Gchil4425.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4425.t1
Unique NameGchil4425.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:260105..261340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123236.KB899383_gene2620
PFAMsRRM_1
Max annot lvl1236|Gammaproteobacteria
Evalue0.000198
EggNOG OGsCOG0724@1|root,COG0724@2|Bacteria,1N0P8@1224|Proteobacteria,1S987@1236|Gammaproteobacteria,467ZT@72275|Alteromonadaceae
DescriptionCOG0724 RNA-binding proteins (RRM domain)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4425Gchil4425Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 260105..261340 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4425.t1.stop1Gchil4425.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 260105..260107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4425.t1.CDS1Gchil4425.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 260105..261340 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4425.t1.exon1Gchil4425.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 260105..261340 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4425.t1.start1Gchil4425.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 261338..261340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4425.t1Gchil4425.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 260105..261340 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4425.t1 ID=Gchil4425.t1|Name=Gchil4425.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=412bp
MDDDWASDGEEEGLGDLSDLPVIDIPPQQRHNPVPPHKSLHPPTSERPPP
RQNAWTKPNQSHQVRAAAQQPPQPRPQHRRQNSFPASFGSKLDRFDSDPH
SQQRRASNAPSITLYATNLPYETNEQAIADFFNENTINVFGIRLMRHSDT
GNIKAALVTIAADHVTKALATDGKLFGGRTIYVKVDGTDGKRGSRDKDRG
DRGLNKTSSFGSSFGSRVAPNGNSRSGTVWNDRGPGHSFDSQLTRRPSDN
SREDRRSRAASHSTDPTIPTGPPPAGRKKLQLMPRTKPPPSLQADKRNAP
ASKAPQTAMPAPGRPEHDTSVQSKGGPAPRRVNSLGGERFSRSDSNDDKF
DKVEKRDRGGRASGESASNWTNLKETNVSRPPPHPTKKEDDSKRPVLLNT
FAALESNDSDV*
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spliced messenger RNA

>Gchil4425.t1 ID=Gchil4425.t1|Name=Gchil4425.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00004426_pilon:260105..261340- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGACGACTGGGCTTCGGATGGCGAAGAGGAAGGCCTTGGTGACCT
TTCTGATCTTCCGGTCATCGATATCCCTCCCCAACAACGTCACAATCCAG
TCCCTCCGCACAAGTCTCTGCATCCGCCCACTTCAGAGCGCCCCCCACCC
CGCCAAAACGCCTGGACTAAGCCCAACCAATCCCATCAAGTGCGAGCCGC
CGCCCAACAACCCCCGCAGCCCCGTCCCCAGCATCGTAGGCAAAATTCGT
TCCCTGCCTCCTTTGGTTCCAAGCTGGACAGATTTGATTCAGATCCCCAC
TCTCAACAACGTCGAGCCTCCAATGCACCCTCCATCACCCTCTACGCCAC
CAACCTTCCGTATGAGACCAATGAGCAAGCAATTGCCGATTTCTTCAACG
AAAACACCATTAATGTCTTTGGAATTCGACTTATGAGGCATTCCGATACA
GGCAATATTAAGGCCGCCCTCGTCACTATTGCTGCCGATCATGTCACCAA
GGCACTCGCCACCGACGGAAAGCTGTTTGGAGGAAGAACAATATATGTCA
AAGTCGATGGTACCGATGGAAAACGCGGAAGTCGAGACAAAGACCGTGGC
GACCGCGGTCTCAACAAAACTTCTTCCTTTGGCTCTTCGTTTGGATCCAG
AGTGGCTCCAAACGGTAACTCTCGCTCGGGTACCGTGTGGAATGATCGTG
GTCCGGGTCACAGCTTTGACAGCCAACTCACTCGACGCCCAAGTGATAAC
TCTCGCGAAGATCGGCGGTCTCGCGCAGCTTCCCACTCGACAGATCCAAC
CATTCCCACTGGCCCCCCACCAGCTGGCCGTAAGAAGCTCCAATTAATGC
CTCGTACAAAGCCCCCACCTTCTTTACAAGCAGATAAGCGCAATGCACCC
GCTTCCAAGGCGCCGCAAACGGCCATGCCAGCTCCTGGGAGGCCAGAACA
TGACACTTCTGTCCAATCAAAGGGCGGTCCAGCACCTCGAAGAGTAAATA
GCCTTGGAGGAGAACGTTTCAGTCGAAGTGACAGTAACGATGACAAGTTT
GACAAGGTCGAAAAACGTGACCGAGGTGGAAGAGCGTCCGGTGAATCGGC
AAGCAATTGGACCAATTTGAAAGAAACCAACGTATCTCGACCACCGCCCC
ACCCTACAAAGAAGGAAGATGATTCGAAAAGACCCGTGTTGTTGAATACC
TTTGCGGCCCTTGAGTCAAATGACTCAGATGTGTGA
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protein sequence of Gchil4425.t1

>Gchil4425.t1 ID=Gchil4425.t1|Name=Gchil4425.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=412bp
MDDDWASDGEEEGLGDLSDLPVIDIPPQQRHNPVPPHKSLHPPTSERPPP
RQNAWTKPNQSHQVRAAAQQPPQPRPQHRRQNSFPASFGSKLDRFDSDPH
SQQRRASNAPSITLYATNLPYETNEQAIADFFNENTINVFGIRLMRHSDT
GNIKAALVTIAADHVTKALATDGKLFGGRTIYVKVDGTDGKRGSRDKDRG
DRGLNKTSSFGSSFGSRVAPNGNSRSGTVWNDRGPGHSFDSQLTRRPSDN
SREDRRSRAASHSTDPTIPTGPPPAGRKKLQLMPRTKPPPSLQADKRNAP
ASKAPQTAMPAPGRPEHDTSVQSKGGPAPRRVNSLGGERFSRSDSNDDKF
DKVEKRDRGGRASGESASNWTNLKETNVSRPPPHPTKKEDDSKRPVLLNT
FAALESNDSDV*
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mRNA from alignment at tig00004426_pilon:260105..261340-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4425.t1 ID=Gchil4425.t1|Name=Gchil4425.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00004426_pilon:260105..261340- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGACGACTGGGCTTCGGATGGCGAAGAGGAAGGCCTTGGTGACCT
TTCTGATCTTCCGGTCATCGATATCCCTCCCCAACAACGTCACAATCCAG
TCCCTCCGCACAAGTCTCTGCATCCGCCCACTTCAGAGCGCCCCCCACCC
CGCCAAAACGCCTGGACTAAGCCCAACCAATCCCATCAAGTGCGAGCCGC
CGCCCAACAACCCCCGCAGCCCCGTCCCCAGCATCGTAGGCAAAATTCGT
TCCCTGCCTCCTTTGGTTCCAAGCTGGACAGATTTGATTCAGATCCCCAC
TCTCAACAACGTCGAGCCTCCAATGCACCCTCCATCACCCTCTACGCCAC
CAACCTTCCGTATGAGACCAATGAGCAAGCAATTGCCGATTTCTTCAACG
AAAACACCATTAATGTCTTTGGAATTCGACTTATGAGGCATTCCGATACA
GGCAATATTAAGGCCGCCCTCGTCACTATTGCTGCCGATCATGTCACCAA
GGCACTCGCCACCGACGGAAAGCTGTTTGGAGGAAGAACAATATATGTCA
AAGTCGATGGTACCGATGGAAAACGCGGAAGTCGAGACAAAGACCGTGGC
GACCGCGGTCTCAACAAAACTTCTTCCTTTGGCTCTTCGTTTGGATCCAG
AGTGGCTCCAAACGGTAACTCTCGCTCGGGTACCGTGTGGAATGATCGTG
GTCCGGGTCACAGCTTTGACAGCCAACTCACTCGACGCCCAAGTGATAAC
TCTCGCGAAGATCGGCGGTCTCGCGCAGCTTCCCACTCGACAGATCCAAC
CATTCCCACTGGCCCCCCACCAGCTGGCCGTAAGAAGCTCCAATTAATGC
CTCGTACAAAGCCCCCACCTTCTTTACAAGCAGATAAGCGCAATGCACCC
GCTTCCAAGGCGCCGCAAACGGCCATGCCAGCTCCTGGGAGGCCAGAACA
TGACACTTCTGTCCAATCAAAGGGCGGTCCAGCACCTCGAAGAGTAAATA
GCCTTGGAGGAGAACGTTTCAGTCGAAGTGACAGTAACGATGACAAGTTT
GACAAGGTCGAAAAACGTGACCGAGGTGGAAGAGCGTCCGGTGAATCGGC
AAGCAATTGGACCAATTTGAAAGAAACCAACGTATCTCGACCACCGCCCC
ACCCTACAAAGAAGGAAGATGATTCGAAAAGACCCGTGTTGTTGAATACC
TTTGCGGCCCTTGAGTCAAATGACTCAGATGTGTGA
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Coding sequence (CDS) from alignment at tig00004426_pilon:260105..261340-

>Gchil4425.t1 ID=Gchil4425.t1|Name=Gchil4425.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00004426_pilon:260105..261340- (Gracilaria chilensis NLEC103_M9 male)
ATGGATGACGACTGGGCTTCGGATGGCGAAGAGGAAGGCCTTGGTGACCT
TTCTGATCTTCCGGTCATCGATATCCCTCCCCAACAACGTCACAATCCAG
TCCCTCCGCACAAGTCTCTGCATCCGCCCACTTCAGAGCGCCCCCCACCC
CGCCAAAACGCCTGGACTAAGCCCAACCAATCCCATCAAGTGCGAGCCGC
CGCCCAACAACCCCCGCAGCCCCGTCCCCAGCATCGTAGGCAAAATTCGT
TCCCTGCCTCCTTTGGTTCCAAGCTGGACAGATTTGATTCAGATCCCCAC
TCTCAACAACGTCGAGCCTCCAATGCACCCTCCATCACCCTCTACGCCAC
CAACCTTCCGTATGAGACCAATGAGCAAGCAATTGCCGATTTCTTCAACG
AAAACACCATTAATGTCTTTGGAATTCGACTTATGAGGCATTCCGATACA
GGCAATATTAAGGCCGCCCTCGTCACTATTGCTGCCGATCATGTCACCAA
GGCACTCGCCACCGACGGAAAGCTGTTTGGAGGAAGAACAATATATGTCA
AAGTCGATGGTACCGATGGAAAACGCGGAAGTCGAGACAAAGACCGTGGC
GACCGCGGTCTCAACAAAACTTCTTCCTTTGGCTCTTCGTTTGGATCCAG
AGTGGCTCCAAACGGTAACTCTCGCTCGGGTACCGTGTGGAATGATCGTG
GTCCGGGTCACAGCTTTGACAGCCAACTCACTCGACGCCCAAGTGATAAC
TCTCGCGAAGATCGGCGGTCTCGCGCAGCTTCCCACTCGACAGATCCAAC
CATTCCCACTGGCCCCCCACCAGCTGGCCGTAAGAAGCTCCAATTAATGC
CTCGTACAAAGCCCCCACCTTCTTTACAAGCAGATAAGCGCAATGCACCC
GCTTCCAAGGCGCCGCAAACGGCCATGCCAGCTCCTGGGAGGCCAGAACA
TGACACTTCTGTCCAATCAAAGGGCGGTCCAGCACCTCGAAGAGTAAATA
GCCTTGGAGGAGAACGTTTCAGTCGAAGTGACAGTAACGATGACAAGTTT
GACAAGGTCGAAAAACGTGACCGAGGTGGAAGAGCGTCCGGTGAATCGGC
AAGCAATTGGACCAATTTGAAAGAAACCAACGTATCTCGACCACCGCCCC
ACCCTACAAAGAAGGAAGATGATTCGAAAAGACCCGTGTTGTTGAATACC
TTTGCGGCCCTTGAGTCAAATGACTCAGATGTGTGA
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