Gchil4427.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4427.t1
Unique NameGchil4427.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length260
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:263199..264104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4427Gchil4427Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 263199..264104 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4427.t1Gchil4427.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 263199..264104 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4427.t1.stop1Gchil4427.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 263199..263201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4427.t1.CDS1Gchil4427.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 263199..263584 -
Gchil4427.t1.CDS2Gchil4427.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 263711..264104 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4427.t1.exon1Gchil4427.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 263199..263584 -
Gchil4427.t1.exon2Gchil4427.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 263711..264104 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4427.t1.intron1Gchil4427.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 263585..263710 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4427.t1.start1Gchil4427.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 264102..264104 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4427.t1 ID=Gchil4427.t1|Name=Gchil4427.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=260bp
MEVVIAASIIAQVSVIAIDKFTARYDAVTRLRETNHEANRHQDESEPQRW
TRPQTQAASISERQVEMTEQNLHVDPQVEAIPDEHSIEFLEHRLMDLRNQ
ARQLNAPDTLVQYARVTREANKVEKALNEKKAEKAPSAKIPLETAPFIGA
LSELIKPGVGVVRHGVTSNMVRNIPRIVAFLFLWYYFSWRPDSANQGIAM
TVDCRALRPISFLFRKLSPACLEDDWICVAQASQTPQCVISYSWALILCN
MFISALLHA*
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spliced messenger RNA

>Gchil4427.t1 ID=Gchil4427.t1|Name=Gchil4427.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=780bp|location=Sequence derived from alignment at tig00004426_pilon:263199..264104- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTAGTCATCGCAGCGAGCATCATTGCACAGGTGAGCGTCATCGC
TATCGATAAGTTCACAGCAAGATATGACGCTGTCACTCGATTGAGAGAGA
CAAACCACGAAGCCAATAGGCATCAAGATGAAAGCGAGCCGCAGCGATGG
ACTCGGCCCCAAACTCAGGCCGCATCAATTTCAGAGCGGCAAGTCGAAAT
GACTGAACAAAATCTTCATGTGGACCCTCAGGTAGAAGCAATACCAGATG
AACACAGCATTGAGTTCCTGGAGCATCGCCTTATGGATTTGAGAAACCAG
GCAAGGCAGCTTAATGCTCCGGATACGCTTGTTCAGTATGCTCGTGTCAC
TCGCGAAGCCAACAAAGTTGAGAAGGCTTTAAATGAAAAGAAAGCTGAAA
AAGCGCCAAGTGCTAAAATCCCTCTGGAAACAGCTCCTTTCATAGGTGCT
CTTTCTGAACTGATTAAGCCAGGGGTTGGAGTTGTACGCCACGGTGTAAC
AAGTAATATGGTTCGGAACATCCCAAGAATTGTGGCGTTTCTTTTCTTAT
GGTATTACTTTTCATGGCGACCCGATTCCGCAAATCAAGGAATAGCCATG
ACGGTGGACTGCCGAGCCTTGAGACCTATATCTTTTCTTTTCCGAAAGCT
CTCGCCCGCTTGTTTGGAAGACGATTGGATATGCGTAGCCCAGGCATCAC
AAACGCCTCAATGTGTGATTTCGTACTCGTGGGCGCTCATCCTTTGCAAC
ATGTTTATCTCGGCTCTTCTCCACGCATGA
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protein sequence of Gchil4427.t1

>Gchil4427.t1 ID=Gchil4427.t1|Name=Gchil4427.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=260bp
MEVVIAASIIAQVSVIAIDKFTARYDAVTRLRETNHEANRHQDESEPQRW
TRPQTQAASISERQVEMTEQNLHVDPQVEAIPDEHSIEFLEHRLMDLRNQ
ARQLNAPDTLVQYARVTREANKVEKALNEKKAEKAPSAKIPLETAPFIGA
LSELIKPGVGVVRHGVTSNMVRNIPRIVAFLFLWYYFSWRPDSANQGIAM
TVDCRALRPISFLFRKLSPACLEDDWICVAQASQTPQCVISYSWALILCN
MFISALLHA*
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mRNA from alignment at tig00004426_pilon:263199..264104-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4427.t1 ID=Gchil4427.t1|Name=Gchil4427.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00004426_pilon:263199..264104- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGTAGTCATCGCAGCGAGCATCATTGCACAGGTGAGCGTCATCGC
TATCGATAAGTTCACAGCAAGATATGACGCTGTCACTCGATTGAGAGAGA
CAAACCACGAAGCCAATAGGCATCAAGATGAAAGCGAGCCGCAGCGATGG
ACTCGGCCCCAAACTCAGGCCGCATCAATTTCAGAGCGGCAAGTCGAAAT
GACTGAACAAAATCTTCATGTGGACCCTCAGGTAGAAGCAATACCAGATG
AACACAGCATTGAGTTCCTGGAGCATCGCCTTATGGATTTGAGAAACCAG
GCAAGGCAGCTTAATGCTCCGGATACGCTTGTTCAGTATGCTCGTGTCAC
TCGCGAAGCCAACAAAGTTGAGAAGGCTTTAAATGAAAAGAAAGGTGAGT
GTATGTTTACGTACGCATTTATTAGTCAGGAGCAACATGACACACGGTGA
ACCTCGCCTCCTGCCGTAGAACAGAACACTGACCAATACTTCTTTTCCTA
TTGGATTTCGCACGAGACAGCTGAAAAAGCGCCAAGTGCTAAAATCCCTC
TGGAAACAGCTCCTTTCATAGGTGCTCTTTCTGAACTGATTAAGCCAGGG
GTTGGAGTTGTACGCCACGGTGTAACAAGTAATATGGTTCGGAACATCCC
AAGAATTGTGGCGTTTCTTTTCTTATGGTATTACTTTTCATGGCGACCCG
ATTCCGCAAATCAAGGAATAGCCATGACGGTGGACTGCCGAGCCTTGAGA
CCTATATCTTTTCTTTTCCGAAAGCTCTCGCCCGCTTGTTTGGAAGACGA
TTGGATATGCGTAGCCCAGGCATCACAAACGCCTCAATGTGTGATTTCGT
ACTCGTGGGCGCTCATCCTTTGCAACATGTTTATCTCGGCTCTTCTCCAC
GCATGA
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Coding sequence (CDS) from alignment at tig00004426_pilon:263199..264104-

>Gchil4427.t1 ID=Gchil4427.t1|Name=Gchil4427.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=780bp|location=Sequence derived from alignment at tig00004426_pilon:263199..264104- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGTAGTCATCGCAGCGAGCATCATTGCACAGGTGAGCGTCATCGC
TATCGATAAGTTCACAGCAAGATATGACGCTGTCACTCGATTGAGAGAGA
CAAACCACGAAGCCAATAGGCATCAAGATGAAAGCGAGCCGCAGCGATGG
ACTCGGCCCCAAACTCAGGCCGCATCAATTTCAGAGCGGCAAGTCGAAAT
GACTGAACAAAATCTTCATGTGGACCCTCAGGTAGAAGCAATACCAGATG
AACACAGCATTGAGTTCCTGGAGCATCGCCTTATGGATTTGAGAAACCAG
GCAAGGCAGCTTAATGCTCCGGATACGCTTGTTCAGTATGCTCGTGTCAC
TCGCGAAGCCAACAAAGTTGAGAAGGCTTTAAATGAAAAGAAAGCTGAAA
AAGCGCCAAGTGCTAAAATCCCTCTGGAAACAGCTCCTTTCATAGGTGCT
CTTTCTGAACTGATTAAGCCAGGGGTTGGAGTTGTACGCCACGGTGTAAC
AAGTAATATGGTTCGGAACATCCCAAGAATTGTGGCGTTTCTTTTCTTAT
GGTATTACTTTTCATGGCGACCCGATTCCGCAAATCAAGGAATAGCCATG
ACGGTGGACTGCCGAGCCTTGAGACCTATATCTTTTCTTTTCCGAAAGCT
CTCGCCCGCTTGTTTGGAAGACGATTGGATATGCGTAGCCCAGGCATCAC
AAACGCCTCAATGTGTGATTTCGTACTCGTGGGCGCTCATCCTTTGCAAC
ATGTTTATCTCGGCTCTTCTCCACGCATGA
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