Gchil4420.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4420.t1
Unique NameGchil4420.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:244123..244842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4420Gchil4420Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 244123..244842 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4420.t1.stop1Gchil4420.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 244123..244125 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4420.t1.CDS1Gchil4420.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 244123..244842 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4420.t1.exon1Gchil4420.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 244123..244842 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4420.t1.start1Gchil4420.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 244840..244842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4420.t1Gchil4420.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 244123..244842 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4420.t1 ID=Gchil4420.t1|Name=Gchil4420.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=240bp
MTCTRCSSYFCWRCKGYLNNGCPLPGRPCICDSVMTAAAYSALTVAGVAA
SPLIAATVLVAAPPYLAYRVVNARRARALAAHRTNQQQQQPLCTAHHNLR
HPNNPFIAPTRTILRPDQLLVNDDDLDSASFITITDPAFDHPRIAHPHRL
TRQRKSKPTDTLLIEERNLRPSRSASRLSVTPVERPLAAGEVVIVPPPST
SSDPVPTVFVEACRTTRPFVLERRRGSSPLPPTMKRSVA*
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spliced messenger RNA

>Gchil4420.t1 ID=Gchil4420.t1|Name=Gchil4420.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00004426_pilon:244123..244842- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTGCACCCGATGCTCTTCCTACTTTTGCTGGCGCTGCAAGGGCTA
TCTTAACAATGGCTGTCCGCTGCCCGGTCGCCCGTGCATCTGCGACTCGG
TCATGACCGCCGCCGCCTACTCCGCGCTCACCGTTGCCGGCGTTGCCGCC
TCCCCCCTCATCGCCGCCACCGTCTTGGTCGCCGCCCCCCCTTACCTGGC
CTACCGCGTGGTCAACGCCCGTCGCGCGCGCGCCCTAGCCGCCCATCGCA
CCAACCAACAACAACAACAACCGCTGTGCACCGCACACCACAATCTGCGC
CACCCCAACAACCCATTCATCGCCCCAACCCGCACCATCCTCCGCCCCGA
CCAGCTGCTCGTCAATGACGACGACCTCGACAGCGCCTCCTTCATCACCA
TAACCGACCCTGCATTCGATCACCCCCGCATCGCCCATCCCCACCGCCTC
ACCCGTCAGCGCAAGTCCAAGCCCACCGACACTCTTCTTATTGAGGAGCG
CAACCTGCGTCCGTCGCGCTCCGCTTCGCGTCTGTCCGTCACCCCCGTCG
AACGCCCATTAGCAGCCGGCGAAGTCGTCATTGTTCCGCCCCCGTCCACG
TCATCAGATCCCGTTCCCACCGTGTTTGTCGAAGCTTGTCGTACCACTCG
CCCCTTCGTTCTGGAGCGGCGGCGGGGCTCTTCTCCACTGCCGCCCACCA
TGAAGCGCTCTGTCGCGTGA
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protein sequence of Gchil4420.t1

>Gchil4420.t1 ID=Gchil4420.t1|Name=Gchil4420.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=240bp
MTCTRCSSYFCWRCKGYLNNGCPLPGRPCICDSVMTAAAYSALTVAGVAA
SPLIAATVLVAAPPYLAYRVVNARRARALAAHRTNQQQQQPLCTAHHNLR
HPNNPFIAPTRTILRPDQLLVNDDDLDSASFITITDPAFDHPRIAHPHRL
TRQRKSKPTDTLLIEERNLRPSRSASRLSVTPVERPLAAGEVVIVPPPST
SSDPVPTVFVEACRTTRPFVLERRRGSSPLPPTMKRSVA*
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mRNA from alignment at tig00004426_pilon:244123..244842-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4420.t1 ID=Gchil4420.t1|Name=Gchil4420.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00004426_pilon:244123..244842- (Gracilaria chilensis NLEC103_M9 male)
ATGACGTGCACCCGATGCTCTTCCTACTTTTGCTGGCGCTGCAAGGGCTA
TCTTAACAATGGCTGTCCGCTGCCCGGTCGCCCGTGCATCTGCGACTCGG
TCATGACCGCCGCCGCCTACTCCGCGCTCACCGTTGCCGGCGTTGCCGCC
TCCCCCCTCATCGCCGCCACCGTCTTGGTCGCCGCCCCCCCTTACCTGGC
CTACCGCGTGGTCAACGCCCGTCGCGCGCGCGCCCTAGCCGCCCATCGCA
CCAACCAACAACAACAACAACCGCTGTGCACCGCACACCACAATCTGCGC
CACCCCAACAACCCATTCATCGCCCCAACCCGCACCATCCTCCGCCCCGA
CCAGCTGCTCGTCAATGACGACGACCTCGACAGCGCCTCCTTCATCACCA
TAACCGACCCTGCATTCGATCACCCCCGCATCGCCCATCCCCACCGCCTC
ACCCGTCAGCGCAAGTCCAAGCCCACCGACACTCTTCTTATTGAGGAGCG
CAACCTGCGTCCGTCGCGCTCCGCTTCGCGTCTGTCCGTCACCCCCGTCG
AACGCCCATTAGCAGCCGGCGAAGTCGTCATTGTTCCGCCCCCGTCCACG
TCATCAGATCCCGTTCCCACCGTGTTTGTCGAAGCTTGTCGTACCACTCG
CCCCTTCGTTCTGGAGCGGCGGCGGGGCTCTTCTCCACTGCCGCCCACCA
TGAAGCGCTCTGTCGCGTGA
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Coding sequence (CDS) from alignment at tig00004426_pilon:244123..244842-

>Gchil4420.t1 ID=Gchil4420.t1|Name=Gchil4420.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=720bp|location=Sequence derived from alignment at tig00004426_pilon:244123..244842- (Gracilaria chilensis NLEC103_M9 male)
ATGACGTGCACCCGATGCTCTTCCTACTTTTGCTGGCGCTGCAAGGGCTA
TCTTAACAATGGCTGTCCGCTGCCCGGTCGCCCGTGCATCTGCGACTCGG
TCATGACCGCCGCCGCCTACTCCGCGCTCACCGTTGCCGGCGTTGCCGCC
TCCCCCCTCATCGCCGCCACCGTCTTGGTCGCCGCCCCCCCTTACCTGGC
CTACCGCGTGGTCAACGCCCGTCGCGCGCGCGCCCTAGCCGCCCATCGCA
CCAACCAACAACAACAACAACCGCTGTGCACCGCACACCACAATCTGCGC
CACCCCAACAACCCATTCATCGCCCCAACCCGCACCATCCTCCGCCCCGA
CCAGCTGCTCGTCAATGACGACGACCTCGACAGCGCCTCCTTCATCACCA
TAACCGACCCTGCATTCGATCACCCCCGCATCGCCCATCCCCACCGCCTC
ACCCGTCAGCGCAAGTCCAAGCCCACCGACACTCTTCTTATTGAGGAGCG
CAACCTGCGTCCGTCGCGCTCCGCTTCGCGTCTGTCCGTCACCCCCGTCG
AACGCCCATTAGCAGCCGGCGAAGTCGTCATTGTTCCGCCCCCGTCCACG
TCATCAGATCCCGTTCCCACCGTGTTTGTCGAAGCTTGTCGTACCACTCG
CCCCTTCGTTCTGGAGCGGCGGCGGGGCTCTTCTCCACTGCCGCCCACCA
TGAAGCGCTCTGTCGCGTGA
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