Gchil4461.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4461.t1
Unique Name	Gchil4461.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	487

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004426_pilon	contig	tig00004426_pilon:436579..438039 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	91464.S7335_3628
PFAMs	Amidohydro_1
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00477
KEGG ko	ko:K12960
KEGG Reaction	R09660
KEGG Pathway	ko00270,ko01100,map00270,map01100
Evalue	5.63e-128
EggNOG OGs	COG0402@1\|root,COG0402@2\|Bacteria,1G32S@1117\|Cyanobacteria,1H45F@1129\|Synechococcus
EC	3.5.4.28,3.5.4.31
Description	Amidohydrolase family
COG category	F
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4461	Gchil4461	Gracilaria chilensis NLEC103_M9 male	gene	tig00004426_pilon 436579..438039 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4461.t1.start1	Gchil4461.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004426_pilon 436579..436581 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4461.t1.CDS1	Gchil4461.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004426_pilon 436579..438039 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4461.t1.exon1	Gchil4461.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004426_pilon 436579..438039 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4461.t1.stop1	Gchil4461.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004426_pilon 438037..438039 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4461.t1	Gchil4461.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004426_pilon 436579..438039 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004426_pilon:436579..438039+
coding sequence from alignment at tig00004426_pilon:436579..438039+

mRNA sequence

>Gchil4461.t1 ID=Gchil4461.t1|Name=Gchil4461.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=487bp
MLPPPSIPTQRVLLKDIALLWTGEQDQPLLTGCSIVVDSGIIQWVGPHNR
LPTSLRASPCTTVDMSACLVTPGLVNTHHHMFQSLTKCLARNDSLFDWLH
TLFPIWNFLTADMVYKSARFAIAELLLSGCTLTSDLLYLFPNDVRLDDTI
RAAKELGIRFHPCRGAMSVGEADGGLPPDTLVEHEGHILRDMRRVIDRYH
DPRDGAMVRIALAPCSPFSVSEQLMKSTAVMARSHTNVMLHTHFAENAAD
LEYMHTNVQKGLVEFLEHCGWNRSDCWFAHCVKLSDSDDDGRFESSLDYF
ERCGLGVSHCPTSNCRLGSGAAPVAEMVKRGMAVSIGVDGSASNDSGNLL
AEARMALMMARAREENAAALSTSDVLRMATSSGAEVLGRSDTGRIRAGMC
ADVAAWRLDSPSFAGSFHSHEAVLSALVLGNGGDLKAEWVMVNGVEVVRG
GELAGDKDMMTITREHQEAAVKLAAIASDQLARGVP*

spliced messenger RNA

>Gchil4461.t1 ID=Gchil4461.t1|Name=Gchil4461.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00004426_pilon:436579..438039+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCCCCACCTTCCATCCCCACACAGCGCGTCTTGCTCAAGGACAT
CGCCCTGCTCTGGACTGGCGAACAAGACCAACCCCTGCTTACCGGCTGCT
CAATCGTCGTCGATTCCGGCATCATTCAATGGGTCGGTCCCCATAACAGG
CTACCCACCTCGCTGCGCGCCTCCCCTTGCACCACCGTCGACATGAGCGC
CTGTCTCGTCACCCCTGGGCTCGTCAATACCCACCACCACATGTTTCAGA
GCCTTACCAAATGCCTTGCACGCAACGACTCCCTTTTCGACTGGCTGCAC
ACCCTCTTCCCCATCTGGAACTTTCTCACCGCTGACATGGTTTACAAGTC
CGCCCGATTCGCCATTGCCGAGCTGTTGCTGTCCGGCTGCACCCTCACGT
CTGACCTGCTCTACCTCTTCCCCAACGACGTCAGGCTGGACGACACCATC
CGCGCCGCAAAGGAACTGGGCATTCGCTTCCACCCGTGTCGCGGTGCCAT
GTCGGTGGGTGAGGCTGACGGCGGCCTGCCTCCGGACACCTTGGTAGAGC
ACGAAGGCCACATTCTGCGCGACATGCGCCGCGTTATCGACCGCTATCAC
GACCCGCGCGACGGCGCTATGGTGCGTATCGCCCTGGCACCGTGTTCGCC
CTTCAGCGTTTCTGAACAGCTCATGAAGAGCACGGCAGTCATGGCGCGCA
GTCACACCAACGTCATGCTGCACACCCACTTTGCCGAGAACGCTGCCGAC
CTCGAGTACATGCACACCAACGTCCAAAAGGGGCTGGTAGAGTTTTTGGA
GCACTGCGGCTGGAACCGCAGTGACTGTTGGTTTGCACACTGCGTCAAGT
TGAGCGACAGCGACGATGACGGCCGTTTCGAATCGTCGCTGGACTACTTT
GAGCGCTGCGGACTGGGCGTGTCGCACTGCCCGACATCTAATTGCCGACT
GGGGTCGGGCGCGGCGCCCGTGGCGGAGATGGTGAAGCGGGGCATGGCAG
TGAGCATCGGCGTGGACGGCTCGGCTAGCAACGACTCAGGCAACCTGCTG
GCGGAGGCGCGAATGGCGCTTATGATGGCGCGCGCACGCGAAGAGAACGC
CGCCGCGCTGAGCACGTCCGACGTGCTGCGCATGGCCACGTCGAGCGGCG
CGGAGGTGCTAGGACGCTCGGATACGGGACGCATTCGCGCAGGCATGTGC
GCGGATGTGGCTGCGTGGCGGCTCGACTCGCCGTCGTTCGCCGGCTCGTT
CCACAGCCATGAGGCAGTGCTGAGCGCGCTGGTGCTGGGCAACGGCGGCG
ACCTCAAGGCCGAGTGGGTTATGGTGAACGGTGTGGAGGTGGTGCGCGGA
GGGGAGCTGGCCGGCGACAAGGACATGATGACCATCACGCGGGAGCACCA
GGAGGCGGCCGTGAAGCTGGCGGCAATAGCGTCAGACCAACTGGCGCGTG
GCGTGCCATGA

protein sequence of Gchil4461.t1

>Gchil4461.t1 ID=Gchil4461.t1|Name=Gchil4461.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=487bp
MLPPPSIPTQRVLLKDIALLWTGEQDQPLLTGCSIVVDSGIIQWVGPHNR
LPTSLRASPCTTVDMSACLVTPGLVNTHHHMFQSLTKCLARNDSLFDWLH
TLFPIWNFLTADMVYKSARFAIAELLLSGCTLTSDLLYLFPNDVRLDDTI
RAAKELGIRFHPCRGAMSVGEADGGLPPDTLVEHEGHILRDMRRVIDRYH
DPRDGAMVRIALAPCSPFSVSEQLMKSTAVMARSHTNVMLHTHFAENAAD
LEYMHTNVQKGLVEFLEHCGWNRSDCWFAHCVKLSDSDDDGRFESSLDYF
ERCGLGVSHCPTSNCRLGSGAAPVAEMVKRGMAVSIGVDGSASNDSGNLL
AEARMALMMARAREENAAALSTSDVLRMATSSGAEVLGRSDTGRIRAGMC
ADVAAWRLDSPSFAGSFHSHEAVLSALVLGNGGDLKAEWVMVNGVEVVRG
GELAGDKDMMTITREHQEAAVKLAAIASDQLARGVP*

mRNA from alignment at tig00004426_pilon:436579..438039+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4461.t1 ID=Gchil4461.t1|Name=Gchil4461.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00004426_pilon:436579..438039+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCCCCCACCTTCCATCCCCACACAGCGCGTCTTGCTCAAGGACAT
CGCCCTGCTCTGGACTGGCGAACAAGACCAACCCCTGCTTACCGGCTGCT
CAATCGTCGTCGATTCCGGCATCATTCAATGGGTCGGTCCCCATAACAGG
CTACCCACCTCGCTGCGCGCCTCCCCTTGCACCACCGTCGACATGAGCGC
CTGTCTCGTCACCCCTGGGCTCGTCAATACCCACCACCACATGTTTCAGA
GCCTTACCAAATGCCTTGCACGCAACGACTCCCTTTTCGACTGGCTGCAC
ACCCTCTTCCCCATCTGGAACTTTCTCACCGCTGACATGGTTTACAAGTC
CGCCCGATTCGCCATTGCCGAGCTGTTGCTGTCCGGCTGCACCCTCACGT
CTGACCTGCTCTACCTCTTCCCCAACGACGTCAGGCTGGACGACACCATC
CGCGCCGCAAAGGAACTGGGCATTCGCTTCCACCCGTGTCGCGGTGCCAT
GTCGGTGGGTGAGGCTGACGGCGGCCTGCCTCCGGACACCTTGGTAGAGC
ACGAAGGCCACATTCTGCGCGACATGCGCCGCGTTATCGACCGCTATCAC
GACCCGCGCGACGGCGCTATGGTGCGTATCGCCCTGGCACCGTGTTCGCC
CTTCAGCGTTTCTGAACAGCTCATGAAGAGCACGGCAGTCATGGCGCGCA
GTCACACCAACGTCATGCTGCACACCCACTTTGCCGAGAACGCTGCCGAC
CTCGAGTACATGCACACCAACGTCCAAAAGGGGCTGGTAGAGTTTTTGGA
GCACTGCGGCTGGAACCGCAGTGACTGTTGGTTTGCACACTGCGTCAAGT
TGAGCGACAGCGACGATGACGGCCGTTTCGAATCGTCGCTGGACTACTTT
GAGCGCTGCGGACTGGGCGTGTCGCACTGCCCGACATCTAATTGCCGACT
GGGGTCGGGCGCGGCGCCCGTGGCGGAGATGGTGAAGCGGGGCATGGCAG
TGAGCATCGGCGTGGACGGCTCGGCTAGCAACGACTCAGGCAACCTGCTG
GCGGAGGCGCGAATGGCGCTTATGATGGCGCGCGCACGCGAAGAGAACGC
CGCCGCGCTGAGCACGTCCGACGTGCTGCGCATGGCCACGTCGAGCGGCG
CGGAGGTGCTAGGACGCTCGGATACGGGACGCATTCGCGCAGGCATGTGC
GCGGATGTGGCTGCGTGGCGGCTCGACTCGCCGTCGTTCGCCGGCTCGTT
CCACAGCCATGAGGCAGTGCTGAGCGCGCTGGTGCTGGGCAACGGCGGCG
ACCTCAAGGCCGAGTGGGTTATGGTGAACGGTGTGGAGGTGGTGCGCGGA
GGGGAGCTGGCCGGCGACAAGGACATGATGACCATCACGCGGGAGCACCA
GGAGGCGGCCGTGAAGCTGGCGGCAATAGCGTCAGACCAACTGGCGCGTG
GCGTGCCATGA

Coding sequence (CDS) from alignment at tig00004426_pilon:436579..438039+

>Gchil4461.t1 ID=Gchil4461.t1|Name=Gchil4461.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1461bp|location=Sequence derived from alignment at tig00004426_pilon:436579..438039+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCCCCCACCTTCCATCCCCACACAGCGCGTCTTGCTCAAGGACAT
CGCCCTGCTCTGGACTGGCGAACAAGACCAACCCCTGCTTACCGGCTGCT
CAATCGTCGTCGATTCCGGCATCATTCAATGGGTCGGTCCCCATAACAGG
CTACCCACCTCGCTGCGCGCCTCCCCTTGCACCACCGTCGACATGAGCGC
CTGTCTCGTCACCCCTGGGCTCGTCAATACCCACCACCACATGTTTCAGA
GCCTTACCAAATGCCTTGCACGCAACGACTCCCTTTTCGACTGGCTGCAC
ACCCTCTTCCCCATCTGGAACTTTCTCACCGCTGACATGGTTTACAAGTC
CGCCCGATTCGCCATTGCCGAGCTGTTGCTGTCCGGCTGCACCCTCACGT
CTGACCTGCTCTACCTCTTCCCCAACGACGTCAGGCTGGACGACACCATC
CGCGCCGCAAAGGAACTGGGCATTCGCTTCCACCCGTGTCGCGGTGCCAT
GTCGGTGGGTGAGGCTGACGGCGGCCTGCCTCCGGACACCTTGGTAGAGC
ACGAAGGCCACATTCTGCGCGACATGCGCCGCGTTATCGACCGCTATCAC
GACCCGCGCGACGGCGCTATGGTGCGTATCGCCCTGGCACCGTGTTCGCC
CTTCAGCGTTTCTGAACAGCTCATGAAGAGCACGGCAGTCATGGCGCGCA
GTCACACCAACGTCATGCTGCACACCCACTTTGCCGAGAACGCTGCCGAC
CTCGAGTACATGCACACCAACGTCCAAAAGGGGCTGGTAGAGTTTTTGGA
GCACTGCGGCTGGAACCGCAGTGACTGTTGGTTTGCACACTGCGTCAAGT
TGAGCGACAGCGACGATGACGGCCGTTTCGAATCGTCGCTGGACTACTTT
GAGCGCTGCGGACTGGGCGTGTCGCACTGCCCGACATCTAATTGCCGACT
GGGGTCGGGCGCGGCGCCCGTGGCGGAGATGGTGAAGCGGGGCATGGCAG
TGAGCATCGGCGTGGACGGCTCGGCTAGCAACGACTCAGGCAACCTGCTG
GCGGAGGCGCGAATGGCGCTTATGATGGCGCGCGCACGCGAAGAGAACGC
CGCCGCGCTGAGCACGTCCGACGTGCTGCGCATGGCCACGTCGAGCGGCG
CGGAGGTGCTAGGACGCTCGGATACGGGACGCATTCGCGCAGGCATGTGC
GCGGATGTGGCTGCGTGGCGGCTCGACTCGCCGTCGTTCGCCGGCTCGTT
CCACAGCCATGAGGCAGTGCTGAGCGCGCTGGTGCTGGGCAACGGCGGCG
ACCTCAAGGCCGAGTGGGTTATGGTGAACGGTGTGGAGGTGGTGCGCGGA
GGGGAGCTGGCCGGCGACAAGGACATGATGACCATCACGCGGGAGCACCA
GGAGGCGGCCGTGAAGCTGGCGGCAATAGCGTCAGACCAACTGGCGCGTG
GCGTGCCATGA