Gchil4484.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4484.t1
Unique NameGchil4484.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:492448..493887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1049564.TevJSym_al00400
PFAMsFG-GAP_2
Max annot lvl1236|Gammaproteobacteria
Evalue4.3e-18
EggNOG OGsCOG3203@1|root,COG4257@1|root,COG3203@2|Bacteria,COG4257@2|Bacteria,1QVA0@1224|Proteobacteria,1T5JG@1236|Gammaproteobacteria
DescriptionFG-GAP repeat
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4484Gchil4484Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 492448..493887 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4484.t1.stop1Gchil4484.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 492448..492450 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4484.t1.CDS1Gchil4484.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 492448..493887 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4484.t1.exon1Gchil4484.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 492448..493887 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4484.t1.start1Gchil4484.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 493885..493887 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4484.t1Gchil4484.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 492448..493887 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4484.t1 ID=Gchil4484.t1|Name=Gchil4484.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=480bp
MRRTVPSLLLAALALALALALLTTAARAHVVVRPPRDARSTTAAPRFGES
TCVSADGTRIGVGASAHDAHRGALFIYNQRVAPGDQATHWTRIQLSTNDT
QRAELRAPRTLRVQARGSALGFSCALRRDGRVVLVGAPGHDTQRGAVFVF
DLSDAQSRRWRQLARLDAPDARVGDAFGWALAASADGAVVAASARGRKAN
DGEVLLFDCGRAGHECTLASRLAAPDYTNSAGPRGIRIRNNFGSSVCLNA
DGTVLAASSIGYLHESGAVYVFTRPARAHPWTLSQRLLSPKPQPRAFFGY
RVAMDAHARHIVVGADGEHQYTGAVYVFGRQNASTPFRFTHEINAEHARH
EDNFGASLAMTADARTLIVGAPGANAAARVDHGLAFVYHRRPGARAAAVW
ELAHTLHPPAEHAAHTNHFAWSVDVSADGSRFASGAPHAYHGSGLVTLGR
LSSPPVVRRAPSTASLLHDETLPPHADEL*
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spliced messenger RNA

>Gchil4484.t1 ID=Gchil4484.t1|Name=Gchil4484.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00004426_pilon:492448..493887- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGCACTGTTCCATCCCTACTGCTGGCGGCGCTGGCGCTGGCGCT
GGCGCTGGCGCTGCTGACAACGGCCGCGCGGGCGCACGTGGTGGTGCGAC
CGCCGCGCGACGCGCGCAGCACGACGGCAGCGCCTCGCTTCGGAGAAAGC
ACGTGCGTGAGCGCGGACGGCACGCGCATAGGCGTAGGCGCCAGCGCGCA
CGACGCGCACCGCGGCGCGCTGTTCATCTACAATCAGCGCGTGGCGCCGG
GCGACCAAGCCACACACTGGACGCGCATCCAATTGAGCACAAACGACACA
CAACGCGCCGAGTTGCGCGCGCCGCGTACACTGCGAGTGCAGGCACGCGG
CAGCGCGCTGGGCTTCTCGTGTGCGCTGCGACGCGACGGAAGAGTGGTGC
TGGTGGGCGCGCCGGGACATGACACGCAGCGCGGCGCGGTGTTTGTGTTC
GACCTGTCGGACGCGCAGTCGCGACGGTGGCGGCAGCTGGCGCGTTTGGA
CGCTCCCGATGCGCGCGTGGGCGACGCTTTCGGCTGGGCGCTGGCGGCGA
GCGCTGACGGCGCCGTCGTGGCCGCTAGCGCGCGCGGCCGCAAGGCTAAC
GACGGCGAGGTTCTTCTGTTCGACTGCGGTCGCGCCGGTCACGAGTGTAC
ACTGGCGTCGCGACTCGCCGCACCCGACTATACAAACTCCGCCGGGCCGC
GCGGCATCCGCATCCGCAACAACTTCGGCTCCAGTGTGTGTCTCAACGCC
GACGGCACCGTGCTGGCCGCCAGCAGCATTGGCTACCTGCACGAGAGCGG
CGCCGTGTACGTGTTCACACGTCCCGCACGCGCGCACCCCTGGACGCTTT
CGCAACGTCTGCTGTCGCCCAAGCCGCAGCCGCGCGCCTTCTTCGGTTAC
CGCGTCGCCATGGACGCGCACGCACGTCACATCGTCGTCGGCGCCGACGG
CGAACACCAATACACCGGCGCCGTGTACGTGTTTGGCAGACAGAACGCCT
CCACGCCGTTCCGCTTCACGCACGAGATCAACGCCGAGCACGCGCGCCAC
GAGGATAACTTTGGCGCATCACTGGCCATGACCGCCGACGCGCGCACGCT
CATTGTGGGCGCGCCCGGCGCAAACGCCGCAGCGCGCGTGGACCACGGAC
TGGCCTTTGTGTACCATCGGCGCCCCGGCGCGCGCGCCGCCGCAGTGTGG
GAACTGGCGCATACGCTGCATCCCCCCGCCGAGCACGCCGCGCACACCAA
CCACTTTGCGTGGAGCGTGGACGTGAGCGCCGATGGCTCGCGCTTCGCCA
GCGGCGCGCCGCACGCGTACCACGGCTCCGGGCTGGTGACGCTGGGACGT
CTATCGTCGCCGCCGGTGGTGCGTCGCGCGCCGTCGACCGCGTCGCTGCT
TCACGACGAAACGCTGCCGCCGCACGCCGACGAGCTATAA
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protein sequence of Gchil4484.t1

>Gchil4484.t1 ID=Gchil4484.t1|Name=Gchil4484.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=480bp
MRRTVPSLLLAALALALALALLTTAARAHVVVRPPRDARSTTAAPRFGES
TCVSADGTRIGVGASAHDAHRGALFIYNQRVAPGDQATHWTRIQLSTNDT
QRAELRAPRTLRVQARGSALGFSCALRRDGRVVLVGAPGHDTQRGAVFVF
DLSDAQSRRWRQLARLDAPDARVGDAFGWALAASADGAVVAASARGRKAN
DGEVLLFDCGRAGHECTLASRLAAPDYTNSAGPRGIRIRNNFGSSVCLNA
DGTVLAASSIGYLHESGAVYVFTRPARAHPWTLSQRLLSPKPQPRAFFGY
RVAMDAHARHIVVGADGEHQYTGAVYVFGRQNASTPFRFTHEINAEHARH
EDNFGASLAMTADARTLIVGAPGANAAARVDHGLAFVYHRRPGARAAAVW
ELAHTLHPPAEHAAHTNHFAWSVDVSADGSRFASGAPHAYHGSGLVTLGR
LSSPPVVRRAPSTASLLHDETLPPHADEL*
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mRNA from alignment at tig00004426_pilon:492448..493887-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4484.t1 ID=Gchil4484.t1|Name=Gchil4484.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00004426_pilon:492448..493887- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCGCACTGTTCCATCCCTACTGCTGGCGGCGCTGGCGCTGGCGCT
GGCGCTGGCGCTGCTGACAACGGCCGCGCGGGCGCACGTGGTGGTGCGAC
CGCCGCGCGACGCGCGCAGCACGACGGCAGCGCCTCGCTTCGGAGAAAGC
ACGTGCGTGAGCGCGGACGGCACGCGCATAGGCGTAGGCGCCAGCGCGCA
CGACGCGCACCGCGGCGCGCTGTTCATCTACAATCAGCGCGTGGCGCCGG
GCGACCAAGCCACACACTGGACGCGCATCCAATTGAGCACAAACGACACA
CAACGCGCCGAGTTGCGCGCGCCGCGTACACTGCGAGTGCAGGCACGCGG
CAGCGCGCTGGGCTTCTCGTGTGCGCTGCGACGCGACGGAAGAGTGGTGC
TGGTGGGCGCGCCGGGACATGACACGCAGCGCGGCGCGGTGTTTGTGTTC
GACCTGTCGGACGCGCAGTCGCGACGGTGGCGGCAGCTGGCGCGTTTGGA
CGCTCCCGATGCGCGCGTGGGCGACGCTTTCGGCTGGGCGCTGGCGGCGA
GCGCTGACGGCGCCGTCGTGGCCGCTAGCGCGCGCGGCCGCAAGGCTAAC
GACGGCGAGGTTCTTCTGTTCGACTGCGGTCGCGCCGGTCACGAGTGTAC
ACTGGCGTCGCGACTCGCCGCACCCGACTATACAAACTCCGCCGGGCCGC
GCGGCATCCGCATCCGCAACAACTTCGGCTCCAGTGTGTGTCTCAACGCC
GACGGCACCGTGCTGGCCGCCAGCAGCATTGGCTACCTGCACGAGAGCGG
CGCCGTGTACGTGTTCACACGTCCCGCACGCGCGCACCCCTGGACGCTTT
CGCAACGTCTGCTGTCGCCCAAGCCGCAGCCGCGCGCCTTCTTCGGTTAC
CGCGTCGCCATGGACGCGCACGCACGTCACATCGTCGTCGGCGCCGACGG
CGAACACCAATACACCGGCGCCGTGTACGTGTTTGGCAGACAGAACGCCT
CCACGCCGTTCCGCTTCACGCACGAGATCAACGCCGAGCACGCGCGCCAC
GAGGATAACTTTGGCGCATCACTGGCCATGACCGCCGACGCGCGCACGCT
CATTGTGGGCGCGCCCGGCGCAAACGCCGCAGCGCGCGTGGACCACGGAC
TGGCCTTTGTGTACCATCGGCGCCCCGGCGCGCGCGCCGCCGCAGTGTGG
GAACTGGCGCATACGCTGCATCCCCCCGCCGAGCACGCCGCGCACACCAA
CCACTTTGCGTGGAGCGTGGACGTGAGCGCCGATGGCTCGCGCTTCGCCA
GCGGCGCGCCGCACGCGTACCACGGCTCCGGGCTGGTGACGCTGGGACGT
CTATCGTCGCCGCCGGTGGTGCGTCGCGCGCCGTCGACCGCGTCGCTGCT
TCACGACGAAACGCTGCCGCCGCACGCCGACGAGCTATAA
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Coding sequence (CDS) from alignment at tig00004426_pilon:492448..493887-

>Gchil4484.t1 ID=Gchil4484.t1|Name=Gchil4484.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1440bp|location=Sequence derived from alignment at tig00004426_pilon:492448..493887- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCGCACTGTTCCATCCCTACTGCTGGCGGCGCTGGCGCTGGCGCT
GGCGCTGGCGCTGCTGACAACGGCCGCGCGGGCGCACGTGGTGGTGCGAC
CGCCGCGCGACGCGCGCAGCACGACGGCAGCGCCTCGCTTCGGAGAAAGC
ACGTGCGTGAGCGCGGACGGCACGCGCATAGGCGTAGGCGCCAGCGCGCA
CGACGCGCACCGCGGCGCGCTGTTCATCTACAATCAGCGCGTGGCGCCGG
GCGACCAAGCCACACACTGGACGCGCATCCAATTGAGCACAAACGACACA
CAACGCGCCGAGTTGCGCGCGCCGCGTACACTGCGAGTGCAGGCACGCGG
CAGCGCGCTGGGCTTCTCGTGTGCGCTGCGACGCGACGGAAGAGTGGTGC
TGGTGGGCGCGCCGGGACATGACACGCAGCGCGGCGCGGTGTTTGTGTTC
GACCTGTCGGACGCGCAGTCGCGACGGTGGCGGCAGCTGGCGCGTTTGGA
CGCTCCCGATGCGCGCGTGGGCGACGCTTTCGGCTGGGCGCTGGCGGCGA
GCGCTGACGGCGCCGTCGTGGCCGCTAGCGCGCGCGGCCGCAAGGCTAAC
GACGGCGAGGTTCTTCTGTTCGACTGCGGTCGCGCCGGTCACGAGTGTAC
ACTGGCGTCGCGACTCGCCGCACCCGACTATACAAACTCCGCCGGGCCGC
GCGGCATCCGCATCCGCAACAACTTCGGCTCCAGTGTGTGTCTCAACGCC
GACGGCACCGTGCTGGCCGCCAGCAGCATTGGCTACCTGCACGAGAGCGG
CGCCGTGTACGTGTTCACACGTCCCGCACGCGCGCACCCCTGGACGCTTT
CGCAACGTCTGCTGTCGCCCAAGCCGCAGCCGCGCGCCTTCTTCGGTTAC
CGCGTCGCCATGGACGCGCACGCACGTCACATCGTCGTCGGCGCCGACGG
CGAACACCAATACACCGGCGCCGTGTACGTGTTTGGCAGACAGAACGCCT
CCACGCCGTTCCGCTTCACGCACGAGATCAACGCCGAGCACGCGCGCCAC
GAGGATAACTTTGGCGCATCACTGGCCATGACCGCCGACGCGCGCACGCT
CATTGTGGGCGCGCCCGGCGCAAACGCCGCAGCGCGCGTGGACCACGGAC
TGGCCTTTGTGTACCATCGGCGCCCCGGCGCGCGCGCCGCCGCAGTGTGG
GAACTGGCGCATACGCTGCATCCCCCCGCCGAGCACGCCGCGCACACCAA
CCACTTTGCGTGGAGCGTGGACGTGAGCGCCGATGGCTCGCGCTTCGCCA
GCGGCGCGCCGCACGCGTACCACGGCTCCGGGCTGGTGACGCTGGGACGT
CTATCGTCGCCGCCGGTGGTGCGTCGCGCGCCGTCGACCGCGTCGCTGCT
TCACGACGAAACGCTGCCGCCGCACGCCGACGAGCTATAA
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