Gchil4491.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4491.t1
Unique NameGchil4491.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length231
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:509709..510695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4491Gchil4491Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 509709..510695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4491.t1Gchil4491.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 509709..510695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4491.t1.CDS1Gchil4491.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 509709..509711 +
Gchil4491.t1.CDS2Gchil4491.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 509828..509928 +
Gchil4491.t1.CDS3Gchil4491.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 510013..510128 +
Gchil4491.t1.CDS4Gchil4491.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 510223..510695 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4491.t1.exon1Gchil4491.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 509709..509711 +
Gchil4491.t1.exon2Gchil4491.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 509828..509928 +
Gchil4491.t1.exon3Gchil4491.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 510013..510128 +
Gchil4491.t1.exon4Gchil4491.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 510223..510695 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4491.t1.start1Gchil4491.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 509709..509711 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4491.t1.intron1Gchil4491.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 509712..509827 +
Gchil4491.t1.intron2Gchil4491.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 509929..510012 +
Gchil4491.t1.intron3Gchil4491.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 510129..510222 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4491.t1.stop1Gchil4491.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 510693..510695 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4491.t1 ID=Gchil4491.t1|Name=Gchil4491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=231bp
MVVSEIVAATMIAVYGLRNSYRIVLRAERLVRRKIRRPAPIIEGYHTFPR
FFIRKVFRAGLVIAMRWEGRAKNAAQLAADARLRAKKTSQAMAHRIEDVR
HRAEDVRHRAKKTSQAMANRIEDVRHRAEDVRQRAHMVRERAVEVRDRAK
DQTRMMREKAVELRQRAQHAKDRAVAAKRKLLDMRDKVKARVSPKAKSRT
LYSAACTIFPPETKPLPMVHTRISETKTLV*
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spliced messenger RNA

>Gchil4491.t1 ID=Gchil4491.t1|Name=Gchil4491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00004426_pilon:509709..510695+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTTTCAGAAATCGTCGCAGCGACCATGATCGCTGTCTACGGTCT
CAGAAACAGTTACCGCATTGTTTTAAGAGCAGAGCGCCTTGTCCGTCGCA
AAATTCGGCGCCCCGCTCCTATCATTGAAGGATATCATACCTTTCCGCGC
TTCTTCATCCGTAAGGTTTTCCGCGCGGGCTTGGTCATTGCTATGCGATG
GGAAGGCCGTGCCAAAAATGCCGCTCAACTGGCTGCGGATGCCCGTCTTC
GAGCGAAGAAGACTTCTCAGGCTATGGCCCACAGAATAGAAGACGTTCGT
CATCGTGCCGAAGACGTTCGTCATCGAGCGAAGAAGACTTCACAGGCTAT
GGCCAACAGAATAGAAGACGTTCGTCACCGTGCTGAAGACGTTCGTCAAC
GAGCGCATATGGTACGCGAACGAGCTGTCGAAGTTCGAGATCGAGCAAAG
GATCAGACTCGCATGATGAGAGAAAAGGCTGTTGAACTGCGTCAACGTGC
TCAGCATGCTAAAGATCGTGCTGTGGCCGCAAAAAGAAAGCTATTGGATA
TGAGAGACAAAGTGAAAGCGCGAGTATCACCCAAAGCGAAGTCAAGAACA
CTCTATAGTGCTGCATGTACCATATTCCCACCGGAGACAAAGCCACTACC
TATGGTACATACTAGAATATCTGAAACTAAAACACTCGTTTGA
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protein sequence of Gchil4491.t1

>Gchil4491.t1 ID=Gchil4491.t1|Name=Gchil4491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=231bp
MVVSEIVAATMIAVYGLRNSYRIVLRAERLVRRKIRRPAPIIEGYHTFPR
FFIRKVFRAGLVIAMRWEGRAKNAAQLAADARLRAKKTSQAMAHRIEDVR
HRAEDVRHRAKKTSQAMANRIEDVRHRAEDVRQRAHMVRERAVEVRDRAK
DQTRMMREKAVELRQRAQHAKDRAVAAKRKLLDMRDKVKARVSPKAKSRT
LYSAACTIFPPETKPLPMVHTRISETKTLV*
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mRNA from alignment at tig00004426_pilon:509709..510695+

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4491.t1 ID=Gchil4491.t1|Name=Gchil4491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00004426_pilon:509709..510695+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTATGATCCACTTGATCTAAACACCACCAGAACAAATCGGTGCTCTG
TGCTGACTACTCACGAATACTCTGTCTCTGTCAAATCCTCCACTTCTGAC
ATGGCAATATCTTTCACAGGTTGTTTCAGAAATCGTCGCAGCGACCATGA
TCGCTGTCTACGGTCTCAGAAACAGTTACCGCATTGTTTTAAGAGCAGAG
CGCCTTGTCCGTCGCAAAATGTATGTGTCGGATTTACGTCTCCTGACCTT
GAGTTCGCACTTGATTTCCACGTTGAACTGACAACGAAACTAAATTCCAC
CAAGTCGGCGCCCCGCTCCTATCATTGAAGGATATCATACCTTTCCGCGC
TTCTTCATCCGTAAGGTTTTCCGCGCGGGCTTGGTCATTGCTATGCGATG
GGAAGGCCGTGCCAAAAATGGTATGTTTATCTTGAGTGCCCAAGACATAG
ATCAGTCCCCCATATCAATTATTCTTGCTGACGCTCATACTTTTAATGTT
TTTATCTTACACAGCCGCTCAACTGGCTGCGGATGCCCGTCTTCGAGCGA
AGAAGACTTCTCAGGCTATGGCCCACAGAATAGAAGACGTTCGTCATCGT
GCCGAAGACGTTCGTCATCGAGCGAAGAAGACTTCACAGGCTATGGCCAA
CAGAATAGAAGACGTTCGTCACCGTGCTGAAGACGTTCGTCAACGAGCGC
ATATGGTACGCGAACGAGCTGTCGAAGTTCGAGATCGAGCAAAGGATCAG
ACTCGCATGATGAGAGAAAAGGCTGTTGAACTGCGTCAACGTGCTCAGCA
TGCTAAAGATCGTGCTGTGGCCGCAAAAAGAAAGCTATTGGATATGAGAG
ACAAAGTGAAAGCGCGAGTATCACCCAAAGCGAAGTCAAGAACACTCTAT
AGTGCTGCATGTACCATATTCCCACCGGAGACAAAGCCACTACCTATGGT
ACATACTAGAATATCTGAAACTAAAACACTCGTTTGA
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Coding sequence (CDS) from alignment at tig00004426_pilon:509709..510695+

>Gchil4491.t1 ID=Gchil4491.t1|Name=Gchil4491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=693bp|location=Sequence derived from alignment at tig00004426_pilon:509709..510695+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTGTTTCAGAAATCGTCGCAGCGACCATGATCGCTGTCTACGGTCT
CAGAAACAGTTACCGCATTGTTTTAAGAGCAGAGCGCCTTGTCCGTCGCA
AAATTCGGCGCCCCGCTCCTATCATTGAAGGATATCATACCTTTCCGCGC
TTCTTCATCCGTAAGGTTTTCCGCGCGGGCTTGGTCATTGCTATGCGATG
GGAAGGCCGTGCCAAAAATGCCGCTCAACTGGCTGCGGATGCCCGTCTTC
GAGCGAAGAAGACTTCTCAGGCTATGGCCCACAGAATAGAAGACGTTCGT
CATCGTGCCGAAGACGTTCGTCATCGAGCGAAGAAGACTTCACAGGCTAT
GGCCAACAGAATAGAAGACGTTCGTCACCGTGCTGAAGACGTTCGTCAAC
GAGCGCATATGGTACGCGAACGAGCTGTCGAAGTTCGAGATCGAGCAAAG
GATCAGACTCGCATGATGAGAGAAAAGGCTGTTGAACTGCGTCAACGTGC
TCAGCATGCTAAAGATCGTGCTGTGGCCGCAAAAAGAAAGCTATTGGATA
TGAGAGACAAAGTGAAAGCGCGAGTATCACCCAAAGCGAAGTCAAGAACA
CTCTATAGTGCTGCATGTACCATATTCCCACCGGAGACAAAGCCACTACC
TATGGTACATACTAGAATATCTGAAACTAAAACACTCGTTTGA
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