Gchil4490.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4490.t1
Unique NameGchil4490.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length203
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:508421..509029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr44390
PFAMsSnoaL_2
Max annot lvl2836|Bacillariophyta
Evalue1.94e-15
EggNOG OGs2CMP3@1|root,2QR51@2759|Eukaryota,2XESD@2836|Bacillariophyta
DescriptionSnoaL-like domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4490Gchil4490Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 508421..509029 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4490.t1.stop1Gchil4490.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 508421..508423 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4490.t1.CDS1Gchil4490.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 508421..509029 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4490.t1.exon1Gchil4490.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 508421..509029 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4490.t1.start1Gchil4490.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 509027..509029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4490.t1Gchil4490.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 508421..509029 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4490.t1 ID=Gchil4490.t1|Name=Gchil4490.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=203bp
MAFSSPSKPILHVTGGFLPACKTTQTPSRRKVFTAPHRRALRAELPKEPA
AVVKTEQLIRKFWSLTSTKKYSTVVSCFTDDAVYHDGSFPKPCIGKEAIM
AHFSKFENVLPSSFLFVVDDIVAGADRAGARWHVETSEGTPLPFSRGLSM
YNIVERNGEFLISEAWEYSETPIKVPAITLPLLRLAGSLLRLRDASNRKS
GG*
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spliced messenger RNA

>Gchil4490.t1 ID=Gchil4490.t1|Name=Gchil4490.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=609bp|location=Sequence derived from alignment at tig00004426_pilon:508421..509029- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCAGCTCGCCCAGCAAACCAATTCTACATGTTACCGGTGGGTT
TCTTCCTGCATGCAAGACGACACAAACTCCTTCGCGACGGAAAGTTTTCA
CGGCACCCCATCGACGAGCATTGCGTGCAGAGCTTCCAAAGGAGCCCGCT
GCTGTCGTCAAGACTGAACAGCTAATTCGCAAGTTTTGGAGTTTGACATC
GACAAAAAAGTACTCGACAGTCGTCTCATGCTTCACAGATGATGCCGTGT
ACCACGACGGATCGTTTCCCAAACCGTGCATAGGAAAGGAAGCAATTATG
GCTCATTTCTCCAAATTTGAGAACGTTCTTCCTTCATCCTTTCTGTTTGT
GGTCGATGATATTGTCGCCGGTGCAGATAGAGCAGGCGCAAGGTGGCATG
TCGAGACATCAGAAGGTACGCCATTACCTTTCAGCAGAGGCCTTTCCATG
TATAATATAGTTGAGCGAAATGGTGAGTTTCTCATTTCAGAAGCTTGGGA
GTATTCAGAGACACCTATCAAGGTACCGGCCATTACGTTGCCACTTCTTC
GTCTCGCCGGTTCACTTCTTCGTCTTCGCGACGCCTCCAATCGAAAATCA
GGTGGCTAG
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protein sequence of Gchil4490.t1

>Gchil4490.t1 ID=Gchil4490.t1|Name=Gchil4490.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=203bp
MAFSSPSKPILHVTGGFLPACKTTQTPSRRKVFTAPHRRALRAELPKEPA
AVVKTEQLIRKFWSLTSTKKYSTVVSCFTDDAVYHDGSFPKPCIGKEAIM
AHFSKFENVLPSSFLFVVDDIVAGADRAGARWHVETSEGTPLPFSRGLSM
YNIVERNGEFLISEAWEYSETPIKVPAITLPLLRLAGSLLRLRDASNRKS
GG*
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mRNA from alignment at tig00004426_pilon:508421..509029-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4490.t1 ID=Gchil4490.t1|Name=Gchil4490.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=609bp|location=Sequence derived from alignment at tig00004426_pilon:508421..509029- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTCAGCTCGCCCAGCAAACCAATTCTACATGTTACCGGTGGGTT
TCTTCCTGCATGCAAGACGACACAAACTCCTTCGCGACGGAAAGTTTTCA
CGGCACCCCATCGACGAGCATTGCGTGCAGAGCTTCCAAAGGAGCCCGCT
GCTGTCGTCAAGACTGAACAGCTAATTCGCAAGTTTTGGAGTTTGACATC
GACAAAAAAGTACTCGACAGTCGTCTCATGCTTCACAGATGATGCCGTGT
ACCACGACGGATCGTTTCCCAAACCGTGCATAGGAAAGGAAGCAATTATG
GCTCATTTCTCCAAATTTGAGAACGTTCTTCCTTCATCCTTTCTGTTTGT
GGTCGATGATATTGTCGCCGGTGCAGATAGAGCAGGCGCAAGGTGGCATG
TCGAGACATCAGAAGGTACGCCATTACCTTTCAGCAGAGGCCTTTCCATG
TATAATATAGTTGAGCGAAATGGTGAGTTTCTCATTTCAGAAGCTTGGGA
GTATTCAGAGACACCTATCAAGGTACCGGCCATTACGTTGCCACTTCTTC
GTCTCGCCGGTTCACTTCTTCGTCTTCGCGACGCCTCCAATCGAAAATCA
GGTGGCTAG
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Coding sequence (CDS) from alignment at tig00004426_pilon:508421..509029-

>Gchil4490.t1 ID=Gchil4490.t1|Name=Gchil4490.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=609bp|location=Sequence derived from alignment at tig00004426_pilon:508421..509029- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTCAGCTCGCCCAGCAAACCAATTCTACATGTTACCGGTGGGTT
TCTTCCTGCATGCAAGACGACACAAACTCCTTCGCGACGGAAAGTTTTCA
CGGCACCCCATCGACGAGCATTGCGTGCAGAGCTTCCAAAGGAGCCCGCT
GCTGTCGTCAAGACTGAACAGCTAATTCGCAAGTTTTGGAGTTTGACATC
GACAAAAAAGTACTCGACAGTCGTCTCATGCTTCACAGATGATGCCGTGT
ACCACGACGGATCGTTTCCCAAACCGTGCATAGGAAAGGAAGCAATTATG
GCTCATTTCTCCAAATTTGAGAACGTTCTTCCTTCATCCTTTCTGTTTGT
GGTCGATGATATTGTCGCCGGTGCAGATAGAGCAGGCGCAAGGTGGCATG
TCGAGACATCAGAAGGTACGCCATTACCTTTCAGCAGAGGCCTTTCCATG
TATAATATAGTTGAGCGAAATGGTGAGTTTCTCATTTCAGAAGCTTGGGA
GTATTCAGAGACACCTATCAAGGTACCGGCCATTACGTTGCCACTTCTTC
GTCTCGCCGGTTCACTTCTTCGTCTTCGCGACGCCTCCAATCGAAAATCA
GGTGGCTAG
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