAAAGGAGCCTCCACATT
TCTAAACATCGATAGACGCATCGCCGCCTTTAGACGATCTGATGTATCAA
GCTGGCGAAGATCTCGTCCAAGGGCGGCGTATCCTCCGAGTAGAGCTCAA
TTTATAGGGAAATTAACTTCTGATGAAGATCAGAATTCAGGCGGGAATGA
TACAGAGAGCCCCAACGCAAACGTGGGAGAAAAAGGGTCTGTTGAAGACC
CTGGTCACTTCTTTGCGAAACTTGAGGAAGCCCGGAAGGGGAGGGAGGAA
GCGCAGTCAAATGCGCCCAACTTAGAAGCTAAGCCTGGTGACGTGGTGGA
CAAAGACCTTGAAGTTAGTACTACACTTGTACCTGAGGACCAAGAACCTA
TTCCCCAAGGTCTTCAATCTGCTTCTAGGGCACTCTGGCGTATTGGTTGG
GTTACGTGGTGGTTGCAGCTAATTCTAACCGTCATCGCTGCCGTCATACT
CTTATTCGCATTTCTGTTTCCAGGGATTAATGTTCGTTCCGCTGCGTCTG
CCGTGGGTTTCGCAATTTCCGGAGCTGGGATTGTATTTGCCTTCTTGAGC
CTCTTTTGGACCTATGGATACACAAGATTGGCACTTTGGTTGCGCGACAA
GCAGATCCAAGAAAAAGCCAAGTTGCGAATAAACCGTAAACTTCGGTTTG
GACTGTTGTTTTCAATCACAGGTATCGTTACTCTTCTCCTAGGGCTTCAA
GCAATCGTTGGTACACTTCTCGCTCGTCTATTGGGAACAGGGGGATTTGC
GTCCCCATACGCTTCTGCACAAAACGCCGGTCGTGGAGCTGTGCTATCGG
CTACAGGACTTGTGCAACCGGTGGATATACTTGTCGTTCAAGCTTGCGCT
AACGGTTTGACTGGGTTAATGATAGCACTTGTCGCGACGATATGGTTCCG
AACAAGGGAGAAGAAGTGGACAGCGAGCAAAGAGCTTTTAGAAAAGTCTT
CGTAA