Gchil4438.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4438.t1
Unique Name	Gchil4438.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	546

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004426_pilon	contig	tig00004426_pilon:330847..332484 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr48253
PFAMs	BACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10442,ko:K20285,ko:K21912
Evalue	1.66e-63
EggNOG OGs	KOG4441@1\|root,KOG4441@2759\|Eukaryota
Description	protein ubiquitination
COG category	KLT
BRITE	ko00000,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4438	Gchil4438	Gracilaria chilensis NLEC103_M9 male	gene	tig00004426_pilon 330847..332484 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4438.t1.start1	Gchil4438.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004426_pilon 330847..330849 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4438.t1.CDS1	Gchil4438.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004426_pilon 330847..332484 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4438.t1.exon1	Gchil4438.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004426_pilon 330847..332484 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4438.t1.stop1	Gchil4438.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004426_pilon 332482..332484 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4438.t1	Gchil4438.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004426_pilon 330847..332484 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004426_pilon:330847..332484+
coding sequence from alignment at tig00004426_pilon:330847..332484+

mRNA sequence

>Gchil4438.t1 ID=Gchil4438.t1|Name=Gchil4438.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=546bp
MKTYFLVLCAALLSVALGNDGNDFIKINVGGTGLEDIGFLQDESYFYDTS
TGDVQSYSDPGFVAPDEIWGEVYRTHRFAEGGSLTYRFPVPDGQFKVGLM
FMEQFDGAARAGGRIMDLFINGEALDKGIDVWSSAGGKLYAPYFLQKLDI
ASVDGYITITLDPVVENPMLSGVVIEGEGASSVLWNTVNGVTPTPMPLGS
AAPPTPVAAATSGIDSPASFDVLPSMSSGVWSNVKYNSGNPTPRHEACAV
FAGGLLYSIGGRGKKDISVYNPVTKTWSSKSGPPVEINHMQCVYYDKRIW
IGGSWYGVFPMEKEHEVMWVYHIASDSWSQKKGLAVGRRRGGGAFVEHEG
KMYMSHGAIGGHGAHAVSTGLFDVYDPATDAWRALKPAPNARDHTTGAMV
NGKLCVGGGRDGGQGDFWSANVGPIDCYNFGTGMWEVKASLPVARGGTMV
GTTCSGLLMIAGGEGKTAENKNGQAFDRVDFFREETNSFEGVSYMTSARH
GSGLGISSCECGHIYVPSGSAGLGGGPEVSTTDVWTEDGVVRECV*

spliced messenger RNA

>Gchil4438.t1 ID=Gchil4438.t1|Name=Gchil4438.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00004426_pilon:330847..332484+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACGTATTTTTTGGTGCTATGTGCAGCTCTACTCTCCGTTGCCCT
GGGCAATGATGGCAATGACTTCATCAAAATAAACGTTGGAGGCACAGGTT
TAGAGGACATTGGCTTCCTGCAAGATGAATCGTATTTCTACGACACGAGC
ACTGGAGATGTTCAATCGTACAGTGACCCTGGTTTTGTTGCTCCAGACGA
GATTTGGGGCGAGGTTTATCGCACTCACCGCTTTGCGGAGGGAGGTTCTT
TGACTTACCGTTTCCCTGTACCGGACGGGCAGTTCAAGGTTGGGCTGATG
TTCATGGAGCAGTTCGATGGGGCCGCTAGAGCGGGCGGACGTATCATGGA
CCTTTTCATCAACGGCGAAGCGCTCGACAAGGGAATCGATGTGTGGTCGT
CCGCGGGAGGAAAGCTGTATGCACCGTACTTTCTTCAGAAGCTTGACATT
GCTTCGGTTGACGGATACATCACCATAACGCTGGACCCAGTGGTTGAGAA
CCCAATGCTGAGCGGTGTTGTGATTGAAGGCGAAGGGGCTTCAAGCGTTT
TGTGGAACACGGTGAATGGAGTGACACCGACGCCGATGCCACTGGGTTCA
GCAGCGCCCCCCACGCCAGTTGCTGCGGCGACATCCGGTATCGACTCGCC
GGCGTCGTTTGACGTTCTTCCGTCGATGAGCAGCGGAGTGTGGTCAAATG
TGAAGTACAACTCTGGCAACCCGACACCGAGACACGAGGCTTGCGCGGTG
TTTGCCGGCGGGTTGCTGTACAGCATTGGCGGACGTGGAAAGAAGGACAT
TAGTGTGTACAACCCTGTGACCAAGACGTGGAGCTCCAAGAGCGGACCGC
CGGTGGAAATCAACCATATGCAATGCGTGTACTACGACAAGCGAATCTGG
ATTGGAGGCAGTTGGTACGGCGTGTTCCCCATGGAGAAGGAACATGAAGT
GATGTGGGTGTACCACATTGCGAGCGACTCATGGTCGCAAAAGAAGGGTC
TGGCTGTGGGACGACGCCGCGGCGGAGGAGCTTTTGTTGAGCACGAAGGA
AAGATGTACATGTCGCACGGTGCAATCGGCGGGCATGGAGCACATGCGGT
TTCCACAGGTCTGTTCGATGTGTATGACCCGGCGACGGACGCATGGCGCG
CTCTGAAACCGGCTCCCAACGCGCGGGACCACACGACGGGCGCCATGGTG
AACGGGAAGCTGTGCGTGGGCGGAGGACGAGACGGAGGACAGGGTGACTT
TTGGAGCGCGAACGTGGGGCCTATTGATTGTTACAACTTTGGGACGGGGA
TGTGGGAGGTGAAGGCGTCGCTTCCGGTGGCGAGGGGCGGTACGATGGTG
GGCACGACGTGCAGCGGATTGCTGATGATTGCTGGGGGTGAGGGAAAGAC
GGCGGAGAACAAGAATGGGCAGGCGTTTGACAGGGTGGACTTTTTCAGAG
AAGAGACAAACTCGTTTGAAGGGGTGAGTTACATGACGAGCGCGCGTCAC
GGATCGGGACTGGGCATCAGCTCGTGTGAGTGCGGGCATATCTACGTGCC
TTCTGGTTCGGCGGGTCTGGGCGGCGGGCCGGAGGTGAGCACGACGGACG
TGTGGACGGAGGACGGGGTGGTGAGAGAGTGCGTGTAA

protein sequence of Gchil4438.t1

>Gchil4438.t1 ID=Gchil4438.t1|Name=Gchil4438.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=546bp
MKTYFLVLCAALLSVALGNDGNDFIKINVGGTGLEDIGFLQDESYFYDTS
TGDVQSYSDPGFVAPDEIWGEVYRTHRFAEGGSLTYRFPVPDGQFKVGLM
FMEQFDGAARAGGRIMDLFINGEALDKGIDVWSSAGGKLYAPYFLQKLDI
ASVDGYITITLDPVVENPMLSGVVIEGEGASSVLWNTVNGVTPTPMPLGS
AAPPTPVAAATSGIDSPASFDVLPSMSSGVWSNVKYNSGNPTPRHEACAV
FAGGLLYSIGGRGKKDISVYNPVTKTWSSKSGPPVEINHMQCVYYDKRIW
IGGSWYGVFPMEKEHEVMWVYHIASDSWSQKKGLAVGRRRGGGAFVEHEG
KMYMSHGAIGGHGAHAVSTGLFDVYDPATDAWRALKPAPNARDHTTGAMV
NGKLCVGGGRDGGQGDFWSANVGPIDCYNFGTGMWEVKASLPVARGGTMV
GTTCSGLLMIAGGEGKTAENKNGQAFDRVDFFREETNSFEGVSYMTSARH
GSGLGISSCECGHIYVPSGSAGLGGGPEVSTTDVWTEDGVVRECV*

mRNA from alignment at tig00004426_pilon:330847..332484+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4438.t1 ID=Gchil4438.t1|Name=Gchil4438.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00004426_pilon:330847..332484+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGACGTATTTTTTGGTGCTATGTGCAGCTCTACTCTCCGTTGCCCT
GGGCAATGATGGCAATGACTTCATCAAAATAAACGTTGGAGGCACAGGTT
TAGAGGACATTGGCTTCCTGCAAGATGAATCGTATTTCTACGACACGAGC
ACTGGAGATGTTCAATCGTACAGTGACCCTGGTTTTGTTGCTCCAGACGA
GATTTGGGGCGAGGTTTATCGCACTCACCGCTTTGCGGAGGGAGGTTCTT
TGACTTACCGTTTCCCTGTACCGGACGGGCAGTTCAAGGTTGGGCTGATG
TTCATGGAGCAGTTCGATGGGGCCGCTAGAGCGGGCGGACGTATCATGGA
CCTTTTCATCAACGGCGAAGCGCTCGACAAGGGAATCGATGTGTGGTCGT
CCGCGGGAGGAAAGCTGTATGCACCGTACTTTCTTCAGAAGCTTGACATT
GCTTCGGTTGACGGATACATCACCATAACGCTGGACCCAGTGGTTGAGAA
CCCAATGCTGAGCGGTGTTGTGATTGAAGGCGAAGGGGCTTCAAGCGTTT
TGTGGAACACGGTGAATGGAGTGACACCGACGCCGATGCCACTGGGTTCA
GCAGCGCCCCCCACGCCAGTTGCTGCGGCGACATCCGGTATCGACTCGCC
GGCGTCGTTTGACGTTCTTCCGTCGATGAGCAGCGGAGTGTGGTCAAATG
TGAAGTACAACTCTGGCAACCCGACACCGAGACACGAGGCTTGCGCGGTG
TTTGCCGGCGGGTTGCTGTACAGCATTGGCGGACGTGGAAAGAAGGACAT
TAGTGTGTACAACCCTGTGACCAAGACGTGGAGCTCCAAGAGCGGACCGC
CGGTGGAAATCAACCATATGCAATGCGTGTACTACGACAAGCGAATCTGG
ATTGGAGGCAGTTGGTACGGCGTGTTCCCCATGGAGAAGGAACATGAAGT
GATGTGGGTGTACCACATTGCGAGCGACTCATGGTCGCAAAAGAAGGGTC
TGGCTGTGGGACGACGCCGCGGCGGAGGAGCTTTTGTTGAGCACGAAGGA
AAGATGTACATGTCGCACGGTGCAATCGGCGGGCATGGAGCACATGCGGT
TTCCACAGGTCTGTTCGATGTGTATGACCCGGCGACGGACGCATGGCGCG
CTCTGAAACCGGCTCCCAACGCGCGGGACCACACGACGGGCGCCATGGTG
AACGGGAAGCTGTGCGTGGGCGGAGGACGAGACGGAGGACAGGGTGACTT
TTGGAGCGCGAACGTGGGGCCTATTGATTGTTACAACTTTGGGACGGGGA
TGTGGGAGGTGAAGGCGTCGCTTCCGGTGGCGAGGGGCGGTACGATGGTG
GGCACGACGTGCAGCGGATTGCTGATGATTGCTGGGGGTGAGGGAAAGAC
GGCGGAGAACAAGAATGGGCAGGCGTTTGACAGGGTGGACTTTTTCAGAG
AAGAGACAAACTCGTTTGAAGGGGTGAGTTACATGACGAGCGCGCGTCAC
GGATCGGGACTGGGCATCAGCTCGTGTGAGTGCGGGCATATCTACGTGCC
TTCTGGTTCGGCGGGTCTGGGCGGCGGGCCGGAGGTGAGCACGACGGACG
TGTGGACGGAGGACGGGGTGGTGAGAGAGTGCGTGTAA

Coding sequence (CDS) from alignment at tig00004426_pilon:330847..332484+

>Gchil4438.t1 ID=Gchil4438.t1|Name=Gchil4438.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1638bp|location=Sequence derived from alignment at tig00004426_pilon:330847..332484+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGACGTATTTTTTGGTGCTATGTGCAGCTCTACTCTCCGTTGCCCT
GGGCAATGATGGCAATGACTTCATCAAAATAAACGTTGGAGGCACAGGTT
TAGAGGACATTGGCTTCCTGCAAGATGAATCGTATTTCTACGACACGAGC
ACTGGAGATGTTCAATCGTACAGTGACCCTGGTTTTGTTGCTCCAGACGA
GATTTGGGGCGAGGTTTATCGCACTCACCGCTTTGCGGAGGGAGGTTCTT
TGACTTACCGTTTCCCTGTACCGGACGGGCAGTTCAAGGTTGGGCTGATG
TTCATGGAGCAGTTCGATGGGGCCGCTAGAGCGGGCGGACGTATCATGGA
CCTTTTCATCAACGGCGAAGCGCTCGACAAGGGAATCGATGTGTGGTCGT
CCGCGGGAGGAAAGCTGTATGCACCGTACTTTCTTCAGAAGCTTGACATT
GCTTCGGTTGACGGATACATCACCATAACGCTGGACCCAGTGGTTGAGAA
CCCAATGCTGAGCGGTGTTGTGATTGAAGGCGAAGGGGCTTCAAGCGTTT
TGTGGAACACGGTGAATGGAGTGACACCGACGCCGATGCCACTGGGTTCA
GCAGCGCCCCCCACGCCAGTTGCTGCGGCGACATCCGGTATCGACTCGCC
GGCGTCGTTTGACGTTCTTCCGTCGATGAGCAGCGGAGTGTGGTCAAATG
TGAAGTACAACTCTGGCAACCCGACACCGAGACACGAGGCTTGCGCGGTG
TTTGCCGGCGGGTTGCTGTACAGCATTGGCGGACGTGGAAAGAAGGACAT
TAGTGTGTACAACCCTGTGACCAAGACGTGGAGCTCCAAGAGCGGACCGC
CGGTGGAAATCAACCATATGCAATGCGTGTACTACGACAAGCGAATCTGG
ATTGGAGGCAGTTGGTACGGCGTGTTCCCCATGGAGAAGGAACATGAAGT
GATGTGGGTGTACCACATTGCGAGCGACTCATGGTCGCAAAAGAAGGGTC
TGGCTGTGGGACGACGCCGCGGCGGAGGAGCTTTTGTTGAGCACGAAGGA
AAGATGTACATGTCGCACGGTGCAATCGGCGGGCATGGAGCACATGCGGT
TTCCACAGGTCTGTTCGATGTGTATGACCCGGCGACGGACGCATGGCGCG
CTCTGAAACCGGCTCCCAACGCGCGGGACCACACGACGGGCGCCATGGTG
AACGGGAAGCTGTGCGTGGGCGGAGGACGAGACGGAGGACAGGGTGACTT
TTGGAGCGCGAACGTGGGGCCTATTGATTGTTACAACTTTGGGACGGGGA
TGTGGGAGGTGAAGGCGTCGCTTCCGGTGGCGAGGGGCGGTACGATGGTG
GGCACGACGTGCAGCGGATTGCTGATGATTGCTGGGGGTGAGGGAAAGAC
GGCGGAGAACAAGAATGGGCAGGCGTTTGACAGGGTGGACTTTTTCAGAG
AAGAGACAAACTCGTTTGAAGGGGTGAGTTACATGACGAGCGCGCGTCAC
GGATCGGGACTGGGCATCAGCTCGTGTGAGTGCGGGCATATCTACGTGCC
TTCTGGTTCGGCGGGTCTGGGCGGCGGGCCGGAGGTGAGCACGACGGACG
TGTGGACGGAGGACGGGGTGGTGAGAGAGTGCGTGTAA