Gchil4474.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4474.t1
Unique NameGchil4474.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length564
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:468301..469992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8128.ENSONIP00000021311
Preferred namePOLI
PFAMsIMS,IMS_C,IMS_HHH
Max annot lvl33208|Metazoa
KEGG koko:K03510
KEGG Pathwayko03460,map03460
GOsGO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010225,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071897,GO:0090304,GO:0104004,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1990904
Evalue2.21e-47
EggNOG OGsCOG0389@1|root,KOG2095@2759|Eukaryota,38CM1@33154|Opisthokonta,3BCX5@33208|Metazoa,3CV7D@33213|Bilateria,48CIW@7711|Chordata,4917S@7742|Vertebrata,4A17J@7898|Actinopterygii
EC2.7.7.7
DescriptionPolymerase (DNA directed) iota
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4474Gchil4474Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 468301..469992 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4474.t1.stop1Gchil4474.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 468301..468303 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4474.t1.CDS1Gchil4474.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 468301..469992 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4474.t1.exon1Gchil4474.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 468301..469992 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4474.t1.start1Gchil4474.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 469990..469992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4474.t1Gchil4474.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 468301..469992 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4474.t1 ID=Gchil4474.t1|Name=Gchil4474.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=564bp
MFSGKKRPRPAATRAIIALDLDCFYASVAIRARPHLKDKPVVIVQKHLCV
TSNYVARSRAKGAVQKMTPVSQALQKCPELVCIDGSDLTPFREASLEVIT
VVRAWLEERATKISSPLNRRSCICPCQRLGFDEVFIDVTGLTQAQIERGG
APFHFKGHVFGLTEDDQVRRTLMVASQIAHELRDHVTQKTELTICAGISN
SKLLAKLAVNMNKPNDQSTFLSEHAAEYIATLSPRALMGFGHNTHEKIIK
WAEKHAAHTSVDTVAQVLLLFGIEPGGLQNLVEIVGTEKQARYLVDLCRG
VDTSEVVDCGNAPKSMSAEDSCRSCDNMEDVNRRLTIQISRLVTRLRDDG
MLFLRRPKTLTVSYRFRGDGFTSTSRSVPMPVEIVSVCCSRQNKAIPKAI
EGIRRTALAVLKQQAGVCTKNKFDLTLIAVGATNFTSVTTNNGNGFTEDI
SKFFAKSTESEVGTHRRVNVLELDSGSASISTRAGQSASQLEGQKSESGG
NCELGTVATCPICRKTLPGSNLKQNNHIDNCLRTGNFRTKSSSKRPRSTS
NTRTVDSYFAKRT*
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spliced messenger RNA

>Gchil4474.t1 ID=Gchil4474.t1|Name=Gchil4474.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1692bp|location=Sequence derived from alignment at tig00004426_pilon:468301..469992- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCGGGGAAGAAGAGGCCGCGGCCTGCTGCAACCAGGGCCATAAT
TGCTCTTGACTTGGATTGTTTCTATGCATCTGTGGCCATTCGGGCCCGTC
CGCACTTGAAAGACAAGCCAGTTGTAATCGTTCAGAAGCACTTGTGTGTC
ACCAGCAACTATGTGGCTCGAAGTCGAGCAAAAGGTGCAGTTCAAAAGAT
GACCCCTGTCTCTCAGGCGCTACAAAAATGTCCTGAATTAGTATGTATAG
ATGGGTCTGACCTAACACCCTTTAGAGAGGCCAGTCTCGAAGTCATCACC
GTGGTAAGGGCTTGGCTTGAAGAAAGGGCAACGAAAATATCTTCCCCGTT
GAATCGACGATCTTGTATATGCCCATGCCAAAGGTTAGGGTTTGATGAGG
TGTTTATAGATGTGACTGGTCTAACTCAAGCACAAATTGAGAGAGGAGGT
GCTCCTTTTCATTTCAAGGGCCATGTGTTTGGATTGACTGAGGACGACCA
AGTCAGGCGAACGCTTATGGTAGCATCTCAAATTGCACATGAACTAAGAG
ACCATGTTACACAAAAAACTGAATTGACGATTTGTGCTGGTATCAGCAAC
TCCAAACTGCTGGCTAAACTTGCTGTGAACATGAACAAGCCCAACGATCA
ATCAACGTTCTTGTCAGAGCATGCCGCGGAATACATAGCAACTTTGTCAC
CCCGAGCGCTCATGGGTTTCGGTCATAACACTCATGAAAAGATTATCAAA
TGGGCAGAGAAGCATGCCGCACACACGTCGGTTGACACCGTGGCGCAAGT
TCTACTCTTGTTCGGAATTGAACCTGGCGGCTTGCAAAACCTTGTGGAGA
TAGTGGGGACTGAAAAACAAGCTCGATATCTTGTTGATCTCTGTCGAGGC
GTTGATACCTCCGAAGTTGTAGATTGTGGGAATGCACCAAAATCGATGTC
GGCTGAAGATTCTTGCCGCAGCTGTGACAATATGGAAGACGTCAATCGAC
GTCTTACTATTCAAATAAGCCGATTGGTAACTCGTCTGCGGGATGATGGA
ATGCTATTCTTAAGGAGACCAAAAACATTGACTGTGTCGTACAGATTTCG
CGGAGATGGGTTTACCAGCACTTCCCGCTCTGTACCAATGCCAGTGGAAA
TCGTCTCCGTCTGTTGTTCAAGACAAAACAAAGCAATCCCAAAGGCAATA
GAAGGGATTCGGAGAACAGCATTGGCCGTTCTCAAGCAACAAGCGGGTGT
GTGTACCAAAAACAAATTCGACCTAACTTTAATTGCGGTCGGTGCAACAA
ACTTTACAAGTGTAACAACCAACAACGGAAATGGATTCACTGAAGATATA
TCTAAATTCTTCGCTAAATCTACGGAGAGTGAAGTGGGTACGCATCGGAG
AGTAAATGTTCTTGAACTGGATAGCGGCTCTGCTTCAATATCGACTCGGG
CGGGTCAGTCAGCTTCACAACTCGAAGGGCAGAAAAGCGAATCAGGTGGC
AATTGTGAGTTGGGTACTGTGGCCACATGTCCTATCTGCCGCAAGACGCT
GCCCGGAAGTAACTTGAAGCAAAACAACCACATCGACAATTGTCTTAGGA
CTGGCAACTTTCGCACTAAAAGCAGTTCGAAAAGACCACGAAGCACTTCC
AATACAAGAACGGTAGACTCCTATTTTGCGAAGCGCACTTGA
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protein sequence of Gchil4474.t1

>Gchil4474.t1 ID=Gchil4474.t1|Name=Gchil4474.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=564bp
MFSGKKRPRPAATRAIIALDLDCFYASVAIRARPHLKDKPVVIVQKHLCV
TSNYVARSRAKGAVQKMTPVSQALQKCPELVCIDGSDLTPFREASLEVIT
VVRAWLEERATKISSPLNRRSCICPCQRLGFDEVFIDVTGLTQAQIERGG
APFHFKGHVFGLTEDDQVRRTLMVASQIAHELRDHVTQKTELTICAGISN
SKLLAKLAVNMNKPNDQSTFLSEHAAEYIATLSPRALMGFGHNTHEKIIK
WAEKHAAHTSVDTVAQVLLLFGIEPGGLQNLVEIVGTEKQARYLVDLCRG
VDTSEVVDCGNAPKSMSAEDSCRSCDNMEDVNRRLTIQISRLVTRLRDDG
MLFLRRPKTLTVSYRFRGDGFTSTSRSVPMPVEIVSVCCSRQNKAIPKAI
EGIRRTALAVLKQQAGVCTKNKFDLTLIAVGATNFTSVTTNNGNGFTEDI
SKFFAKSTESEVGTHRRVNVLELDSGSASISTRAGQSASQLEGQKSESGG
NCELGTVATCPICRKTLPGSNLKQNNHIDNCLRTGNFRTKSSSKRPRSTS
NTRTVDSYFAKRT*
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mRNA from alignment at tig00004426_pilon:468301..469992-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4474.t1 ID=Gchil4474.t1|Name=Gchil4474.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1692bp|location=Sequence derived from alignment at tig00004426_pilon:468301..469992- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCTCGGGGAAGAAGAGGCCGCGGCCTGCTGCAACCAGGGCCATAAT
TGCTCTTGACTTGGATTGTTTCTATGCATCTGTGGCCATTCGGGCCCGTC
CGCACTTGAAAGACAAGCCAGTTGTAATCGTTCAGAAGCACTTGTGTGTC
ACCAGCAACTATGTGGCTCGAAGTCGAGCAAAAGGTGCAGTTCAAAAGAT
GACCCCTGTCTCTCAGGCGCTACAAAAATGTCCTGAATTAGTATGTATAG
ATGGGTCTGACCTAACACCCTTTAGAGAGGCCAGTCTCGAAGTCATCACC
GTGGTAAGGGCTTGGCTTGAAGAAAGGGCAACGAAAATATCTTCCCCGTT
GAATCGACGATCTTGTATATGCCCATGCCAAAGGTTAGGGTTTGATGAGG
TGTTTATAGATGTGACTGGTCTAACTCAAGCACAAATTGAGAGAGGAGGT
GCTCCTTTTCATTTCAAGGGCCATGTGTTTGGATTGACTGAGGACGACCA
AGTCAGGCGAACGCTTATGGTAGCATCTCAAATTGCACATGAACTAAGAG
ACCATGTTACACAAAAAACTGAATTGACGATTTGTGCTGGTATCAGCAAC
TCCAAACTGCTGGCTAAACTTGCTGTGAACATGAACAAGCCCAACGATCA
ATCAACGTTCTTGTCAGAGCATGCCGCGGAATACATAGCAACTTTGTCAC
CCCGAGCGCTCATGGGTTTCGGTCATAACACTCATGAAAAGATTATCAAA
TGGGCAGAGAAGCATGCCGCACACACGTCGGTTGACACCGTGGCGCAAGT
TCTACTCTTGTTCGGAATTGAACCTGGCGGCTTGCAAAACCTTGTGGAGA
TAGTGGGGACTGAAAAACAAGCTCGATATCTTGTTGATCTCTGTCGAGGC
GTTGATACCTCCGAAGTTGTAGATTGTGGGAATGCACCAAAATCGATGTC
GGCTGAAGATTCTTGCCGCAGCTGTGACAATATGGAAGACGTCAATCGAC
GTCTTACTATTCAAATAAGCCGATTGGTAACTCGTCTGCGGGATGATGGA
ATGCTATTCTTAAGGAGACCAAAAACATTGACTGTGTCGTACAGATTTCG
CGGAGATGGGTTTACCAGCACTTCCCGCTCTGTACCAATGCCAGTGGAAA
TCGTCTCCGTCTGTTGTTCAAGACAAAACAAAGCAATCCCAAAGGCAATA
GAAGGGATTCGGAGAACAGCATTGGCCGTTCTCAAGCAACAAGCGGGTGT
GTGTACCAAAAACAAATTCGACCTAACTTTAATTGCGGTCGGTGCAACAA
ACTTTACAAGTGTAACAACCAACAACGGAAATGGATTCACTGAAGATATA
TCTAAATTCTTCGCTAAATCTACGGAGAGTGAAGTGGGTACGCATCGGAG
AGTAAATGTTCTTGAACTGGATAGCGGCTCTGCTTCAATATCGACTCGGG
CGGGTCAGTCAGCTTCACAACTCGAAGGGCAGAAAAGCGAATCAGGTGGC
AATTGTGAGTTGGGTACTGTGGCCACATGTCCTATCTGCCGCAAGACGCT
GCCCGGAAGTAACTTGAAGCAAAACAACCACATCGACAATTGTCTTAGGA
CTGGCAACTTTCGCACTAAAAGCAGTTCGAAAAGACCACGAAGCACTTCC
AATACAAGAACGGTAGACTCCTATTTTGCGAAGCGCACTTGA
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Coding sequence (CDS) from alignment at tig00004426_pilon:468301..469992-

>Gchil4474.t1 ID=Gchil4474.t1|Name=Gchil4474.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1692bp|location=Sequence derived from alignment at tig00004426_pilon:468301..469992- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCTCGGGGAAGAAGAGGCCGCGGCCTGCTGCAACCAGGGCCATAAT
TGCTCTTGACTTGGATTGTTTCTATGCATCTGTGGCCATTCGGGCCCGTC
CGCACTTGAAAGACAAGCCAGTTGTAATCGTTCAGAAGCACTTGTGTGTC
ACCAGCAACTATGTGGCTCGAAGTCGAGCAAAAGGTGCAGTTCAAAAGAT
GACCCCTGTCTCTCAGGCGCTACAAAAATGTCCTGAATTAGTATGTATAG
ATGGGTCTGACCTAACACCCTTTAGAGAGGCCAGTCTCGAAGTCATCACC
GTGGTAAGGGCTTGGCTTGAAGAAAGGGCAACGAAAATATCTTCCCCGTT
GAATCGACGATCTTGTATATGCCCATGCCAAAGGTTAGGGTTTGATGAGG
TGTTTATAGATGTGACTGGTCTAACTCAAGCACAAATTGAGAGAGGAGGT
GCTCCTTTTCATTTCAAGGGCCATGTGTTTGGATTGACTGAGGACGACCA
AGTCAGGCGAACGCTTATGGTAGCATCTCAAATTGCACATGAACTAAGAG
ACCATGTTACACAAAAAACTGAATTGACGATTTGTGCTGGTATCAGCAAC
TCCAAACTGCTGGCTAAACTTGCTGTGAACATGAACAAGCCCAACGATCA
ATCAACGTTCTTGTCAGAGCATGCCGCGGAATACATAGCAACTTTGTCAC
CCCGAGCGCTCATGGGTTTCGGTCATAACACTCATGAAAAGATTATCAAA
TGGGCAGAGAAGCATGCCGCACACACGTCGGTTGACACCGTGGCGCAAGT
TCTACTCTTGTTCGGAATTGAACCTGGCGGCTTGCAAAACCTTGTGGAGA
TAGTGGGGACTGAAAAACAAGCTCGATATCTTGTTGATCTCTGTCGAGGC
GTTGATACCTCCGAAGTTGTAGATTGTGGGAATGCACCAAAATCGATGTC
GGCTGAAGATTCTTGCCGCAGCTGTGACAATATGGAAGACGTCAATCGAC
GTCTTACTATTCAAATAAGCCGATTGGTAACTCGTCTGCGGGATGATGGA
ATGCTATTCTTAAGGAGACCAAAAACATTGACTGTGTCGTACAGATTTCG
CGGAGATGGGTTTACCAGCACTTCCCGCTCTGTACCAATGCCAGTGGAAA
TCGTCTCCGTCTGTTGTTCAAGACAAAACAAAGCAATCCCAAAGGCAATA
GAAGGGATTCGGAGAACAGCATTGGCCGTTCTCAAGCAACAAGCGGGTGT
GTGTACCAAAAACAAATTCGACCTAACTTTAATTGCGGTCGGTGCAACAA
ACTTTACAAGTGTAACAACCAACAACGGAAATGGATTCACTGAAGATATA
TCTAAATTCTTCGCTAAATCTACGGAGAGTGAAGTGGGTACGCATCGGAG
AGTAAATGTTCTTGAACTGGATAGCGGCTCTGCTTCAATATCGACTCGGG
CGGGTCAGTCAGCTTCACAACTCGAAGGGCAGAAAAGCGAATCAGGTGGC
AATTGTGAGTTGGGTACTGTGGCCACATGTCCTATCTGCCGCAAGACGCT
GCCCGGAAGTAACTTGAAGCAAAACAACCACATCGACAATTGTCTTAGGA
CTGGCAACTTTCGCACTAAAAGCAGTTCGAAAAGACCACGAAGCACTTCC
AATACAAGAACGGTAGACTCCTATTTTGCGAAGCGCACTTGA
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