Gchil4442.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4442.t2
Unique NameGchil4442.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:340032..341453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709210.1
PFAMsAbi
Max annot lvl2759|Eukaryota
KEGG koko:K07052
Evalue1.1e-133
EggNOG OGsCOG1266@1|root,2QR9S@2759|Eukaryota
DescriptionCAAX protease self-immunity
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4442Gchil4442Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 340032..341453 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4442.t2.stop1Gchil4442.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 340032..340034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4442.t2.CDS1Gchil4442.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 340032..341453 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4442.t2.exon1Gchil4442.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 340032..341453 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4442.t2.start1Gchil4442.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 341451..341453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4442.t2Gchil4442.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 340032..341453 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4442.t2 ID=Gchil4442.t2|Name=Gchil4442.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=474bp
MRARRPRLLGLPIPSRMAFSGCAFVPISHTFQIPNRPYRSSGKISRPLVS
PVRHCFAFRPSQRPLQVRILASADHAAADDASNLPDDSLQPFQPSQSPLQ
SSASSPLQSQSSVPVEEQAEAKSSNRPEWAPEWLPDFFLDLRRRPWLQLA
IMLPLYAFHLFFLSTKGFKFKNPIIPNNKNLFQSIGYESIAGAIVAIAML
LWRRYLMPRRQSQPVLPNVLSVENPPWKVPRDAKRRIGRTTVLLIVAYLI
SGYGAVFSEQVLYLLAGSGIPLTVATTRAWKVLLGHLMWVYMGIGILRRL
KPFFPPKGTWLRWKWRSNWLWWAIGGYYVSALFFNIADVVNQLVLPPSLF
EEETVVSKLINPENKDRVAMAIGSIGPCVSAPVFEEVLYRGFLLPALACF
LPMWAAIPASSVLFAIHHLNPTMILPLSMLGFIWANLYSQSRNLTVTILI
HAMWNSRVFLGSLLGLGTFTDFE*
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spliced messenger RNA

>Gchil4442.t2 ID=Gchil4442.t2|Name=Gchil4442.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00004426_pilon:340032..341453- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCACGGCGACCCCGTCTGCTGGGTTTGCCAATCCCATCCAGGAT
GGCGTTTTCAGGCTGCGCTTTCGTCCCCATTTCCCATACCTTTCAAATAC
CTAACCGCCCGTATCGCTCGTCCGGGAAGATTTCTCGCCCCCTTGTCTCC
CCGGTTCGACATTGCTTTGCGTTCCGACCGTCTCAAAGACCATTACAGGT
TCGCATTCTTGCCTCTGCTGATCATGCTGCTGCCGATGACGCTTCTAATC
TGCCTGATGATTCTCTTCAACCTTTTCAACCTTCTCAAAGCCCGCTGCAG
TCGTCCGCTTCTTCACCGCTGCAATCTCAATCCTCTGTTCCAGTTGAGGA
GCAAGCCGAAGCAAAATCTTCAAATAGACCGGAATGGGCTCCGGAATGGC
TTCCTGACTTTTTTCTCGATTTGCGACGACGTCCCTGGTTACAGCTTGCC
ATAATGCTTCCGCTCTACGCCTTTCATCTATTCTTTCTGTCCACAAAGGG
TTTTAAGTTTAAGAATCCAATCATTCCCAACAACAAGAACCTCTTCCAAA
GCATTGGATACGAATCGATAGCCGGTGCTATTGTTGCCATAGCAATGCTT
CTTTGGAGAAGATACCTTATGCCTCGGCGTCAATCACAACCTGTTCTACC
AAATGTTCTTTCTGTTGAAAACCCTCCGTGGAAGGTTCCGCGCGATGCCA
AGCGTCGCATCGGAAGAACTACAGTGTTGCTTATTGTAGCGTACCTGATT
TCTGGATATGGGGCTGTATTCAGTGAACAGGTGCTTTATCTTCTCGCAGG
GTCCGGCATTCCGCTAACTGTTGCCACCACCCGTGCATGGAAAGTCCTCC
TTGGTCATCTTATGTGGGTGTACATGGGTATAGGAATTTTGCGTCGATTG
AAACCTTTTTTTCCACCGAAAGGGACATGGCTACGATGGAAGTGGCGCAG
CAATTGGTTGTGGTGGGCAATAGGTGGCTACTACGTTAGCGCTCTCTTCT
TTAACATTGCGGATGTCGTCAACCAGCTGGTATTGCCCCCATCTTTATTT
GAAGAGGAAACGGTCGTGAGCAAGTTGATAAATCCGGAGAACAAAGATCG
AGTAGCTATGGCGATTGGGTCCATCGGACCTTGTGTTTCCGCCCCCGTTT
TTGAGGAGGTCCTTTATAGAGGGTTTTTGCTACCGGCGCTAGCGTGCTTT
TTGCCGATGTGGGCGGCAATTCCGGCAAGCTCTGTGCTCTTCGCCATTCA
TCACCTAAATCCTACGATGATCCTTCCTCTTTCGATGCTTGGGTTTATTT
GGGCTAACCTTTACTCACAGTCTAGAAATCTCACGGTGACTATCTTAATT
CATGCGATGTGGAATAGTAGAGTTTTCCTAGGCTCTTTGCTTGGTCTTGG
AACTTTTACCGATTTTGAATAA
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protein sequence of Gchil4442.t2

>Gchil4442.t2 ID=Gchil4442.t2|Name=Gchil4442.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=474bp
MRARRPRLLGLPIPSRMAFSGCAFVPISHTFQIPNRPYRSSGKISRPLVS
PVRHCFAFRPSQRPLQVRILASADHAAADDASNLPDDSLQPFQPSQSPLQ
SSASSPLQSQSSVPVEEQAEAKSSNRPEWAPEWLPDFFLDLRRRPWLQLA
IMLPLYAFHLFFLSTKGFKFKNPIIPNNKNLFQSIGYESIAGAIVAIAML
LWRRYLMPRRQSQPVLPNVLSVENPPWKVPRDAKRRIGRTTVLLIVAYLI
SGYGAVFSEQVLYLLAGSGIPLTVATTRAWKVLLGHLMWVYMGIGILRRL
KPFFPPKGTWLRWKWRSNWLWWAIGGYYVSALFFNIADVVNQLVLPPSLF
EEETVVSKLINPENKDRVAMAIGSIGPCVSAPVFEEVLYRGFLLPALACF
LPMWAAIPASSVLFAIHHLNPTMILPLSMLGFIWANLYSQSRNLTVTILI
HAMWNSRVFLGSLLGLGTFTDFE*
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mRNA from alignment at tig00004426_pilon:340032..341453-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4442.t2 ID=Gchil4442.t2|Name=Gchil4442.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00004426_pilon:340032..341453- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGCACGGCGACCCCGTCTGCTGGGTTTGCCAATCCCATCCAGGAT
GGCGTTTTCAGGCTGCGCTTTCGTCCCCATTTCCCATACCTTTCAAATAC
CTAACCGCCCGTATCGCTCGTCCGGGAAGATTTCTCGCCCCCTTGTCTCC
CCGGTTCGACATTGCTTTGCGTTCCGACCGTCTCAAAGACCATTACAGGT
TCGCATTCTTGCCTCTGCTGATCATGCTGCTGCCGATGACGCTTCTAATC
TGCCTGATGATTCTCTTCAACCTTTTCAACCTTCTCAAAGCCCGCTGCAG
TCGTCCGCTTCTTCACCGCTGCAATCTCAATCCTCTGTTCCAGTTGAGGA
GCAAGCCGAAGCAAAATCTTCAAATAGACCGGAATGGGCTCCGGAATGGC
TTCCTGACTTTTTTCTCGATTTGCGACGACGTCCCTGGTTACAGCTTGCC
ATAATGCTTCCGCTCTACGCCTTTCATCTATTCTTTCTGTCCACAAAGGG
TTTTAAGTTTAAGAATCCAATCATTCCCAACAACAAGAACCTCTTCCAAA
GCATTGGATACGAATCGATAGCCGGTGCTATTGTTGCCATAGCAATGCTT
CTTTGGAGAAGATACCTTATGCCTCGGCGTCAATCACAACCTGTTCTACC
AAATGTTCTTTCTGTTGAAAACCCTCCGTGGAAGGTTCCGCGCGATGCCA
AGCGTCGCATCGGAAGAACTACAGTGTTGCTTATTGTAGCGTACCTGATT
TCTGGATATGGGGCTGTATTCAGTGAACAGGTGCTTTATCTTCTCGCAGG
GTCCGGCATTCCGCTAACTGTTGCCACCACCCGTGCATGGAAAGTCCTCC
TTGGTCATCTTATGTGGGTGTACATGGGTATAGGAATTTTGCGTCGATTG
AAACCTTTTTTTCCACCGAAAGGGACATGGCTACGATGGAAGTGGCGCAG
CAATTGGTTGTGGTGGGCAATAGGTGGCTACTACGTTAGCGCTCTCTTCT
TTAACATTGCGGATGTCGTCAACCAGCTGGTATTGCCCCCATCTTTATTT
GAAGAGGAAACGGTCGTGAGCAAGTTGATAAATCCGGAGAACAAAGATCG
AGTAGCTATGGCGATTGGGTCCATCGGACCTTGTGTTTCCGCCCCCGTTT
TTGAGGAGGTCCTTTATAGAGGGTTTTTGCTACCGGCGCTAGCGTGCTTT
TTGCCGATGTGGGCGGCAATTCCGGCAAGCTCTGTGCTCTTCGCCATTCA
TCACCTAAATCCTACGATGATCCTTCCTCTTTCGATGCTTGGGTTTATTT
GGGCTAACCTTTACTCACAGTCTAGAAATCTCACGGTGACTATCTTAATT
CATGCGATGTGGAATAGTAGAGTTTTCCTAGGCTCTTTGCTTGGTCTTGG
AACTTTTACCGATTTTGAATAA
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Coding sequence (CDS) from alignment at tig00004426_pilon:340032..341453-

>Gchil4442.t2 ID=Gchil4442.t2|Name=Gchil4442.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00004426_pilon:340032..341453- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGCACGGCGACCCCGTCTGCTGGGTTTGCCAATCCCATCCAGGAT
GGCGTTTTCAGGCTGCGCTTTCGTCCCCATTTCCCATACCTTTCAAATAC
CTAACCGCCCGTATCGCTCGTCCGGGAAGATTTCTCGCCCCCTTGTCTCC
CCGGTTCGACATTGCTTTGCGTTCCGACCGTCTCAAAGACCATTACAGGT
TCGCATTCTTGCCTCTGCTGATCATGCTGCTGCCGATGACGCTTCTAATC
TGCCTGATGATTCTCTTCAACCTTTTCAACCTTCTCAAAGCCCGCTGCAG
TCGTCCGCTTCTTCACCGCTGCAATCTCAATCCTCTGTTCCAGTTGAGGA
GCAAGCCGAAGCAAAATCTTCAAATAGACCGGAATGGGCTCCGGAATGGC
TTCCTGACTTTTTTCTCGATTTGCGACGACGTCCCTGGTTACAGCTTGCC
ATAATGCTTCCGCTCTACGCCTTTCATCTATTCTTTCTGTCCACAAAGGG
TTTTAAGTTTAAGAATCCAATCATTCCCAACAACAAGAACCTCTTCCAAA
GCATTGGATACGAATCGATAGCCGGTGCTATTGTTGCCATAGCAATGCTT
CTTTGGAGAAGATACCTTATGCCTCGGCGTCAATCACAACCTGTTCTACC
AAATGTTCTTTCTGTTGAAAACCCTCCGTGGAAGGTTCCGCGCGATGCCA
AGCGTCGCATCGGAAGAACTACAGTGTTGCTTATTGTAGCGTACCTGATT
TCTGGATATGGGGCTGTATTCAGTGAACAGGTGCTTTATCTTCTCGCAGG
GTCCGGCATTCCGCTAACTGTTGCCACCACCCGTGCATGGAAAGTCCTCC
TTGGTCATCTTATGTGGGTGTACATGGGTATAGGAATTTTGCGTCGATTG
AAACCTTTTTTTCCACCGAAAGGGACATGGCTACGATGGAAGTGGCGCAG
CAATTGGTTGTGGTGGGCAATAGGTGGCTACTACGTTAGCGCTCTCTTCT
TTAACATTGCGGATGTCGTCAACCAGCTGGTATTGCCCCCATCTTTATTT
GAAGAGGAAACGGTCGTGAGCAAGTTGATAAATCCGGAGAACAAAGATCG
AGTAGCTATGGCGATTGGGTCCATCGGACCTTGTGTTTCCGCCCCCGTTT
TTGAGGAGGTCCTTTATAGAGGGTTTTTGCTACCGGCGCTAGCGTGCTTT
TTGCCGATGTGGGCGGCAATTCCGGCAAGCTCTGTGCTCTTCGCCATTCA
TCACCTAAATCCTACGATGATCCTTCCTCTTTCGATGCTTGGGTTTATTT
GGGCTAACCTTTACTCACAGTCTAGAAATCTCACGGTGACTATCTTAATT
CATGCGATGTGGAATAGTAGAGTTTTCCTAGGCTCTTTGCTTGGTCTTGG
AACTTTTACCGATTTTGAATAA
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