Gchil4428.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4428.t1
Unique Name	Gchil4428.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	397

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004426_pilon	contig	tig00004426_pilon:265143..266333 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38727.Pavir.J16604.1.p
PFAMs	SLAC1
Max annot lvl	35493\|Streptophyta
Evalue	8.53e-20
EggNOG OGs	28IA4@1\|root,2QQKN@2759\|Eukaryota,37JZS@33090\|Viridiplantae,3G826@35493\|Streptophyta,3KUW0@4447\|Liliopsida,3IM6U@38820\|Poales
Description	Voltage-dependent anion channel
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4428	Gchil4428	Gracilaria chilensis NLEC103_M9 male	gene	tig00004426_pilon 265143..266333 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4428.t1.start1	Gchil4428.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004426_pilon 265143..265145 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4428.t1.CDS1	Gchil4428.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004426_pilon 265143..266333 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4428.t1.exon1	Gchil4428.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004426_pilon 265143..266333 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4428.t1.stop1	Gchil4428.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004426_pilon 266331..266333 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4428.t1	Gchil4428.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004426_pilon 265143..266333 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004426_pilon:265143..266333+
coding sequence from alignment at tig00004426_pilon:265143..266333+

mRNA sequence

>Gchil4428.t1 ID=Gchil4428.t1|Name=Gchil4428.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=397bp
MDSELYSPDMNPTIAPPARWRQKVVQFDMAHNSIALAFYAVTATLRLSSR
VGSPQRVADVFFGISAAVLAICTTLTLVRSYIFPAAFVQDFHNPRLINFF
YLPPIIATLTLTSLPLAVRFYVPMAVVFYTSAVYQVGLSLFLYGNWLYKV
SLSNTIYPLIFMQTVGYFLLSIVASQLVLPELSFFFLTTAILFWLLIFVT
LFQQSPVTLAKTNENPSPIFFLFLAPTAQATIATLFLLAARTVPDDFPAR
TLLPTERLPWSVGAELAHYVNLFLYLLMLRLIPLWINRPFSVVWWAYVFP
LAGATGAILLRYEKVRSPFWLVMTVISGSLTAIAMTVVTFYTVRGLLKGT
FPDNKKNRKAYEVFWNGRNRMSRMKVPPGVSGDSLSAPNTENSDNV*

spliced messenger RNA

>Gchil4428.t1 ID=Gchil4428.t1|Name=Gchil4428.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1191bp|location=Sequence derived from alignment at tig00004426_pilon:265143..266333+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCTGAGCTATATTCTCCCGACATGAATCCCACCATTGCACCACC
TGCGCGGTGGCGACAGAAGGTTGTGCAGTTTGATATGGCGCACAACTCAA
TCGCACTTGCCTTTTATGCCGTGACTGCAACCCTGCGACTTTCCTCACGA
GTCGGCTCGCCCCAGAGAGTTGCTGATGTCTTTTTCGGCATCTCCGCCGC
CGTTCTCGCGATATGTACAACCTTGACCTTGGTACGATCCTACATCTTCC
CTGCCGCGTTCGTTCAAGACTTCCATAATCCTCGGCTCATCAACTTCTTC
TACCTACCACCCATCATCGCAACATTGACGTTGACATCCTTACCATTGGC
GGTGCGTTTTTACGTTCCTATGGCCGTCGTCTTCTATACATCCGCCGTGT
ATCAAGTTGGTCTCTCTCTCTTTCTCTACGGAAATTGGCTGTACAAAGTA
TCCCTTTCGAACACAATCTACCCGCTTATCTTCATGCAAACTGTTGGTTA
CTTTCTTCTTTCCATCGTCGCTTCACAACTTGTTTTACCTGAATTGTCAT
TTTTCTTTCTCACTACGGCCATTCTCTTCTGGCTTCTGATTTTCGTCACT
CTCTTCCAGCAATCTCCTGTAACGCTTGCGAAGACAAACGAAAATCCATC
TCCGATCTTTTTCCTATTTTTGGCTCCAACAGCCCAGGCGACGATTGCCA
CGTTATTCCTACTTGCCGCAAGAACCGTACCTGACGATTTTCCAGCACGC
ACACTGCTCCCTACGGAGAGATTGCCGTGGTCAGTTGGAGCTGAATTAGC
GCACTATGTTAATCTTTTCCTTTATCTGCTCATGCTGCGCTTGATACCAC
TGTGGATTAATCGACCATTTTCAGTCGTGTGGTGGGCATATGTCTTCCCC
TTAGCCGGGGCCACAGGTGCAATTCTGCTTCGCTACGAAAAGGTGCGAAG
TCCTTTCTGGCTTGTGATGACAGTTATTTCTGGATCCCTCACCGCAATAG
CCATGACTGTTGTAACTTTCTACACAGTGCGAGGATTGTTGAAGGGTACC
TTTCCAGACAACAAAAAGAACAGAAAGGCTTACGAAGTGTTTTGGAATGG
TAGAAACCGCATGTCACGGATGAAAGTTCCTCCGGGAGTATCTGGAGACA
GCCTCTCAGCACCCAATACTGAAAACTCGGACAACGTATAA

protein sequence of Gchil4428.t1

>Gchil4428.t1 ID=Gchil4428.t1|Name=Gchil4428.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=397bp
MDSELYSPDMNPTIAPPARWRQKVVQFDMAHNSIALAFYAVTATLRLSSR
VGSPQRVADVFFGISAAVLAICTTLTLVRSYIFPAAFVQDFHNPRLINFF
YLPPIIATLTLTSLPLAVRFYVPMAVVFYTSAVYQVGLSLFLYGNWLYKV
SLSNTIYPLIFMQTVGYFLLSIVASQLVLPELSFFFLTTAILFWLLIFVT
LFQQSPVTLAKTNENPSPIFFLFLAPTAQATIATLFLLAARTVPDDFPAR
TLLPTERLPWSVGAELAHYVNLFLYLLMLRLIPLWINRPFSVVWWAYVFP
LAGATGAILLRYEKVRSPFWLVMTVISGSLTAIAMTVVTFYTVRGLLKGT
FPDNKKNRKAYEVFWNGRNRMSRMKVPPGVSGDSLSAPNTENSDNV*

mRNA from alignment at tig00004426_pilon:265143..266333+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4428.t1 ID=Gchil4428.t1|Name=Gchil4428.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1191bp|location=Sequence derived from alignment at tig00004426_pilon:265143..266333+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATTCTGAGCTATATTCTCCCGACATGAATCCCACCATTGCACCACC
TGCGCGGTGGCGACAGAAGGTTGTGCAGTTTGATATGGCGCACAACTCAA
TCGCACTTGCCTTTTATGCCGTGACTGCAACCCTGCGACTTTCCTCACGA
GTCGGCTCGCCCCAGAGAGTTGCTGATGTCTTTTTCGGCATCTCCGCCGC
CGTTCTCGCGATATGTACAACCTTGACCTTGGTACGATCCTACATCTTCC
CTGCCGCGTTCGTTCAAGACTTCCATAATCCTCGGCTCATCAACTTCTTC
TACCTACCACCCATCATCGCAACATTGACGTTGACATCCTTACCATTGGC
GGTGCGTTTTTACGTTCCTATGGCCGTCGTCTTCTATACATCCGCCGTGT
ATCAAGTTGGTCTCTCTCTCTTTCTCTACGGAAATTGGCTGTACAAAGTA
TCCCTTTCGAACACAATCTACCCGCTTATCTTCATGCAAACTGTTGGTTA
CTTTCTTCTTTCCATCGTCGCTTCACAACTTGTTTTACCTGAATTGTCAT
TTTTCTTTCTCACTACGGCCATTCTCTTCTGGCTTCTGATTTTCGTCACT
CTCTTCCAGCAATCTCCTGTAACGCTTGCGAAGACAAACGAAAATCCATC
TCCGATCTTTTTCCTATTTTTGGCTCCAACAGCCCAGGCGACGATTGCCA
CGTTATTCCTACTTGCCGCAAGAACCGTACCTGACGATTTTCCAGCACGC
ACACTGCTCCCTACGGAGAGATTGCCGTGGTCAGTTGGAGCTGAATTAGC
GCACTATGTTAATCTTTTCCTTTATCTGCTCATGCTGCGCTTGATACCAC
TGTGGATTAATCGACCATTTTCAGTCGTGTGGTGGGCATATGTCTTCCCC
TTAGCCGGGGCCACAGGTGCAATTCTGCTTCGCTACGAAAAGGTGCGAAG
TCCTTTCTGGCTTGTGATGACAGTTATTTCTGGATCCCTCACCGCAATAG
CCATGACTGTTGTAACTTTCTACACAGTGCGAGGATTGTTGAAGGGTACC
TTTCCAGACAACAAAAAGAACAGAAAGGCTTACGAAGTGTTTTGGAATGG
TAGAAACCGCATGTCACGGATGAAAGTTCCTCCGGGAGTATCTGGAGACA
GCCTCTCAGCACCCAATACTGAAAACTCGGACAACGTATAA

Coding sequence (CDS) from alignment at tig00004426_pilon:265143..266333+

>Gchil4428.t1 ID=Gchil4428.t1|Name=Gchil4428.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1191bp|location=Sequence derived from alignment at tig00004426_pilon:265143..266333+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATTCTGAGCTATATTCTCCCGACATGAATCCCACCATTGCACCACC
TGCGCGGTGGCGACAGAAGGTTGTGCAGTTTGATATGGCGCACAACTCAA
TCGCACTTGCCTTTTATGCCGTGACTGCAACCCTGCGACTTTCCTCACGA
GTCGGCTCGCCCCAGAGAGTTGCTGATGTCTTTTTCGGCATCTCCGCCGC
CGTTCTCGCGATATGTACAACCTTGACCTTGGTACGATCCTACATCTTCC
CTGCCGCGTTCGTTCAAGACTTCCATAATCCTCGGCTCATCAACTTCTTC
TACCTACCACCCATCATCGCAACATTGACGTTGACATCCTTACCATTGGC
GGTGCGTTTTTACGTTCCTATGGCCGTCGTCTTCTATACATCCGCCGTGT
ATCAAGTTGGTCTCTCTCTCTTTCTCTACGGAAATTGGCTGTACAAAGTA
TCCCTTTCGAACACAATCTACCCGCTTATCTTCATGCAAACTGTTGGTTA
CTTTCTTCTTTCCATCGTCGCTTCACAACTTGTTTTACCTGAATTGTCAT
TTTTCTTTCTCACTACGGCCATTCTCTTCTGGCTTCTGATTTTCGTCACT
CTCTTCCAGCAATCTCCTGTAACGCTTGCGAAGACAAACGAAAATCCATC
TCCGATCTTTTTCCTATTTTTGGCTCCAACAGCCCAGGCGACGATTGCCA
CGTTATTCCTACTTGCCGCAAGAACCGTACCTGACGATTTTCCAGCACGC
ACACTGCTCCCTACGGAGAGATTGCCGTGGTCAGTTGGAGCTGAATTAGC
GCACTATGTTAATCTTTTCCTTTATCTGCTCATGCTGCGCTTGATACCAC
TGTGGATTAATCGACCATTTTCAGTCGTGTGGTGGGCATATGTCTTCCCC
TTAGCCGGGGCCACAGGTGCAATTCTGCTTCGCTACGAAAAGGTGCGAAG
TCCTTTCTGGCTTGTGATGACAGTTATTTCTGGATCCCTCACCGCAATAG
CCATGACTGTTGTAACTTTCTACACAGTGCGAGGATTGTTGAAGGGTACC
TTTCCAGACAACAAAAAGAACAGAAAGGCTTACGAAGTGTTTTGGAATGG
TAGAAACCGCATGTCACGGATGAAAGTTCCTCCGGGAGTATCTGGAGACA
GCCTCTCAGCACCCAATACTGAAAACTCGGACAACGTATAA