Gchil4457.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4457.t1
Unique NameGchil4457.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length149
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:430437..430883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_05543T0
Preferred nameHDDC2
PFAMsHD_3
Max annot lvl33154|Opisthokonta
KEGG koko:K07023
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0008150,GO:0016787,GO:0016788,GO:0030431,GO:0032501,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Evalue1.03e-38
EggNOG OGsCOG1896@1|root,KOG3197@2759|Eukaryota,38FZH@33154|Opisthokonta
DescriptionHD domain
COG categoryF
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4457Gchil4457Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 430437..430883 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4457.t1.start1Gchil4457.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 430437..430439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4457.t1.CDS1Gchil4457.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 430437..430883 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4457.t1.exon1Gchil4457.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 430437..430883 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4457.t1.stop1Gchil4457.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 430881..430883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4457.t1Gchil4457.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 430437..430883 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4457.t1 ID=Gchil4457.t1|Name=Gchil4457.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=149bp
MYRMALIAFTIPHKNRDHLIRMALVHDLAECIVGDITPHDNVSKEQKRQM
EDDAMRHIRDDVLKGSQAGIELYELWKEYEDGTTEEAKLMKDIDKFEMIL
QADEYERAQDIKLQEFFDSTRDIFETQVVSGLDKQLREDRGKNATPDE*
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spliced messenger RNA

>Gchil4457.t1 ID=Gchil4457.t1|Name=Gchil4457.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=447bp|location=Sequence derived from alignment at tig00004426_pilon:430437..430883+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCGGATGGCGTTGATAGCCTTTACAATACCGCACAAAAACCGCGA
CCACTTGATCCGAATGGCTTTGGTGCACGATCTGGCGGAATGCATTGTCG
GTGATATTACGCCACATGACAACGTTTCAAAAGAACAAAAACGACAGATG
GAAGACGACGCAATGCGTCATATTCGCGATGATGTTCTGAAAGGAAGTCA
AGCTGGAATAGAATTATATGAGTTGTGGAAGGAGTATGAAGATGGGACCA
CAGAAGAGGCAAAACTCATGAAGGACATCGACAAGTTTGAAATGATTTTG
CAAGCAGATGAATACGAACGTGCTCAGGATATCAAACTTCAAGAGTTTTT
TGATAGCACGAGGGATATCTTCGAAACTCAAGTCGTGAGTGGGCTTGACA
AACAACTCCGCGAGGATAGAGGCAAAAACGCAACACCAGATGAGTAA
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protein sequence of Gchil4457.t1

>Gchil4457.t1 ID=Gchil4457.t1|Name=Gchil4457.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=149bp
MYRMALIAFTIPHKNRDHLIRMALVHDLAECIVGDITPHDNVSKEQKRQM
EDDAMRHIRDDVLKGSQAGIELYELWKEYEDGTTEEAKLMKDIDKFEMIL
QADEYERAQDIKLQEFFDSTRDIFETQVVSGLDKQLREDRGKNATPDE*
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mRNA from alignment at tig00004426_pilon:430437..430883+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4457.t1 ID=Gchil4457.t1|Name=Gchil4457.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=447bp|location=Sequence derived from alignment at tig00004426_pilon:430437..430883+ (Gracilaria chilensis NLEC103_M9 male)
ATGTATCGGATGGCGTTGATAGCCTTTACAATACCGCACAAAAACCGCGA
CCACTTGATCCGAATGGCTTTGGTGCACGATCTGGCGGAATGCATTGTCG
GTGATATTACGCCACATGACAACGTTTCAAAAGAACAAAAACGACAGATG
GAAGACGACGCAATGCGTCATATTCGCGATGATGTTCTGAAAGGAAGTCA
AGCTGGAATAGAATTATATGAGTTGTGGAAGGAGTATGAAGATGGGACCA
CAGAAGAGGCAAAACTCATGAAGGACATCGACAAGTTTGAAATGATTTTG
CAAGCAGATGAATACGAACGTGCTCAGGATATCAAACTTCAAGAGTTTTT
TGATAGCACGAGGGATATCTTCGAAACTCAAGTCGTGAGTGGGCTTGACA
AACAACTCCGCGAGGATAGAGGCAAAAACGCAACACCAGATGAGTAA
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Coding sequence (CDS) from alignment at tig00004426_pilon:430437..430883+

>Gchil4457.t1 ID=Gchil4457.t1|Name=Gchil4457.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=447bp|location=Sequence derived from alignment at tig00004426_pilon:430437..430883+ (Gracilaria chilensis NLEC103_M9 male)
ATGTATCGGATGGCGTTGATAGCCTTTACAATACCGCACAAAAACCGCGA
CCACTTGATCCGAATGGCTTTGGTGCACGATCTGGCGGAATGCATTGTCG
GTGATATTACGCCACATGACAACGTTTCAAAAGAACAAAAACGACAGATG
GAAGACGACGCAATGCGTCATATTCGCGATGATGTTCTGAAAGGAAGTCA
AGCTGGAATAGAATTATATGAGTTGTGGAAGGAGTATGAAGATGGGACCA
CAGAAGAGGCAAAACTCATGAAGGACATCGACAAGTTTGAAATGATTTTG
CAAGCAGATGAATACGAACGTGCTCAGGATATCAAACTTCAAGAGTTTTT
TGATAGCACGAGGGATATCTTCGAAACTCAAGTCGTGAGTGGGCTTGACA
AACAACTCCGCGAGGATAGAGGCAAAAACGCAACACCAGATGAGTAA
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