Gchil4471.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4471.t1
Unique NameGchil4471.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length461
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:461981..463731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709275.1
PFAMsABC1
Max annot lvl2759|Eukaryota
KEGG koko:K08869
Evalue5.79e-118
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota
Descriptionregulation of tocopherol cyclase activity
COG categoryE
BRITEko00000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4471Gchil4471Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 461981..463731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4471.t1Gchil4471.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 461981..463731 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4471.t1.stop1Gchil4471.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 461981..461983 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4471.t1.CDS1Gchil4471.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 461981..462552 -
Gchil4471.t1.CDS2Gchil4471.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 462656..462670 -
Gchil4471.t1.CDS3Gchil4471.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 462794..463441 -
Gchil4471.t1.CDS4Gchil4471.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 463513..463558 -
Gchil4471.t1.CDS5Gchil4471.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 463630..463731 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4471.t1.exon1Gchil4471.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 461981..462552 -
Gchil4471.t1.exon2Gchil4471.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 462656..462670 -
Gchil4471.t1.exon3Gchil4471.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 462794..463441 -
Gchil4471.t1.exon4Gchil4471.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 463513..463558 -
Gchil4471.t1.exon5Gchil4471.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 463630..463731 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4471.t1.intron1Gchil4471.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 462553..462655 -
Gchil4471.t1.intron2Gchil4471.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 462671..462793 -
Gchil4471.t1.intron3Gchil4471.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 463442..463512 -
Gchil4471.t1.intron4Gchil4471.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 463559..463629 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4471.t1.start1Gchil4471.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 463729..463731 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4471.t1 ID=Gchil4471.t1|Name=Gchil4471.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=461bp
MGYKKTQISLRIQNASAEKRTKTWNKRHEWGADKVYKLCVDLRGFYLKDG
QFLGARSDLVPMAWCDSLRRLQDRVPPVAFSQIQNTIRESYNVNKVSQIF
KTLDPIPLASATIAQVHRGEMPDGTPIVLKTQYTDQQRLCDMDLLNLKRL
ATYLQKHDMSFFDMHSVVTEFEAQIPAEFDFLREAEMMTIIRNNLRRAGI
FDVVVPRIIPGLVSNRALTMTYVDGVRPDNSLALNHWGINPKDVLKAVGR
AFGQMLLCDGVAHCDPHLGNLIIMRDGKVALIDFGQAKELPEDLRKKLCA
FYLAINSKNNLYILKTFSDLGIELDIRLEDIDEKFMRMIPHYANGMLDTA
PLPPEIEINPFSTESPLRQVPIKKFNPDLFMILRTMGLLRSLTETLNVET
TDCWMSNVFRPYALRGLRRNDISEFAKKSRSRAIRSALTKGVPSPFDSQD
DEITEFCAIS*
back to top

spliced messenger RNA

>Gchil4471.t1 ID=Gchil4471.t1|Name=Gchil4471.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1383bp|location=Sequence derived from alignment at tig00004426_pilon:461981..463731- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTATAAAAAGACTCAGATTTCCCTGCGGATTCAAAACGCTTCTGC
TGAGAAAAGAACAAAGACATGGAACAAACGCCATGAATGGGGCGCTGATA
AAGTCTATAAACTTTGCGTAGACCTTCGTGGCTTTTATCTCAAGGATGGA
CAATTTCTTGGTGCACGAAGCGATCTAGTACCGATGGCATGGTGCGATTC
TCTCCGTCGTCTACAGGACCGCGTTCCTCCAGTTGCGTTTTCGCAGATAC
AAAACACAATACGAGAATCCTACAACGTCAACAAAGTCAGCCAAATATTT
AAGACTCTCGATCCCATACCTCTGGCATCCGCCACAATTGCCCAAGTACA
CCGAGGCGAGATGCCGGATGGCACCCCAATTGTTTTGAAAACTCAATACA
CAGATCAACAACGGCTGTGCGACATGGATCTGCTTAACCTTAAGCGACTT
GCAACCTATCTTCAGAAACATGACATGTCATTTTTTGACATGCATTCCGT
CGTCACAGAATTTGAAGCGCAGATTCCTGCCGAGTTTGACTTTCTGAGGG
AAGCTGAGATGATGACCATTATCAGAAACAATCTTCGAAGAGCCGGCATC
TTTGACGTTGTTGTACCAAGGATTATACCGGGACTTGTCTCTAATCGAGC
TTTGACCATGACTTATGTTGACGGCGTGCGACCAGATAATTCACTTGCGC
TCAATCACTGGGGAATTAATCCGAAAGATGTGCTCAAGGCTGTCGGAAGA
GCCTTTGGACAGATGCTGCTCTGTGATGGGGTTGCACATTGTGATCCTCA
CCTTGGGAATTTGATAATAATGAGGGATGGAAAGGTGGCGCTCATTGACT
TTGGCCAGGCCAAGGAGCTACCAGAAGACCTTCGAAAGAAGCTTTGTGCT
TTCTATCTCGCTATCAATTCAAAAAACAATCTGTACATCTTGAAGACCTT
TTCAGACCTTGGGATTGAGCTTGATATCCGTCTAGAAGATATTGACGAAA
AGTTCATGCGAATGATTCCGCATTACGCAAACGGAATGCTTGATACAGCG
CCTTTACCCCCAGAAATTGAGATCAATCCTTTTTCTACTGAAAGTCCATT
GAGACAAGTGCCGATCAAGAAGTTCAATCCGGATCTGTTTATGATCCTGC
GGACCATGGGGCTGTTGAGATCACTGACGGAAACATTGAATGTGGAAACA
ACCGACTGTTGGATGTCTAACGTCTTCAGACCATATGCGTTGCGCGGACT
TCGCCGGAACGATATCTCCGAGTTTGCGAAAAAGAGCCGATCAAGGGCAA
TCAGATCTGCGTTGACCAAGGGTGTGCCCTCCCCCTTTGACTCACAAGAT
GACGAAATCACAGAGTTTTGTGCCATATCTTGA
back to top

protein sequence of Gchil4471.t1

>Gchil4471.t1 ID=Gchil4471.t1|Name=Gchil4471.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=461bp
MGYKKTQISLRIQNASAEKRTKTWNKRHEWGADKVYKLCVDLRGFYLKDG
QFLGARSDLVPMAWCDSLRRLQDRVPPVAFSQIQNTIRESYNVNKVSQIF
KTLDPIPLASATIAQVHRGEMPDGTPIVLKTQYTDQQRLCDMDLLNLKRL
ATYLQKHDMSFFDMHSVVTEFEAQIPAEFDFLREAEMMTIIRNNLRRAGI
FDVVVPRIIPGLVSNRALTMTYVDGVRPDNSLALNHWGINPKDVLKAVGR
AFGQMLLCDGVAHCDPHLGNLIIMRDGKVALIDFGQAKELPEDLRKKLCA
FYLAINSKNNLYILKTFSDLGIELDIRLEDIDEKFMRMIPHYANGMLDTA
PLPPEIEINPFSTESPLRQVPIKKFNPDLFMILRTMGLLRSLTETLNVET
TDCWMSNVFRPYALRGLRRNDISEFAKKSRSRAIRSALTKGVPSPFDSQD
DEITEFCAIS*
back to top

mRNA from alignment at tig00004426_pilon:461981..463731-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4471.t1 ID=Gchil4471.t1|Name=Gchil4471.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1751bp|location=Sequence derived from alignment at tig00004426_pilon:461981..463731- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGTATAAAAAGACTCAGATTTCCCTGCGGATTCAAAACGCTTCTGC
TGAGAAAAGAACAAAGACATGGAACAAACGCCATGAATGGGGCGCTGATA
AAGTGTGTTGGCTTTGTTATCTGCATTTTCAAGCTTTCATTTACTAACCG
GTTTCTTCTGTTTTGTTCCACAGGTCTATAAACTTTGCGTAGACCTTCGT
GGCTTTTATCTCAAGGATGGTGCGTTTTGAAGTACATCACAGTCCTCCTA
CAAACACGCGTTTATGAATCCATACTGACCCCCAACCCAGGACAATTTCT
TGGTGCACGAAGCGATCTAGTACCGATGGCATGGTGCGATTCTCTCCGTC
GTCTACAGGACCGCGTTCCTCCAGTTGCGTTTTCGCAGATACAAAACACA
ATACGAGAATCCTACAACGTCAACAAAGTCAGCCAAATATTTAAGACTCT
CGATCCCATACCTCTGGCATCCGCCACAATTGCCCAAGTACACCGAGGCG
AGATGCCGGATGGCACCCCAATTGTTTTGAAAACTCAATACACAGATCAA
CAACGGCTGTGCGACATGGATCTGCTTAACCTTAAGCGACTTGCAACCTA
TCTTCAGAAACATGACATGTCATTTTTTGACATGCATTCCGTCGTCACAG
AATTTGAAGCGCAGATTCCTGCCGAGTTTGACTTTCTGAGGGAAGCTGAG
ATGATGACCATTATCAGAAACAATCTTCGAAGAGCCGGCATCTTTGACGT
TGTTGTACCAAGGATTATACCGGGACTTGTCTCTAATCGAGCTTTGACCA
TGACTTATGTTGACGGCGTGCGACCAGATAATTCACTTGCGCTCAATCAC
TGGGGAATTAATCCGAAAGATGTGCTCAAGGCTGTCGGAAGAGCCTTTGG
ACAGATGCTGCTCTGTGATGGGGTTGCACATTGTGATCGTATGTATATGT
TTGCGCTCGTTTGGTGAAATGCATTGTGAACGCCCAGACTTCACTTGCTA
ACTACTCTTTGCCAACCTTTCCTCCCCCTCGCAACCGAAACCATTCGCTT
TGCGTACAAAGCTCACCTTGGGAATTGTAAGTGCCTCAGAAGAAAGAAGT
CGGCGTAATAGCCTTTTTATATATTCTTGCATGCACACGCATCTGACAGA
CTTTTCCATTGTTTTTGGTTGATTCGAAGTGATAATAATGAGGGATGGAA
AGGTGGCGCTCATTGACTTTGGCCAGGCCAAGGAGCTACCAGAAGACCTT
CGAAAGAAGCTTTGTGCTTTCTATCTCGCTATCAATTCAAAAAACAATCT
GTACATCTTGAAGACCTTTTCAGACCTTGGGATTGAGCTTGATATCCGTC
TAGAAGATATTGACGAAAAGTTCATGCGAATGATTCCGCATTACGCAAAC
GGAATGCTTGATACAGCGCCTTTACCCCCAGAAATTGAGATCAATCCTTT
TTCTACTGAAAGTCCATTGAGACAAGTGCCGATCAAGAAGTTCAATCCGG
ATCTGTTTATGATCCTGCGGACCATGGGGCTGTTGAGATCACTGACGGAA
ACATTGAATGTGGAAACAACCGACTGTTGGATGTCTAACGTCTTCAGACC
ATATGCGTTGCGCGGACTTCGCCGGAACGATATCTCCGAGTTTGCGAAAA
AGAGCCGATCAAGGGCAATCAGATCTGCGTTGACCAAGGGTGTGCCCTCC
CCCTTTGACTCACAAGATGACGAAATCACAGAGTTTTGTGCCATATCTTG
A
back to top

Coding sequence (CDS) from alignment at tig00004426_pilon:461981..463731-

>Gchil4471.t1 ID=Gchil4471.t1|Name=Gchil4471.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1383bp|location=Sequence derived from alignment at tig00004426_pilon:461981..463731- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGTATAAAAAGACTCAGATTTCCCTGCGGATTCAAAACGCTTCTGC
TGAGAAAAGAACAAAGACATGGAACAAACGCCATGAATGGGGCGCTGATA
AAGTCTATAAACTTTGCGTAGACCTTCGTGGCTTTTATCTCAAGGATGGA
CAATTTCTTGGTGCACGAAGCGATCTAGTACCGATGGCATGGTGCGATTC
TCTCCGTCGTCTACAGGACCGCGTTCCTCCAGTTGCGTTTTCGCAGATAC
AAAACACAATACGAGAATCCTACAACGTCAACAAAGTCAGCCAAATATTT
AAGACTCTCGATCCCATACCTCTGGCATCCGCCACAATTGCCCAAGTACA
CCGAGGCGAGATGCCGGATGGCACCCCAATTGTTTTGAAAACTCAATACA
CAGATCAACAACGGCTGTGCGACATGGATCTGCTTAACCTTAAGCGACTT
GCAACCTATCTTCAGAAACATGACATGTCATTTTTTGACATGCATTCCGT
CGTCACAGAATTTGAAGCGCAGATTCCTGCCGAGTTTGACTTTCTGAGGG
AAGCTGAGATGATGACCATTATCAGAAACAATCTTCGAAGAGCCGGCATC
TTTGACGTTGTTGTACCAAGGATTATACCGGGACTTGTCTCTAATCGAGC
TTTGACCATGACTTATGTTGACGGCGTGCGACCAGATAATTCACTTGCGC
TCAATCACTGGGGAATTAATCCGAAAGATGTGCTCAAGGCTGTCGGAAGA
GCCTTTGGACAGATGCTGCTCTGTGATGGGGTTGCACATTGTGATCCTCA
CCTTGGGAATTTGATAATAATGAGGGATGGAAAGGTGGCGCTCATTGACT
TTGGCCAGGCCAAGGAGCTACCAGAAGACCTTCGAAAGAAGCTTTGTGCT
TTCTATCTCGCTATCAATTCAAAAAACAATCTGTACATCTTGAAGACCTT
TTCAGACCTTGGGATTGAGCTTGATATCCGTCTAGAAGATATTGACGAAA
AGTTCATGCGAATGATTCCGCATTACGCAAACGGAATGCTTGATACAGCG
CCTTTACCCCCAGAAATTGAGATCAATCCTTTTTCTACTGAAAGTCCATT
GAGACAAGTGCCGATCAAGAAGTTCAATCCGGATCTGTTTATGATCCTGC
GGACCATGGGGCTGTTGAGATCACTGACGGAAACATTGAATGTGGAAACA
ACCGACTGTTGGATGTCTAACGTCTTCAGACCATATGCGTTGCGCGGACT
TCGCCGGAACGATATCTCCGAGTTTGCGAAAAAGAGCCGATCAAGGGCAA
TCAGATCTGCGTTGACCAAGGGTGTGCCCTCCCCCTTTGACTCACAAGAT
GACGAAATCACAGAGTTTTGTGCCATATCTTGA
back to top