Gchil4429.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4429.t1
Unique NameGchil4429.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:266855..267934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog984962.XP_009542348.1
Preferred nameRFC2
PFAMsAAA,Rep_fac_C
Max annot lvl4751|Fungi
KEGG koko:K10755
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
GOsGO:0000075,GO:0000076,GO:0000166,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022616,GO:0030894,GO:0031389,GO:0031390,GO:0031391,GO:0031570,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033260,GO:0033314,GO:0033554,GO:0034641,GO:0034644,GO:0034645,GO:0036094,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043599,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044774,GO:0044786,GO:0044818,GO:0045786,GO:0045930,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051716,GO:0051726,GO:0061860,GO:0065007,GO:0070013,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0090304,GO:0090618,GO:0097159,GO:0098813,GO:0104004,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902296,GO:1902319,GO:1902494,GO:1902749,GO:1902750,GO:1902969,GO:1902983,GO:1903047,GO:1903460,GO:1904949
Evalue1.17e-103
EggNOG OGsCOG0470@1|root,KOG0989@2759|Eukaryota,38B74@33154|Opisthokonta,3NUEK@4751|Fungi,3UY38@5204|Basidiomycota,228DR@155619|Agaricomycetes,3H1H5@355688|Agaricomycetes incertae sedis
DescriptionP-loop containing nucleoside triphosphate hydrolase protein
COG categoryL
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4429Gchil4429Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 266855..267934 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4429.t1.stop1Gchil4429.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 266855..266857 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4429.t1.CDS1Gchil4429.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 266855..267934 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4429.t1.exon1Gchil4429.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 266855..267934 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4429.t1.start1Gchil4429.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 267932..267934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4429.t1Gchil4429.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 266855..267934 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4429.t1 ID=Gchil4429.t1|Name=Gchil4429.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=360bp
MRDNAQLWVEKYRPRAVSEVAHQEEVVATLQKAVKEPAGRGDLPHLLLYG
PPGTGKTSTALALCRDLFGPQNYRSRVLELNASDERGIKVVREKIKVFAQ
IAVSSNANTKGSDGKTYPCPPYKIIILDEADAITTDAQTALRRTMEAYSR
VTRFIIICNYISRIIGPLASRCAKFRFNPLPLEAMKTYLGRIATAELVNV
SDETLEALINASEGDLRKAINTMQSAQRIRSEAQLDIDSISAAACLVPPS
VVEAFDMAITAKGVTNASVRKAADEILVEGYSSSQLLTQYGDRLIGRKPN
KGISTLSDLQKAAVSLVLADAEKALIDGCDEKVQLYDIASRISRIANTAD
ESIATLRKS*
back to top

spliced messenger RNA

>Gchil4429.t1 ID=Gchil4429.t1|Name=Gchil4429.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00004426_pilon:266855..267934- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGATAATGCGCAACTTTGGGTCGAGAAATACCGGCCGCGGGCTGT
ATCAGAGGTTGCTCACCAAGAGGAAGTGGTGGCCACGCTGCAAAAAGCGG
TGAAAGAACCGGCTGGGAGAGGCGATCTCCCACACCTTTTGCTGTACGGA
CCACCGGGCACAGGGAAGACTTCCACTGCCTTGGCTCTTTGCCGAGACTT
ATTTGGTCCCCAGAACTATCGCTCAAGAGTGTTGGAGCTTAATGCATCAG
ACGAGCGAGGAATCAAAGTTGTGCGAGAAAAGATTAAAGTCTTCGCTCAG
ATCGCAGTATCTTCAAATGCTAACACGAAAGGATCTGATGGAAAAACTTA
TCCGTGCCCGCCTTACAAGATAATAATTTTGGACGAAGCTGATGCGATTA
CCACCGATGCACAGACAGCCCTTCGAAGAACAATGGAGGCATATTCAAGA
GTAACCAGATTTATTATCATTTGCAACTATATCAGTCGCATCATTGGCCC
GCTAGCCTCAAGGTGTGCGAAGTTTCGGTTTAATCCCCTACCTCTTGAGG
CAATGAAAACTTATTTGGGAAGAATCGCCACTGCTGAGCTGGTCAATGTA
TCGGACGAAACTCTGGAAGCGTTAATCAACGCATCGGAAGGTGACTTGCG
TAAAGCGATCAACACAATGCAGTCAGCTCAGCGAATACGATCTGAAGCCC
AACTTGACATTGATAGCATCTCTGCCGCTGCATGTCTCGTTCCCCCTTCT
GTTGTAGAAGCATTTGATATGGCAATAACCGCGAAGGGTGTCACAAATGC
ATCGGTACGGAAGGCTGCTGACGAAATATTGGTTGAGGGATACTCATCTA
GTCAACTTTTGACGCAGTATGGGGATCGCCTTATTGGGAGAAAGCCCAAC
AAGGGCATCAGTACGCTGAGTGATTTGCAGAAGGCCGCCGTATCGCTGGT
ACTAGCAGATGCTGAAAAGGCCCTTATTGATGGTTGTGATGAGAAAGTGC
AGCTTTATGACATTGCTTCAAGGATTTCTAGAATAGCAAATACTGCTGAT
GAGAGCATTGCCACGCTTCGAAAATCATGA
back to top

protein sequence of Gchil4429.t1

>Gchil4429.t1 ID=Gchil4429.t1|Name=Gchil4429.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=360bp
MRDNAQLWVEKYRPRAVSEVAHQEEVVATLQKAVKEPAGRGDLPHLLLYG
PPGTGKTSTALALCRDLFGPQNYRSRVLELNASDERGIKVVREKIKVFAQ
IAVSSNANTKGSDGKTYPCPPYKIIILDEADAITTDAQTALRRTMEAYSR
VTRFIIICNYISRIIGPLASRCAKFRFNPLPLEAMKTYLGRIATAELVNV
SDETLEALINASEGDLRKAINTMQSAQRIRSEAQLDIDSISAAACLVPPS
VVEAFDMAITAKGVTNASVRKAADEILVEGYSSSQLLTQYGDRLIGRKPN
KGISTLSDLQKAAVSLVLADAEKALIDGCDEKVQLYDIASRISRIANTAD
ESIATLRKS*
back to top

mRNA from alignment at tig00004426_pilon:266855..267934-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4429.t1 ID=Gchil4429.t1|Name=Gchil4429.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00004426_pilon:266855..267934- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGGATAATGCGCAACTTTGGGTCGAGAAATACCGGCCGCGGGCTGT
ATCAGAGGTTGCTCACCAAGAGGAAGTGGTGGCCACGCTGCAAAAAGCGG
TGAAAGAACCGGCTGGGAGAGGCGATCTCCCACACCTTTTGCTGTACGGA
CCACCGGGCACAGGGAAGACTTCCACTGCCTTGGCTCTTTGCCGAGACTT
ATTTGGTCCCCAGAACTATCGCTCAAGAGTGTTGGAGCTTAATGCATCAG
ACGAGCGAGGAATCAAAGTTGTGCGAGAAAAGATTAAAGTCTTCGCTCAG
ATCGCAGTATCTTCAAATGCTAACACGAAAGGATCTGATGGAAAAACTTA
TCCGTGCCCGCCTTACAAGATAATAATTTTGGACGAAGCTGATGCGATTA
CCACCGATGCACAGACAGCCCTTCGAAGAACAATGGAGGCATATTCAAGA
GTAACCAGATTTATTATCATTTGCAACTATATCAGTCGCATCATTGGCCC
GCTAGCCTCAAGGTGTGCGAAGTTTCGGTTTAATCCCCTACCTCTTGAGG
CAATGAAAACTTATTTGGGAAGAATCGCCACTGCTGAGCTGGTCAATGTA
TCGGACGAAACTCTGGAAGCGTTAATCAACGCATCGGAAGGTGACTTGCG
TAAAGCGATCAACACAATGCAGTCAGCTCAGCGAATACGATCTGAAGCCC
AACTTGACATTGATAGCATCTCTGCCGCTGCATGTCTCGTTCCCCCTTCT
GTTGTAGAAGCATTTGATATGGCAATAACCGCGAAGGGTGTCACAAATGC
ATCGGTACGGAAGGCTGCTGACGAAATATTGGTTGAGGGATACTCATCTA
GTCAACTTTTGACGCAGTATGGGGATCGCCTTATTGGGAGAAAGCCCAAC
AAGGGCATCAGTACGCTGAGTGATTTGCAGAAGGCCGCCGTATCGCTGGT
ACTAGCAGATGCTGAAAAGGCCCTTATTGATGGTTGTGATGAGAAAGTGC
AGCTTTATGACATTGCTTCAAGGATTTCTAGAATAGCAAATACTGCTGAT
GAGAGCATTGCCACGCTTCGAAAATCATGA
back to top

Coding sequence (CDS) from alignment at tig00004426_pilon:266855..267934-

>Gchil4429.t1 ID=Gchil4429.t1|Name=Gchil4429.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1080bp|location=Sequence derived from alignment at tig00004426_pilon:266855..267934- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGGATAATGCGCAACTTTGGGTCGAGAAATACCGGCCGCGGGCTGT
ATCAGAGGTTGCTCACCAAGAGGAAGTGGTGGCCACGCTGCAAAAAGCGG
TGAAAGAACCGGCTGGGAGAGGCGATCTCCCACACCTTTTGCTGTACGGA
CCACCGGGCACAGGGAAGACTTCCACTGCCTTGGCTCTTTGCCGAGACTT
ATTTGGTCCCCAGAACTATCGCTCAAGAGTGTTGGAGCTTAATGCATCAG
ACGAGCGAGGAATCAAAGTTGTGCGAGAAAAGATTAAAGTCTTCGCTCAG
ATCGCAGTATCTTCAAATGCTAACACGAAAGGATCTGATGGAAAAACTTA
TCCGTGCCCGCCTTACAAGATAATAATTTTGGACGAAGCTGATGCGATTA
CCACCGATGCACAGACAGCCCTTCGAAGAACAATGGAGGCATATTCAAGA
GTAACCAGATTTATTATCATTTGCAACTATATCAGTCGCATCATTGGCCC
GCTAGCCTCAAGGTGTGCGAAGTTTCGGTTTAATCCCCTACCTCTTGAGG
CAATGAAAACTTATTTGGGAAGAATCGCCACTGCTGAGCTGGTCAATGTA
TCGGACGAAACTCTGGAAGCGTTAATCAACGCATCGGAAGGTGACTTGCG
TAAAGCGATCAACACAATGCAGTCAGCTCAGCGAATACGATCTGAAGCCC
AACTTGACATTGATAGCATCTCTGCCGCTGCATGTCTCGTTCCCCCTTCT
GTTGTAGAAGCATTTGATATGGCAATAACCGCGAAGGGTGTCACAAATGC
ATCGGTACGGAAGGCTGCTGACGAAATATTGGTTGAGGGATACTCATCTA
GTCAACTTTTGACGCAGTATGGGGATCGCCTTATTGGGAGAAAGCCCAAC
AAGGGCATCAGTACGCTGAGTGATTTGCAGAAGGCCGCCGTATCGCTGGT
ACTAGCAGATGCTGAAAAGGCCCTTATTGATGGTTGTGATGAGAAAGTGC
AGCTTTATGACATTGCTTCAAGGATTTCTAGAATAGCAAATACTGCTGAT
GAGAGCATTGCCACGCTTCGAAAATCATGA
back to top