Gchil4441.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4441.t1
Unique Name	Gchil4441.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	337

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004426_pilon	contig	tig00004426_pilon:336734..337744 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr48253
PFAMs	BACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10442,ko:K20285,ko:K21912
Evalue	1.11e-70
EggNOG OGs	KOG4441@1\|root,KOG4441@2759\|Eukaryota
Description	protein ubiquitination
COG category	KLT
BRITE	ko00000,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4441	Gchil4441	Gracilaria chilensis NLEC103_M9 male	gene	tig00004426_pilon 336734..337744 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4441.t1.start1	Gchil4441.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004426_pilon 336734..336736 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4441.t1.CDS1	Gchil4441.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004426_pilon 336734..337744 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4441.t1.exon1	Gchil4441.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004426_pilon 336734..337744 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4441.t1.stop1	Gchil4441.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004426_pilon 337742..337744 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4441.t1	Gchil4441.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004426_pilon 336734..337744 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004426_pilon:336734..337744+
coding sequence from alignment at tig00004426_pilon:336734..337744+

mRNA sequence

>Gchil4441.t1 ID=Gchil4441.t1|Name=Gchil4441.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=337bp
MLRLCAFLTLFFFASSAFAKAVWQTVKINGRLPSARHEACFVMVKGKAYL
IGGRGVKPVDIFNPATNTWTKGPSPPVELHHMQCVPIGNEVWIPSAWTGG
YPFERNVDKIYIYNTKANSWYTRPGLPPHRRRGSAAAVWANGKIYVIAGN
RGGHGSHATTLGWVDYYDLGAKKWVLNLPNLPDPRDHTGGALVRWNKICI
AGGRNGGVNNFFTATKASTYCFNLNGNGRGQWQNMNAPIPAQRAGSAYGT
NCAGHMMIAGGELNDAFSRVDIFDGWSWTTTASMNQKRHGSGLAVSNCAC
GKIFIASGSGGRGGGPELKTTEVYLPNGDKTPCAFH*

spliced messenger RNA

>Gchil4441.t1 ID=Gchil4441.t1|Name=Gchil4441.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00004426_pilon:336734..337744+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGCCTCTGCGCTTTTCTTACGCTTTTCTTTTTTGCGTCCTCCGC
CTTCGCCAAAGCTGTCTGGCAAACCGTAAAAATCAATGGAAGGCTCCCAA
GTGCCAGACATGAGGCCTGTTTCGTCATGGTCAAAGGCAAAGCATATCTC
ATAGGTGGCCGCGGCGTAAAGCCTGTCGACATTTTCAACCCAGCCACCAA
CACCTGGACCAAGGGCCCTTCTCCGCCTGTGGAGTTGCACCACATGCAAT
GCGTCCCCATTGGCAACGAAGTTTGGATTCCTTCTGCATGGACCGGCGGC
TATCCATTCGAGCGAAACGTTGACAAAATATACATTTACAACACAAAAGC
TAACTCATGGTACACTAGACCGGGTTTGCCTCCACACCGTCGCCGTGGCA
GCGCCGCCGCCGTCTGGGCCAACGGTAAAATCTATGTCATTGCCGGCAAT
CGAGGTGGCCATGGAAGCCACGCCACTACGCTTGGGTGGGTGGATTATTA
CGACCTTGGTGCCAAAAAGTGGGTGCTCAACCTCCCCAATCTGCCGGATC
CCCGCGATCATACTGGCGGCGCCCTCGTGAGGTGGAACAAAATTTGCATA
GCCGGTGGAAGAAACGGAGGCGTCAACAACTTCTTCACCGCCACGAAAGC
CTCTACCTATTGTTTCAACCTCAACGGCAATGGGCGCGGTCAGTGGCAAA
ATATGAATGCACCCATCCCGGCACAGCGCGCTGGCTCCGCATACGGCACC
AATTGTGCTGGTCACATGATGATTGCCGGCGGTGAACTCAACGACGCCTT
TTCGCGCGTGGACATTTTTGATGGCTGGTCGTGGACAACTACGGCGAGCA
TGAACCAAAAGAGACATGGATCGGGACTGGCGGTGTCCAACTGCGCGTGT
GGAAAGATTTTCATCGCGTCTGGAAGTGGCGGTCGCGGGGGAGGTCCGGA
ACTGAAGACCACTGAAGTTTATCTTCCGAACGGCGACAAGACTCCATGTG
CGTTTCACTAA

protein sequence of Gchil4441.t1

>Gchil4441.t1 ID=Gchil4441.t1|Name=Gchil4441.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=337bp
MLRLCAFLTLFFFASSAFAKAVWQTVKINGRLPSARHEACFVMVKGKAYL
IGGRGVKPVDIFNPATNTWTKGPSPPVELHHMQCVPIGNEVWIPSAWTGG
YPFERNVDKIYIYNTKANSWYTRPGLPPHRRRGSAAAVWANGKIYVIAGN
RGGHGSHATTLGWVDYYDLGAKKWVLNLPNLPDPRDHTGGALVRWNKICI
AGGRNGGVNNFFTATKASTYCFNLNGNGRGQWQNMNAPIPAQRAGSAYGT
NCAGHMMIAGGELNDAFSRVDIFDGWSWTTTASMNQKRHGSGLAVSNCAC
GKIFIASGSGGRGGGPELKTTEVYLPNGDKTPCAFH*

mRNA from alignment at tig00004426_pilon:336734..337744+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4441.t1 ID=Gchil4441.t1|Name=Gchil4441.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00004426_pilon:336734..337744+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCGCCTCTGCGCTTTTCTTACGCTTTTCTTTTTTGCGTCCTCCGC
CTTCGCCAAAGCTGTCTGGCAAACCGTAAAAATCAATGGAAGGCTCCCAA
GTGCCAGACATGAGGCCTGTTTCGTCATGGTCAAAGGCAAAGCATATCTC
ATAGGTGGCCGCGGCGTAAAGCCTGTCGACATTTTCAACCCAGCCACCAA
CACCTGGACCAAGGGCCCTTCTCCGCCTGTGGAGTTGCACCACATGCAAT
GCGTCCCCATTGGCAACGAAGTTTGGATTCCTTCTGCATGGACCGGCGGC
TATCCATTCGAGCGAAACGTTGACAAAATATACATTTACAACACAAAAGC
TAACTCATGGTACACTAGACCGGGTTTGCCTCCACACCGTCGCCGTGGCA
GCGCCGCCGCCGTCTGGGCCAACGGTAAAATCTATGTCATTGCCGGCAAT
CGAGGTGGCCATGGAAGCCACGCCACTACGCTTGGGTGGGTGGATTATTA
CGACCTTGGTGCCAAAAAGTGGGTGCTCAACCTCCCCAATCTGCCGGATC
CCCGCGATCATACTGGCGGCGCCCTCGTGAGGTGGAACAAAATTTGCATA
GCCGGTGGAAGAAACGGAGGCGTCAACAACTTCTTCACCGCCACGAAAGC
CTCTACCTATTGTTTCAACCTCAACGGCAATGGGCGCGGTCAGTGGCAAA
ATATGAATGCACCCATCCCGGCACAGCGCGCTGGCTCCGCATACGGCACC
AATTGTGCTGGTCACATGATGATTGCCGGCGGTGAACTCAACGACGCCTT
TTCGCGCGTGGACATTTTTGATGGCTGGTCGTGGACAACTACGGCGAGCA
TGAACCAAAAGAGACATGGATCGGGACTGGCGGTGTCCAACTGCGCGTGT
GGAAAGATTTTCATCGCGTCTGGAAGTGGCGGTCGCGGGGGAGGTCCGGA
ACTGAAGACCACTGAAGTTTATCTTCCGAACGGCGACAAGACTCCATGTG
CGTTTCACTAA

Coding sequence (CDS) from alignment at tig00004426_pilon:336734..337744+

>Gchil4441.t1 ID=Gchil4441.t1|Name=Gchil4441.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1011bp|location=Sequence derived from alignment at tig00004426_pilon:336734..337744+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCGCCTCTGCGCTTTTCTTACGCTTTTCTTTTTTGCGTCCTCCGC
CTTCGCCAAAGCTGTCTGGCAAACCGTAAAAATCAATGGAAGGCTCCCAA
GTGCCAGACATGAGGCCTGTTTCGTCATGGTCAAAGGCAAAGCATATCTC
ATAGGTGGCCGCGGCGTAAAGCCTGTCGACATTTTCAACCCAGCCACCAA
CACCTGGACCAAGGGCCCTTCTCCGCCTGTGGAGTTGCACCACATGCAAT
GCGTCCCCATTGGCAACGAAGTTTGGATTCCTTCTGCATGGACCGGCGGC
TATCCATTCGAGCGAAACGTTGACAAAATATACATTTACAACACAAAAGC
TAACTCATGGTACACTAGACCGGGTTTGCCTCCACACCGTCGCCGTGGCA
GCGCCGCCGCCGTCTGGGCCAACGGTAAAATCTATGTCATTGCCGGCAAT
CGAGGTGGCCATGGAAGCCACGCCACTACGCTTGGGTGGGTGGATTATTA
CGACCTTGGTGCCAAAAAGTGGGTGCTCAACCTCCCCAATCTGCCGGATC
CCCGCGATCATACTGGCGGCGCCCTCGTGAGGTGGAACAAAATTTGCATA
GCCGGTGGAAGAAACGGAGGCGTCAACAACTTCTTCACCGCCACGAAAGC
CTCTACCTATTGTTTCAACCTCAACGGCAATGGGCGCGGTCAGTGGCAAA
ATATGAATGCACCCATCCCGGCACAGCGCGCTGGCTCCGCATACGGCACC
AATTGTGCTGGTCACATGATGATTGCCGGCGGTGAACTCAACGACGCCTT
TTCGCGCGTGGACATTTTTGATGGCTGGTCGTGGACAACTACGGCGAGCA
TGAACCAAAAGAGACATGGATCGGGACTGGCGGTGTCCAACTGCGCGTGT
GGAAAGATTTTCATCGCGTCTGGAAGTGGCGGTCGCGGGGGAGGTCCGGA
ACTGAAGACCACTGAAGTTTATCTTCCGAACGGCGACAAGACTCCATGTG
CGTTTCACTAA