Gchil4470.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4470.t1
Unique NameGchil4470.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length179
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:460530..461066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN164CT
PFAMsFer2
Max annot lvl2759|Eukaryota
Evalue4.85e-29
EggNOG OGs2EYCC@1|root,2SZW3@2759|Eukaryota
Description2Fe-2S iron-sulfur cluster binding domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4470Gchil4470Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 460530..461066 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4470.t1.start1Gchil4470.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 460530..460532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4470.t1.CDS1Gchil4470.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 460530..461066 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4470.t1.exon1Gchil4470.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 460530..461066 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4470.t1.stop1Gchil4470.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 461064..461066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4470.t1Gchil4470.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 460530..461066 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4470.t1 ID=Gchil4470.t1|Name=Gchil4470.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=179bp
MPGEIAVRFINTPSGQPIVAAAKPGDNLLAVGDSVGVHIPRACQTGLCGS
CTCDVLDPSAPDGRQTVRACQTRAIPFNSSTELVVDVARMKVAARAKNPM
ARFENLDTEYVPRAPPRARGSATRQVQCRACASNGDVLCDACDGAGEDGG
YICALCAGTGSLRCGDCQGTGVVTVRKR*
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spliced messenger RNA

>Gchil4470.t1 ID=Gchil4470.t1|Name=Gchil4470.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00004426_pilon:460530..461066+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGGCGAGATAGCCGTCCGCTTCATCAACACCCCGTCCGGCCAGCC
CATcgtcgccgccgccaaacccggcgacaacctgctcgccgtcggcgact
ccgtcggcgtcCACATCCCCCGCGCCTGCCAGACCGGTCTGTGCGGCTCG
TGCACCTGCGACGTTCTTGACCCCTCTGCCCCCGACGGCCGCCAAACCGT
GCGCGCCTGTCAGACGCGCGCCATTCCCTTCAACTCCTCCACTGAGCTTG
TTGTCGATGTCGCTCGCATGAAAGTTGCCGCGCGCGCCAAAAATCCCATG
GCCCGCTTTGAAAACCTCGACACGGAGTACGTGCCGCGCGCCCCGCCGAG
GGCCCGCGGCTCTGCCACACGCCAGGTGCAATGTCGAGCCTGTGCGAGCA
ACGGCGACGTTCTGTGCGACGCTTGCGACGGCGCTGGCGAGGACGGCGGC
TACATCTGTGCCCTTTGCGCGGGCACTGGCTCTCTTAGGTGCGGCGATTG
TCAAGGTACGGGCGTCGTCACCGTTCGAAAGCGATAG
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protein sequence of Gchil4470.t1

>Gchil4470.t1 ID=Gchil4470.t1|Name=Gchil4470.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=179bp
MPGEIAVRFINTPSGQPIVAAAKPGDNLLAVGDSVGVHIPRACQTGLCGS
CTCDVLDPSAPDGRQTVRACQTRAIPFNSSTELVVDVARMKVAARAKNPM
ARFENLDTEYVPRAPPRARGSATRQVQCRACASNGDVLCDACDGAGEDGG
YICALCAGTGSLRCGDCQGTGVVTVRKR*
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mRNA from alignment at tig00004426_pilon:460530..461066+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4470.t1 ID=Gchil4470.t1|Name=Gchil4470.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00004426_pilon:460530..461066+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGGCGAGATAGCCGTCCGCTTCATCAACACCCCGTCCGGCCAGCC
CATcgtcgccgccgccaaacccggcgacaacctgctcgccgtcggcgact
ccgtcggcgtcCACATCCCCCGCGCCTGCCAGACCGGTCTGTGCGGCTCG
TGCACCTGCGACGTTCTTGACCCCTCTGCCCCCGACGGCCGCCAAACCGT
GCGCGCCTGTCAGACGCGCGCCATTCCCTTCAACTCCTCCACTGAGCTTG
TTGTCGATGTCGCTCGCATGAAAGTTGCCGCGCGCGCCAAAAATCCCATG
GCCCGCTTTGAAAACCTCGACACGGAGTACGTGCCGCGCGCCCCGCCGAG
GGCCCGCGGCTCTGCCACACGCCAGGTGCAATGTCGAGCCTGTGCGAGCA
ACGGCGACGTTCTGTGCGACGCTTGCGACGGCGCTGGCGAGGACGGCGGC
TACATCTGTGCCCTTTGCGCGGGCACTGGCTCTCTTAGGTGCGGCGATTG
TCAAGGTACGGGCGTCGTCACCGTTCGAAAGCGATAG
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Coding sequence (CDS) from alignment at tig00004426_pilon:460530..461066+

>Gchil4470.t1 ID=Gchil4470.t1|Name=Gchil4470.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=537bp|location=Sequence derived from alignment at tig00004426_pilon:460530..461066+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGGCGAGATAGCCGTCCGCTTCATCAACACCCCGTCCGGCCAGCC
CATcgtcgccgccgccaaacccggcgacaacctgctcgccgtcggcgact
ccgtcggcgtcCACATCCCCCGCGCCTGCCAGACCGGTCTGTGCGGCTCG
TGCACCTGCGACGTTCTTGACCCCTCTGCCCCCGACGGCCGCCAAACCGT
GCGCGCCTGTCAGACGCGCGCCATTCCCTTCAACTCCTCCACTGAGCTTG
TTGTCGATGTCGCTCGCATGAAAGTTGCCGCGCGCGCCAAAAATCCCATG
GCCCGCTTTGAAAACCTCGACACGGAGTACGTGCCGCGCGCCCCGCCGAG
GGCCCGCGGCTCTGCCACACGCCAGGTGCAATGTCGAGCCTGTGCGAGCA
ACGGCGACGTTCTGTGCGACGCTTGCGACGGCGCTGGCGAGGACGGCGGC
TACATCTGTGCCCTTTGCGCGGGCACTGGCTCTCTTAGGTGCGGCGATTG
TCAAGGTACGGGCGTCGTCACCGTTCGAAAGCGATAG
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