Gchil443.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil443.t1
Unique NameGchil443.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length399
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000060_piloncontigtig00000060_pilon:176523..177810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29850.GGTG_10887T0
Max annot lvl4751|Fungi
Evalue3.03e-42
EggNOG OGs292CQ@1|root,2R994@2759|Eukaryota,38M38@33154|Opisthokonta,3PNZM@4751|Fungi,3R882@4890|Ascomycota,21EKA@147550|Sordariomycetes,41QDK@639021|Magnaporthales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil443Gchil443Gracilaria chilensis NLEC103_M9 malegenetig00000060_pilon 176523..177810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil443.t1Gchil443.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000060_pilon 176523..177810 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil443.t1.start1Gchil443.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000060_pilon 176523..176525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil443.t1.CDS1Gchil443.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000060_pilon 176523..176594 +
Gchil443.t1.CDS2Gchil443.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000060_pilon 176686..177810 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil443.t1.exon1Gchil443.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000060_pilon 176523..176594 +
Gchil443.t1.exon2Gchil443.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000060_pilon 176686..177810 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil443.t1.intron1Gchil443.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000060_pilon 176595..176685 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil443.t1.stop1Gchil443.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000060_pilon 177808..177810 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil443.t1 ID=Gchil443.t1|Name=Gchil443.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=399bp
MLGIKTLLIHVGLSSHFQASAHLFPISDQGIIQDVGSLALSPTYKQISPE
VLRCKSSDAIINGICEIALGKINSELEAAGIGIKKDGILFTYDDPTHEGI
PTGHSCSVTAKVRHKHASAHFSSSSTLKLTGTSLSDALALRLNIPVRVNA
KVDVRQRFGVRFFGKCKRYARDTFSLKAGATTKADVMLGLSINPSLRKLS
NGNFELTLMPAIAALFELDDINLKFRVSKVSPITPIWTFIVGFKSTLLKS
ISGLFKGDSLKDVFKELKQSLIYDIGAPIVLGIGALPRPLEALIFDALGN
IAERKIEREANGFSENLEDKLNEELRRALKVGADGKRVIIFKGNFLNLLG
ESANINDLFVEPRRPTTAGRLPFRGGRGSRYGYIHGHVNARESYRDEP*
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spliced messenger RNA

>Gchil443.t1 ID=Gchil443.t1|Name=Gchil443.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000060_pilon:176523..177810+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGGTATAAAAACGCTTCTCATTCATGTTGGATTAAGCTCTCACTT
TCAAGCTTCTGCCCATCTGTTCCCAATTTCTGATCAGGGCATCATTCAAG
ATGTTGGATCTCTTGCCCTCTCGCCGACCTACAAACAAATATCTCCAGAG
GTACTTCGCTGCAAATCATCCGACGCTATCATTAATGGAATCTGTGAAAT
CGCTCTCGGCAAGATAAATTCCGAGTTGGAAGCAGCTGGAATAGGTATCA
AGAAGGACGGTATTCTGTTTACATACGATGATCCAACTCATGAAGGTATC
CCAACCGGACACAGTTGTTCAGTAACTGCTAAAGTGAGACATAAGCATGC
ATCCGCACATTTTTCAAGCTCAAGCACCTTGAAACTCACCGGAACATCAC
TTTCGGATGCCCTTGCTCTTCGCCTGAACATTCCTGTTCGGGTAAATGCC
AAAGTTGATGTCAGACAACGGTTTGGAGTCCGTTTCTTTGGAAAATGCAA
ACGATACGCTAGAGACACCTTTTCTCTCAAAGCTGGGGCAACCACGAAAG
CAGATGTGATGCTCGGCTTGTCTATTAACCCTTCACTCAGAAAGTTGTCG
AACGGAAACTTCGAATTGACGTTAATGCCCGCAATTGCAGCTCTCTTTGA
ACTCGACGATATTAATCTTAAATTCCGTGTAAGCAAAGTCAGTCCAATTA
CCCCTATTTGGACTTTTATCGTTGGCTTCAAGTCTACATTACTGAAGTCT
ATCTCGGGCTTGTTCAAGGGTGACAGCCTGAAAGACGTTTTCAAGGAACT
GAAGCAGAGTTTGATATACGACATTGGAGCACCTATTGTACTCGGTATCG
GAGCGCTTCCCCGTCCTCTCGAAGCACTTATATTCGATGCGCTCGGAAAT
ATTGCGGAACGGAAGATAGAGCGAGAGGCAAATGGGTTCAGCGAAAATTT
GGAAGACAAACTAAACGAAGAGCTTCGTCGTGCTCTAAAAGTTGGAGCTG
ATGGAAAACGTGTTATAATCTTCAAGGGAAATTTCTTGAACTTGTTGGGA
GAATCGGCAAACATCAACGACTTGTTTGTTGAGCCGCGGCGACCCACTAC
TGCTGGCCGTCTACCTTTTCGAGGAGGGAGAGGTTCAAGATATGGATATA
TCCACGGACACGTAAACGCCCGGGAGAGTTACCGCGATGAACCGTAG
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protein sequence of Gchil443.t1

>Gchil443.t1 ID=Gchil443.t1|Name=Gchil443.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=399bp
MLGIKTLLIHVGLSSHFQASAHLFPISDQGIIQDVGSLALSPTYKQISPE
VLRCKSSDAIINGICEIALGKINSELEAAGIGIKKDGILFTYDDPTHEGI
PTGHSCSVTAKVRHKHASAHFSSSSTLKLTGTSLSDALALRLNIPVRVNA
KVDVRQRFGVRFFGKCKRYARDTFSLKAGATTKADVMLGLSINPSLRKLS
NGNFELTLMPAIAALFELDDINLKFRVSKVSPITPIWTFIVGFKSTLLKS
ISGLFKGDSLKDVFKELKQSLIYDIGAPIVLGIGALPRPLEALIFDALGN
IAERKIEREANGFSENLEDKLNEELRRALKVGADGKRVIIFKGNFLNLLG
ESANINDLFVEPRRPTTAGRLPFRGGRGSRYGYIHGHVNARESYRDEP*
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mRNA from alignment at tig00000060_pilon:176523..177810+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil443.t1 ID=Gchil443.t1|Name=Gchil443.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1288bp|location=Sequence derived from alignment at tig00000060_pilon:176523..177810+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGGGTATAAAAACGCTTCTCATTCATGTTGGATTAAGCTCTCACTT
TCAAGCTTCTGCCCATCTGTTCGTAAGAAAGACTCGCCATGGGTTTGGGT
AATCTCACGTTTTCTCTCTCTCTTGCTACAGTTTATCTTCTAACAACTGC
CGTTCTTTCCAAGCCAATTTCTGATCAGGGCATCATTCAAGATGTTGGAT
CTCTTGCCCTCTCGCCGACCTACAAACAAATATCTCCAGAGGTACTTCGC
TGCAAATCATCCGACGCTATCATTAATGGAATCTGTGAAATCGCTCTCGG
CAAGATAAATTCCGAGTTGGAAGCAGCTGGAATAGGTATCAAGAAGGACG
GTATTCTGTTTACATACGATGATCCAACTCATGAAGGTATCCCAACCGGA
CACAGTTGTTCAGTAACTGCTAAAGTGAGACATAAGCATGCATCCGCACA
TTTTTCAAGCTCAAGCACCTTGAAACTCACCGGAACATCACTTTCGGATG
CCCTTGCTCTTCGCCTGAACATTCCTGTTCGGGTAAATGCCAAAGTTGAT
GTCAGACAACGGTTTGGAGTCCGTTTCTTTGGAAAATGCAAACGATACGC
TAGAGACACCTTTTCTCTCAAAGCTGGGGCAACCACGAAAGCAGATGTGA
TGCTCGGCTTGTCTATTAACCCTTCACTCAGAAAGTTGTCGAACGGAAAC
TTCGAATTGACGTTAATGCCCGCAATTGCAGCTCTCTTTGAACTCGACGA
TATTAATCTTAAATTCCGTGTAAGCAAAGTCAGTCCAATTACCCCTATTT
GGACTTTTATCGTTGGCTTCAAGTCTACATTACTGAAGTCTATCTCGGGC
TTGTTCAAGGGTGACAGCCTGAAAGACGTTTTCAAGGAACTGAAGCAGAG
TTTGATATACGACATTGGAGCACCTATTGTACTCGGTATCGGAGCGCTTC
CCCGTCCTCTCGAAGCACTTATATTCGATGCGCTCGGAAATATTGCGGAA
CGGAAGATAGAGCGAGAGGCAAATGGGTTCAGCGAAAATTTGGAAGACAA
ACTAAACGAAGAGCTTCGTCGTGCTCTAAAAGTTGGAGCTGATGGAAAAC
GTGTTATAATCTTCAAGGGAAATTTCTTGAACTTGTTGGGAGAATCGGCA
AACATCAACGACTTGTTTGTTGAGCCGCGGCGACCCACTACTGCTGGCCG
TCTACCTTTTCGAGGAGGGAGAGGTTCAAGATATGGATATATCCACGGAC
ACGTAAACGCCCGGGAGAGTTACCGCGATGAACCGTAG
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Coding sequence (CDS) from alignment at tig00000060_pilon:176523..177810+

>Gchil443.t1 ID=Gchil443.t1|Name=Gchil443.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1197bp|location=Sequence derived from alignment at tig00000060_pilon:176523..177810+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGGGTATAAAAACGCTTCTCATTCATGTTGGATTAAGCTCTCACTT
TCAAGCTTCTGCCCATCTGTTCCCAATTTCTGATCAGGGCATCATTCAAG
ATGTTGGATCTCTTGCCCTCTCGCCGACCTACAAACAAATATCTCCAGAG
GTACTTCGCTGCAAATCATCCGACGCTATCATTAATGGAATCTGTGAAAT
CGCTCTCGGCAAGATAAATTCCGAGTTGGAAGCAGCTGGAATAGGTATCA
AGAAGGACGGTATTCTGTTTACATACGATGATCCAACTCATGAAGGTATC
CCAACCGGACACAGTTGTTCAGTAACTGCTAAAGTGAGACATAAGCATGC
ATCCGCACATTTTTCAAGCTCAAGCACCTTGAAACTCACCGGAACATCAC
TTTCGGATGCCCTTGCTCTTCGCCTGAACATTCCTGTTCGGGTAAATGCC
AAAGTTGATGTCAGACAACGGTTTGGAGTCCGTTTCTTTGGAAAATGCAA
ACGATACGCTAGAGACACCTTTTCTCTCAAAGCTGGGGCAACCACGAAAG
CAGATGTGATGCTCGGCTTGTCTATTAACCCTTCACTCAGAAAGTTGTCG
AACGGAAACTTCGAATTGACGTTAATGCCCGCAATTGCAGCTCTCTTTGA
ACTCGACGATATTAATCTTAAATTCCGTGTAAGCAAAGTCAGTCCAATTA
CCCCTATTTGGACTTTTATCGTTGGCTTCAAGTCTACATTACTGAAGTCT
ATCTCGGGCTTGTTCAAGGGTGACAGCCTGAAAGACGTTTTCAAGGAACT
GAAGCAGAGTTTGATATACGACATTGGAGCACCTATTGTACTCGGTATCG
GAGCGCTTCCCCGTCCTCTCGAAGCACTTATATTCGATGCGCTCGGAAAT
ATTGCGGAACGGAAGATAGAGCGAGAGGCAAATGGGTTCAGCGAAAATTT
GGAAGACAAACTAAACGAAGAGCTTCGTCGTGCTCTAAAAGTTGGAGCTG
ATGGAAAACGTGTTATAATCTTCAAGGGAAATTTCTTGAACTTGTTGGGA
GAATCGGCAAACATCAACGACTTGTTTGTTGAGCCGCGGCGACCCACTAC
TGCTGGCCGTCTACCTTTTCGAGGAGGGAGAGGTTCAAGATATGGATATA
TCCACGGACACGTAAACGCCCGGGAGAGTTACCGCGATGAACCGTAG
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