Gchil4452.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4452.t1
Unique NameGchil4452.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:419803..420409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog118163.Ple7327_0286
PFAMsNTP_transf_9
Max annot lvl1117|Cyanobacteria
Evalue4.33e-07
EggNOG OGsCOG2343@1|root,COG2343@2|Bacteria,1G7U6@1117|Cyanobacteria,3VJZT@52604|Pleurocapsales
DescriptionDomain of unknown function (DUF427)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4452Gchil4452Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 419803..420409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4452.t1Gchil4452.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 419803..420409 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4452.t1.stop1Gchil4452.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 419803..419805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4452.t1.CDS1Gchil4452.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 419803..420084 -
Gchil4452.t1.CDS2Gchil4452.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 420152..420409 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4452.t1.exon1Gchil4452.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 419803..420084 -
Gchil4452.t1.exon2Gchil4452.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 420152..420409 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4452.t1.intron1Gchil4452.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 420085..420151 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4452.t1.start1Gchil4452.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 420407..420409 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4452.t1 ID=Gchil4452.t1|Name=Gchil4452.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=180bp
MYEPPSAFAPCRFAPRRSQLHTSTTSYKTQPPVCVRRRPSNTDHAKQSVK
PQKKPRPKTFDNNHKRARPIQAIWSGHVIAQSTKYEFMDGRFFFPVSSVN
WELVEKTEKTRHHNPIGKMGMHDIVIPLSKKHGKVLRNRAAVFSFQKLKR
QFERLQGYTCFWKGVRIVAMDRTQQRRRG*
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spliced messenger RNA

>Gchil4452.t1 ID=Gchil4452.t1|Name=Gchil4452.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00004426_pilon:419803..420409- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGAACCGCCCTCCGCGTTCGCGCCCTGCCGCTTCGCGCCGCGTCG
CAGCCAGCTTCACACATCCACAACTTCTTATAAAACTCAGCCGCCGGTTT
GTGTGCGCCGACGCCCGTCGAACACGGACCACGCAAAGCAGTCCGTCAAA
CCGCAGAAGAAACCTCGCCCAAAGACCTTCGACAACAATCACAAGCGCGC
GCGCCCAATCCAGGCCATCTGGAGCGGCCATGTCATTGCGCAAAGCACCA
AGTACGAGTTCATGGATGGGCGATTTTTCTTCCCTGTTAGTAGTGTGAAT
TGGGAGCTTGTCGAAAAGACCGAAAAGACTAGGCATCACAACCCCATTGG
AAAGATGGGAATGCATGATATCGTGATTCCTTTGAGCAAGAAGCATGGTA
AAGTGCTTAGAAACCGTGCGGCTGTATTCTCATTTCAGAAATTGAAGCGA
CAGTTCGAAAGGCTCCAAGGCTATACATGCTTTTGGAAAGGTGTCCGGAT
TGTGGCCATGGATCGTACCCAACAACGGCGAAGAGGATGA
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protein sequence of Gchil4452.t1

>Gchil4452.t1 ID=Gchil4452.t1|Name=Gchil4452.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=180bp
MYEPPSAFAPCRFAPRRSQLHTSTTSYKTQPPVCVRRRPSNTDHAKQSVK
PQKKPRPKTFDNNHKRARPIQAIWSGHVIAQSTKYEFMDGRFFFPVSSVN
WELVEKTEKTRHHNPIGKMGMHDIVIPLSKKHGKVLRNRAAVFSFQKLKR
QFERLQGYTCFWKGVRIVAMDRTQQRRRG*
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mRNA from alignment at tig00004426_pilon:419803..420409-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4452.t1 ID=Gchil4452.t1|Name=Gchil4452.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=607bp|location=Sequence derived from alignment at tig00004426_pilon:419803..420409- (Gracilaria chilensis NLEC103_M9 male)
ATGTACGAACCGCCCTCCGCGTTCGCGCCCTGCCGCTTCGCGCCGCGTCG
CAGCCAGCTTCACACATCCACAACTTCTTATAAAACTCAGCCGCCGGTTT
GTGTGCGCCGACGCCCGTCGAACACGGACCACGCAAAGCAGTCCGTCAAA
CCGCAGAAGAAACCTCGCCCAAAGACCTTCGACAACAATCACAAGCGCGC
GCGCCCAATCCAGGCCATCTGGAGCGGCCATGTCATTGCGCAAAGCACCA
AGTACGAGGTATGAATGGCAACCCCTGCGCCACCGCTTCCCTTGCGCCTG
CGAGATGGTGGCTGACTTGACCCAGTTCATGGATGGGCGATTTTTCTTCC
CTGTTAGTAGTGTGAATTGGGAGCTTGTCGAAAAGACCGAAAAGACTAGG
CATCACAACCCCATTGGAAAGATGGGAATGCATGATATCGTGATTCCTTT
GAGCAAGAAGCATGGTAAAGTGCTTAGAAACCGTGCGGCTGTATTCTCAT
TTCAGAAATTGAAGCGACAGTTCGAAAGGCTCCAAGGCTATACATGCTTT
TGGAAAGGTGTCCGGATTGTGGCCATGGATCGTACCCAACAACGGCGAAG
AGGATGA
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Coding sequence (CDS) from alignment at tig00004426_pilon:419803..420409-

>Gchil4452.t1 ID=Gchil4452.t1|Name=Gchil4452.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=540bp|location=Sequence derived from alignment at tig00004426_pilon:419803..420409- (Gracilaria chilensis NLEC103_M9 male)
ATGTACGAACCGCCCTCCGCGTTCGCGCCCTGCCGCTTCGCGCCGCGTCG
CAGCCAGCTTCACACATCCACAACTTCTTATAAAACTCAGCCGCCGGTTT
GTGTGCGCCGACGCCCGTCGAACACGGACCACGCAAAGCAGTCCGTCAAA
CCGCAGAAGAAACCTCGCCCAAAGACCTTCGACAACAATCACAAGCGCGC
GCGCCCAATCCAGGCCATCTGGAGCGGCCATGTCATTGCGCAAAGCACCA
AGTACGAGTTCATGGATGGGCGATTTTTCTTCCCTGTTAGTAGTGTGAAT
TGGGAGCTTGTCGAAAAGACCGAAAAGACTAGGCATCACAACCCCATTGG
AAAGATGGGAATGCATGATATCGTGATTCCTTTGAGCAAGAAGCATGGTA
AAGTGCTTAGAAACCGTGCGGCTGTATTCTCATTTCAGAAATTGAAGCGA
CAGTTCGAAAGGCTCCAAGGCTATACATGCTTTTGGAAAGGTGTCCGGAT
TGTGGCCATGGATCGTACCCAACAACGGCGAAGAGGATGA
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