Gchil4451.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4451.t1
Unique Name	Gchil4451.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	490

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004426_pilon	contig	tig00004426_pilon:360226..361695 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	218851.Aquca_014_00661.1
PFAMs	Methyltransf_29
Max annot lvl	35493\|Streptophyta
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0012505,GO:0016740,GO:0016741,GO:0031410,GO:0031982,GO:0031984,GO:0032259,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098791
Evalue	1.24e-16
EggNOG OGs	28I6U@1\|root,2QTJJ@2759\|Eukaryota,37M9Q@33090\|Viridiplantae,3GB2X@35493\|Streptophyta
Description	methyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4451	Gchil4451	Gracilaria chilensis NLEC103_M9 male	gene	tig00004426_pilon 360226..361695 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4451.t1.start1	Gchil4451.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004426_pilon 360226..360228 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4451.t1.CDS1	Gchil4451.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004426_pilon 360226..361695 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4451.t1.exon1	Gchil4451.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004426_pilon 360226..361695 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4451.t1.stop1	Gchil4451.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004426_pilon 361693..361695 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4451.t1	Gchil4451.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004426_pilon 360226..361695 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004426_pilon:360226..361695+
coding sequence from alignment at tig00004426_pilon:360226..361695+

mRNA sequence

>Gchil4451.t1 ID=Gchil4451.t1|Name=Gchil4451.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=490bp
MKGGIYLLRLIRLVIFVLVLLTCIRPFRPRFFPKISTCADPFYVRVPHTL
NTPHTPSLWPCVVKPPLNYTPPLPRPRSLWRTPLANVGELDTSNSEYRLH
LANQRWARLERHEINIREEGGTSGRSFANNFEYVKFLIQKLKPIRRCAPN
APYVMLDMGAGIGSVAAALADERGGDGAIKALSYVWPDDYLRLQTIISDR
GLPSFLANFTGSLPFPSSSFDIVHCKWCWHHNAGYDVWLKEVNRLLVPGG
FFIFTFAPEATELLKHPAWEKALARQPFKCKRVHRIITMCQKNRTLDKKN
SDGDRFRKADYCPRDVKRSIMRSNKELKDGLQHAEQDLVLVAESVKALTK
DSTVRLLSVNCPHAQLCVGLDSVPNSSVLHVNHASQKQVVKGILSLGGLA
MLQNWKNNVPVYPRSFDVIHLGCNPRSKHLLERPEFWLELHRVLRPGGIV
TLAKSFCRWYFKKTFSPLGFKTKKISKHFFVANRLEMFN*

spliced messenger RNA

>Gchil4451.t1 ID=Gchil4451.t1|Name=Gchil4451.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00004426_pilon:360226..361695+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGGTGGGATATATCTATTGCGTCTTATTCGACTTGTGATATTTGT
CCTGGTTTTGTTGACATGTATTCGTCCGTTCAGGCCGCGCTTCTTCCCGA
AGATATCTACGTGTGCAGATCCATTTTATGTGAGAGTACCACACACCCTC
AATACCCCACACACCCCATCACTCTGGCCGTGCGTTGTTAAACCTCCATT
GAACTACACACCACCTCTTCCCCGTCCTCGTTCGCTTTGGCGTACTCCGC
TGGCCAACGTCGGTGAGCTCGATACAAGCAATTCTGAGTACCGGCTTCAT
TTGGCGAACCAAAGATGGGCACGATTAGAGAGACACGAAATCAACATTCG
CGAAGAGGGTGGAACTTCTGGTAGATCGTTTGCAAACAACTTTGAGTACG
TGAAGTTCCTAATTCAGAAGCTCAAGCCCATACGCCGCTGTGCTCCGAAT
GCCCCTTACGTGATGCTGGATATGGGAGCCGGTATAGGATCTGTTGCCGC
CGCTCTAGCTGATGAACGGGGTGGTGACGGGGCAATCAAAGCGCTTTCTT
ATGTTTGGCCGGACGATTACCTCCGATTGCAAACGATCATCTCTGACAGA
GGGCTCCCTTCTTTCTTGGCAAATTTTACAGGATCTTTACCATTTCCGTC
ATCGTCGTTTGATATCGTGCACTGCAAATGGTGCTGGCACCACAACGCAG
GTTACGACGTATGGCTGAAGGAAGTGAACCGACTGTTGGTACCCGGGGGG
TTCTTCATTTTCACGTTTGCTCCAGAAGCCACAGAGTTGTTGAAGCACCC
AGCCTGGGAGAAAGCATTGGCAAGACAACCGTTCAAATGCAAAAGAGTAC
ATAGAATCATTACAATGTGCCAGAAAAACCGCACCCTGGACAAGAAGAAT
AGCGACGGAGACCGTTTTCGAAAAGCAGACTACTGCCCCAGGGATGTGAA
GAGATCTATAATGAGATCGAACAAGGAACTGAAAGACGGACTTCAGCATG
CAGAGCAAGACCTTGTGTTGGTGGCTGAATCGGTGAAAGCGCTGACCAAG
GATAGTACAGTGAGACTTCTGAGTGTCAACTGCCCACACGCTCAACTCTG
CGTAGGTTTAGATTCCGTTCCCAATTCTAGTGTGTTACATGTGAATCATG
CATCCCAAAAGCAGGTGGTGAAAGGAATTCTCAGCCTTGGGGGCCTGGCA
ATGTTGCAAAACTGGAAGAACAATGTTCCAGTGTACCCGCGATCATTTGA
TGTCATCCATCTCGGTTGCAACCCGCGTTCAAAACACCTTCTTGAGCGAC
CAGAGTTCTGGTTGGAACTACATCGGGTTCTCAGACCTGGTGGTATTGTG
ACACTCGCAAAGAGCTTTTGTCGATGGTACTTCAAGAAGACTTTTAGTCC
ATTAGGGTTTAAGACAAAGAAGATTTCGAAGCATTTCTTTGTAGCGAATA
GACTTGAGATGTTCAACTAG

protein sequence of Gchil4451.t1

>Gchil4451.t1 ID=Gchil4451.t1|Name=Gchil4451.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=490bp
MKGGIYLLRLIRLVIFVLVLLTCIRPFRPRFFPKISTCADPFYVRVPHTL
NTPHTPSLWPCVVKPPLNYTPPLPRPRSLWRTPLANVGELDTSNSEYRLH
LANQRWARLERHEINIREEGGTSGRSFANNFEYVKFLIQKLKPIRRCAPN
APYVMLDMGAGIGSVAAALADERGGDGAIKALSYVWPDDYLRLQTIISDR
GLPSFLANFTGSLPFPSSSFDIVHCKWCWHHNAGYDVWLKEVNRLLVPGG
FFIFTFAPEATELLKHPAWEKALARQPFKCKRVHRIITMCQKNRTLDKKN
SDGDRFRKADYCPRDVKRSIMRSNKELKDGLQHAEQDLVLVAESVKALTK
DSTVRLLSVNCPHAQLCVGLDSVPNSSVLHVNHASQKQVVKGILSLGGLA
MLQNWKNNVPVYPRSFDVIHLGCNPRSKHLLERPEFWLELHRVLRPGGIV
TLAKSFCRWYFKKTFSPLGFKTKKISKHFFVANRLEMFN*

mRNA from alignment at tig00004426_pilon:360226..361695+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4451.t1 ID=Gchil4451.t1|Name=Gchil4451.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00004426_pilon:360226..361695+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGGTGGGATATATCTATTGCGTCTTATTCGACTTGTGATATTTGT
CCTGGTTTTGTTGACATGTATTCGTCCGTTCAGGCCGCGCTTCTTCCCGA
AGATATCTACGTGTGCAGATCCATTTTATGTGAGAGTACCACACACCCTC
AATACCCCACACACCCCATCACTCTGGCCGTGCGTTGTTAAACCTCCATT
GAACTACACACCACCTCTTCCCCGTCCTCGTTCGCTTTGGCGTACTCCGC
TGGCCAACGTCGGTGAGCTCGATACAAGCAATTCTGAGTACCGGCTTCAT
TTGGCGAACCAAAGATGGGCACGATTAGAGAGACACGAAATCAACATTCG
CGAAGAGGGTGGAACTTCTGGTAGATCGTTTGCAAACAACTTTGAGTACG
TGAAGTTCCTAATTCAGAAGCTCAAGCCCATACGCCGCTGTGCTCCGAAT
GCCCCTTACGTGATGCTGGATATGGGAGCCGGTATAGGATCTGTTGCCGC
CGCTCTAGCTGATGAACGGGGTGGTGACGGGGCAATCAAAGCGCTTTCTT
ATGTTTGGCCGGACGATTACCTCCGATTGCAAACGATCATCTCTGACAGA
GGGCTCCCTTCTTTCTTGGCAAATTTTACAGGATCTTTACCATTTCCGTC
ATCGTCGTTTGATATCGTGCACTGCAAATGGTGCTGGCACCACAACGCAG
GTTACGACGTATGGCTGAAGGAAGTGAACCGACTGTTGGTACCCGGGGGG
TTCTTCATTTTCACGTTTGCTCCAGAAGCCACAGAGTTGTTGAAGCACCC
AGCCTGGGAGAAAGCATTGGCAAGACAACCGTTCAAATGCAAAAGAGTAC
ATAGAATCATTACAATGTGCCAGAAAAACCGCACCCTGGACAAGAAGAAT
AGCGACGGAGACCGTTTTCGAAAAGCAGACTACTGCCCCAGGGATGTGAA
GAGATCTATAATGAGATCGAACAAGGAACTGAAAGACGGACTTCAGCATG
CAGAGCAAGACCTTGTGTTGGTGGCTGAATCGGTGAAAGCGCTGACCAAG
GATAGTACAGTGAGACTTCTGAGTGTCAACTGCCCACACGCTCAACTCTG
CGTAGGTTTAGATTCCGTTCCCAATTCTAGTGTGTTACATGTGAATCATG
CATCCCAAAAGCAGGTGGTGAAAGGAATTCTCAGCCTTGGGGGCCTGGCA
ATGTTGCAAAACTGGAAGAACAATGTTCCAGTGTACCCGCGATCATTTGA
TGTCATCCATCTCGGTTGCAACCCGCGTTCAAAACACCTTCTTGAGCGAC
CAGAGTTCTGGTTGGAACTACATCGGGTTCTCAGACCTGGTGGTATTGTG
ACACTCGCAAAGAGCTTTTGTCGATGGTACTTCAAGAAGACTTTTAGTCC
ATTAGGGTTTAAGACAAAGAAGATTTCGAAGCATTTCTTTGTAGCGAATA
GACTTGAGATGTTCAACTAG

Coding sequence (CDS) from alignment at tig00004426_pilon:360226..361695+

>Gchil4451.t1 ID=Gchil4451.t1|Name=Gchil4451.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1470bp|location=Sequence derived from alignment at tig00004426_pilon:360226..361695+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGGTGGGATATATCTATTGCGTCTTATTCGACTTGTGATATTTGT
CCTGGTTTTGTTGACATGTATTCGTCCGTTCAGGCCGCGCTTCTTCCCGA
AGATATCTACGTGTGCAGATCCATTTTATGTGAGAGTACCACACACCCTC
AATACCCCACACACCCCATCACTCTGGCCGTGCGTTGTTAAACCTCCATT
GAACTACACACCACCTCTTCCCCGTCCTCGTTCGCTTTGGCGTACTCCGC
TGGCCAACGTCGGTGAGCTCGATACAAGCAATTCTGAGTACCGGCTTCAT
TTGGCGAACCAAAGATGGGCACGATTAGAGAGACACGAAATCAACATTCG
CGAAGAGGGTGGAACTTCTGGTAGATCGTTTGCAAACAACTTTGAGTACG
TGAAGTTCCTAATTCAGAAGCTCAAGCCCATACGCCGCTGTGCTCCGAAT
GCCCCTTACGTGATGCTGGATATGGGAGCCGGTATAGGATCTGTTGCCGC
CGCTCTAGCTGATGAACGGGGTGGTGACGGGGCAATCAAAGCGCTTTCTT
ATGTTTGGCCGGACGATTACCTCCGATTGCAAACGATCATCTCTGACAGA
GGGCTCCCTTCTTTCTTGGCAAATTTTACAGGATCTTTACCATTTCCGTC
ATCGTCGTTTGATATCGTGCACTGCAAATGGTGCTGGCACCACAACGCAG
GTTACGACGTATGGCTGAAGGAAGTGAACCGACTGTTGGTACCCGGGGGG
TTCTTCATTTTCACGTTTGCTCCAGAAGCCACAGAGTTGTTGAAGCACCC
AGCCTGGGAGAAAGCATTGGCAAGACAACCGTTCAAATGCAAAAGAGTAC
ATAGAATCATTACAATGTGCCAGAAAAACCGCACCCTGGACAAGAAGAAT
AGCGACGGAGACCGTTTTCGAAAAGCAGACTACTGCCCCAGGGATGTGAA
GAGATCTATAATGAGATCGAACAAGGAACTGAAAGACGGACTTCAGCATG
CAGAGCAAGACCTTGTGTTGGTGGCTGAATCGGTGAAAGCGCTGACCAAG
GATAGTACAGTGAGACTTCTGAGTGTCAACTGCCCACACGCTCAACTCTG
CGTAGGTTTAGATTCCGTTCCCAATTCTAGTGTGTTACATGTGAATCATG
CATCCCAAAAGCAGGTGGTGAAAGGAATTCTCAGCCTTGGGGGCCTGGCA
ATGTTGCAAAACTGGAAGAACAATGTTCCAGTGTACCCGCGATCATTTGA
TGTCATCCATCTCGGTTGCAACCCGCGTTCAAAACACCTTCTTGAGCGAC
CAGAGTTCTGGTTGGAACTACATCGGGTTCTCAGACCTGGTGGTATTGTG
ACACTCGCAAAGAGCTTTTGTCGATGGTACTTCAAGAAGACTTTTAGTCC
ATTAGGGTTTAAGACAAAGAAGATTTCGAAGCATTTCTTTGTAGCGAATA
GACTTGAGATGTTCAACTAG