Gchil4446.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4446.t1
Unique NameGchil4446.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length496
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:347641..349128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704469.1
Preferred nameSHM2
PFAMsSHMT
Max annot lvl2759|Eukaryota
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600,ko:K02974
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,ko03010,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523,map03010
KEGG ModuleM00140,M00141,M00177,M00179,M00346,M00532
GOsGO:0001505,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0004372,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005759,GO:0005829,GO:0005840,GO:0005886,GO:0005937,GO:0006082,GO:0006520,GO:0006544,GO:0006563,GO:0006730,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007623,GO:0008150,GO:0008152,GO:0008187,GO:0008219,GO:0008266,GO:0008270,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009626,GO:0009628,GO:0009853,GO:0009987,GO:0010035,GO:0010038,GO:0010319,GO:0012501,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0016742,GO:0017144,GO:0019752,GO:0019866,GO:0022626,GO:0030427,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0033554,GO:0034050,GO:0042133,GO:0042221,GO:0042995,GO:0043094,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043332,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044455,GO:0044463,GO:0044464,GO:0045087,GO:0045271,GO:0046394,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0048511,GO:0050896,GO:0050897,GO:0051286,GO:0051716,GO:0065007,GO:0065008,GO:0070013,GO:0070469,GO:0071704,GO:0071944,GO:0097159,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0120025,GO:0120038,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990204,GO:1990904
Evalue2.43e-233
EggNOG OGsCOG0112@1|root,KOG2467@2759|Eukaryota
EC2.1.2.1
Descriptionglycine hydroxymethyltransferase activity
COG categoryH
BiGG ReactioniMM904.YBR263W,iND750.YBR263W
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4446Gchil4446Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 347641..349128 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4446.t1.stop1Gchil4446.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 347641..347643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4446.t1.CDS1Gchil4446.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 347641..349128 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4446.t1.exon1Gchil4446.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 347641..349128 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4446.t1.start1Gchil4446.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 349126..349128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4446.t1Gchil4446.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 347641..349128 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4446.t1 ID=Gchil4446.t1|Name=Gchil4446.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=496bp
MLRSTFLRNVSRRLLATPAVTPTAAAPSTLNSPLAEVDPELFDIIEHEKA
RQIKSIQLIPSENFTSRAVLEAVGSVMTNKYSEGYPGARYYGGNEFIDMS
ERLCQKRALEAFRVSPDEWGVNVQALSGSPSNLAVYTALLKPHDRILSLD
LPHGGHLSHGFMTAKKRVSATSIFFESMPYRLNESNGLIDYDKLEESAIL
FRPKIIIAGASAYSRLYDYPRMRAIADKVGAYLLADIAHISGLVAAGVIP
SPFEYADVITTTTHKALRGPRGALIFFRRGVRSVNKKGEEIMYNLENPIN
SAVFPGLQGGPHNHTIAALAVALKMAQEPEFVNYQQKVLDNAQVLAKGLI
DRGYDLVSGGTDNHLMLANLRTRDMDGARAERVLELAGIALNKNTVPGDT
SAFNPGGIRMGTHAMTTRGCDTEDFESIAGYLHRGIAIAAQVKKDLGSGA
KMSEFREAVDNGAGEAEIKALREEVEEFSLAFEPIGFDRADMVYQ*
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spliced messenger RNA

>Gchil4446.t1 ID=Gchil4446.t1|Name=Gchil4446.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00004426_pilon:347641..349128- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCGTTCCACCTTCTTGCGAAACGTTTCGCGTCGCCTTCTGGCTAC
TCCAGCTGTCACTCCCACTGCCGCTGCCCCGTCCACTCTGAATTCGCCTC
TAGCGGAAGTCGATCCAGAGCTGTTCGATATCATCGAGCACGAGAAGGCT
CGTCAGATAAAATCGATTCAGTTGATTCCATCGGAGAACTTCACTTCTCG
TGCCGTACTGGAAGCCGTTGGCTCAGTGATGACCAACAAATACTCTGAGG
GATATCCCGGTGCGCGCTACTACGGAGGAAATGAATTCATTGATATGAGT
GAACGCTTATGCCAGAAGCGAGCTCTCGAGGCGTTCCGCGTCTCTCCTGA
TGAGTGGGGCGTGAACGTCCAAGCACTCTCAGGAAGTCCTTCTAATCTCG
CCGTATACACAGCTCTTCTCAAGCCGCATGACCGCATTCTCAGCCTTGAT
CTACCGCACGGGGGGCATCTGAGTCATGGTTTCATGACCGCCAAGAAGCG
CGTGAGCGCCACCTCTATTTTCTTCGAGTCCATGCCTTACCGACTCAACG
AAAGCAATGGACTGATTGACTATGACAAACTGGAAGAGTCAGCCATACTT
TTCAGACCGAAGATAATCATTGCTGGTGCTAGCGCATACTCCAGACTATA
CGATTACCCTCGCATGCGCGCGATAGCCGATAAGGTTGGTGCATATCTTC
TTGCCGATATCGCACACATTTCCGGTTTGGTTGCAGCTGGTGTTATTCCC
TCGCCGTTTGAATATGCGGACGTAATCACCACCACCACCCACAAGGCCCT
ACGTGGCCCGAGAGGAGCTCTGATTTTCTTCAGGAGGGGTGTTCGTTCCG
TCAATAAGAAAGGTGAGGAGATCATGTACAACCTCGAGAATCCCATTAAC
TCTGCTGTTTTCCCAGGATTACAGGGAGGGCCCCACAACCACACCATTGC
AGCCCTGGCCGTTGCGCTAAAGATGGCTCAAGAACCTGAATTTGTCAATT
ACCAACAGAAGGTGCTCGACAATGCCCAAGTACTTGCCAAGGGACTCATC
GACAGAGGTTACGACCTCGTTTCGGGCGGAACCGACAACCATCTTATGCT
GGCCAATCTGAGGACCAGGGATATGGATGGCGCTCGTGCGGAACGAGTTC
TGGAATTGGCTGGAATCGCATTGAACAAGAACACTGTCCCTGGCGACACA
AGCGCATTCAACCCCGGGGGTATCCGTATGGGCACGCATGCAATGACTAC
TAGAGGATGTGACACTGAGGACTTCGAGAGTATCGCAGGATATCTGCATC
GTGGAATCGCCATCGCAGCTCAGGTGAAGAAGGACCTGGGCTCTGGGGCA
AAGATGTCTGAATTCCGAGAAGCTGTAGACAACGGAGCTGGTGAAGCCGA
AATCAAAGCTTTGAGGGAAGAAGTGGAAGAGTTTTCCTTGGCATTTGAGC
CCATTGGGTTCGACCGGGCCGACATGGTCTATCAGTGA
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protein sequence of Gchil4446.t1

>Gchil4446.t1 ID=Gchil4446.t1|Name=Gchil4446.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=496bp
MLRSTFLRNVSRRLLATPAVTPTAAAPSTLNSPLAEVDPELFDIIEHEKA
RQIKSIQLIPSENFTSRAVLEAVGSVMTNKYSEGYPGARYYGGNEFIDMS
ERLCQKRALEAFRVSPDEWGVNVQALSGSPSNLAVYTALLKPHDRILSLD
LPHGGHLSHGFMTAKKRVSATSIFFESMPYRLNESNGLIDYDKLEESAIL
FRPKIIIAGASAYSRLYDYPRMRAIADKVGAYLLADIAHISGLVAAGVIP
SPFEYADVITTTTHKALRGPRGALIFFRRGVRSVNKKGEEIMYNLENPIN
SAVFPGLQGGPHNHTIAALAVALKMAQEPEFVNYQQKVLDNAQVLAKGLI
DRGYDLVSGGTDNHLMLANLRTRDMDGARAERVLELAGIALNKNTVPGDT
SAFNPGGIRMGTHAMTTRGCDTEDFESIAGYLHRGIAIAAQVKKDLGSGA
KMSEFREAVDNGAGEAEIKALREEVEEFSLAFEPIGFDRADMVYQ*
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mRNA from alignment at tig00004426_pilon:347641..349128-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4446.t1 ID=Gchil4446.t1|Name=Gchil4446.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00004426_pilon:347641..349128- (Gracilaria chilensis NLEC103_M9 male)
ATGTTGCGTTCCACCTTCTTGCGAAACGTTTCGCGTCGCCTTCTGGCTAC
TCCAGCTGTCACTCCCACTGCCGCTGCCCCGTCCACTCTGAATTCGCCTC
TAGCGGAAGTCGATCCAGAGCTGTTCGATATCATCGAGCACGAGAAGGCT
CGTCAGATAAAATCGATTCAGTTGATTCCATCGGAGAACTTCACTTCTCG
TGCCGTACTGGAAGCCGTTGGCTCAGTGATGACCAACAAATACTCTGAGG
GATATCCCGGTGCGCGCTACTACGGAGGAAATGAATTCATTGATATGAGT
GAACGCTTATGCCAGAAGCGAGCTCTCGAGGCGTTCCGCGTCTCTCCTGA
TGAGTGGGGCGTGAACGTCCAAGCACTCTCAGGAAGTCCTTCTAATCTCG
CCGTATACACAGCTCTTCTCAAGCCGCATGACCGCATTCTCAGCCTTGAT
CTACCGCACGGGGGGCATCTGAGTCATGGTTTCATGACCGCCAAGAAGCG
CGTGAGCGCCACCTCTATTTTCTTCGAGTCCATGCCTTACCGACTCAACG
AAAGCAATGGACTGATTGACTATGACAAACTGGAAGAGTCAGCCATACTT
TTCAGACCGAAGATAATCATTGCTGGTGCTAGCGCATACTCCAGACTATA
CGATTACCCTCGCATGCGCGCGATAGCCGATAAGGTTGGTGCATATCTTC
TTGCCGATATCGCACACATTTCCGGTTTGGTTGCAGCTGGTGTTATTCCC
TCGCCGTTTGAATATGCGGACGTAATCACCACCACCACCCACAAGGCCCT
ACGTGGCCCGAGAGGAGCTCTGATTTTCTTCAGGAGGGGTGTTCGTTCCG
TCAATAAGAAAGGTGAGGAGATCATGTACAACCTCGAGAATCCCATTAAC
TCTGCTGTTTTCCCAGGATTACAGGGAGGGCCCCACAACCACACCATTGC
AGCCCTGGCCGTTGCGCTAAAGATGGCTCAAGAACCTGAATTTGTCAATT
ACCAACAGAAGGTGCTCGACAATGCCCAAGTACTTGCCAAGGGACTCATC
GACAGAGGTTACGACCTCGTTTCGGGCGGAACCGACAACCATCTTATGCT
GGCCAATCTGAGGACCAGGGATATGGATGGCGCTCGTGCGGAACGAGTTC
TGGAATTGGCTGGAATCGCATTGAACAAGAACACTGTCCCTGGCGACACA
AGCGCATTCAACCCCGGGGGTATCCGTATGGGCACGCATGCAATGACTAC
TAGAGGATGTGACACTGAGGACTTCGAGAGTATCGCAGGATATCTGCATC
GTGGAATCGCCATCGCAGCTCAGGTGAAGAAGGACCTGGGCTCTGGGGCA
AAGATGTCTGAATTCCGAGAAGCTGTAGACAACGGAGCTGGTGAAGCCGA
AATCAAAGCTTTGAGGGAAGAAGTGGAAGAGTTTTCCTTGGCATTTGAGC
CCATTGGGTTCGACCGGGCCGACATGGTCTATCAGTGA
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Coding sequence (CDS) from alignment at tig00004426_pilon:347641..349128-

>Gchil4446.t1 ID=Gchil4446.t1|Name=Gchil4446.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1488bp|location=Sequence derived from alignment at tig00004426_pilon:347641..349128- (Gracilaria chilensis NLEC103_M9 male)
ATGTTGCGTTCCACCTTCTTGCGAAACGTTTCGCGTCGCCTTCTGGCTAC
TCCAGCTGTCACTCCCACTGCCGCTGCCCCGTCCACTCTGAATTCGCCTC
TAGCGGAAGTCGATCCAGAGCTGTTCGATATCATCGAGCACGAGAAGGCT
CGTCAGATAAAATCGATTCAGTTGATTCCATCGGAGAACTTCACTTCTCG
TGCCGTACTGGAAGCCGTTGGCTCAGTGATGACCAACAAATACTCTGAGG
GATATCCCGGTGCGCGCTACTACGGAGGAAATGAATTCATTGATATGAGT
GAACGCTTATGCCAGAAGCGAGCTCTCGAGGCGTTCCGCGTCTCTCCTGA
TGAGTGGGGCGTGAACGTCCAAGCACTCTCAGGAAGTCCTTCTAATCTCG
CCGTATACACAGCTCTTCTCAAGCCGCATGACCGCATTCTCAGCCTTGAT
CTACCGCACGGGGGGCATCTGAGTCATGGTTTCATGACCGCCAAGAAGCG
CGTGAGCGCCACCTCTATTTTCTTCGAGTCCATGCCTTACCGACTCAACG
AAAGCAATGGACTGATTGACTATGACAAACTGGAAGAGTCAGCCATACTT
TTCAGACCGAAGATAATCATTGCTGGTGCTAGCGCATACTCCAGACTATA
CGATTACCCTCGCATGCGCGCGATAGCCGATAAGGTTGGTGCATATCTTC
TTGCCGATATCGCACACATTTCCGGTTTGGTTGCAGCTGGTGTTATTCCC
TCGCCGTTTGAATATGCGGACGTAATCACCACCACCACCCACAAGGCCCT
ACGTGGCCCGAGAGGAGCTCTGATTTTCTTCAGGAGGGGTGTTCGTTCCG
TCAATAAGAAAGGTGAGGAGATCATGTACAACCTCGAGAATCCCATTAAC
TCTGCTGTTTTCCCAGGATTACAGGGAGGGCCCCACAACCACACCATTGC
AGCCCTGGCCGTTGCGCTAAAGATGGCTCAAGAACCTGAATTTGTCAATT
ACCAACAGAAGGTGCTCGACAATGCCCAAGTACTTGCCAAGGGACTCATC
GACAGAGGTTACGACCTCGTTTCGGGCGGAACCGACAACCATCTTATGCT
GGCCAATCTGAGGACCAGGGATATGGATGGCGCTCGTGCGGAACGAGTTC
TGGAATTGGCTGGAATCGCATTGAACAAGAACACTGTCCCTGGCGACACA
AGCGCATTCAACCCCGGGGGTATCCGTATGGGCACGCATGCAATGACTAC
TAGAGGATGTGACACTGAGGACTTCGAGAGTATCGCAGGATATCTGCATC
GTGGAATCGCCATCGCAGCTCAGGTGAAGAAGGACCTGGGCTCTGGGGCA
AAGATGTCTGAATTCCGAGAAGCTGTAGACAACGGAGCTGGTGAAGCCGA
AATCAAAGCTTTGAGGGAAGAAGTGGAAGAGTTTTCCTTGGCATTTGAGC
CCATTGGGTTCGACCGGGCCGACATGGTCTATCAGTGA
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