Gchil4418.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4418.t1
Unique NameGchil4418.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length526
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:238715..240292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4418Gchil4418Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 238715..240292 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4418.t1.stop1Gchil4418.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 238715..238717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4418.t1.CDS1Gchil4418.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 238715..240292 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4418.t1.exon1Gchil4418.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 238715..240292 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4418.t1.start1Gchil4418.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 240290..240292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4418.t1Gchil4418.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 238715..240292 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4418.t1 ID=Gchil4418.t1|Name=Gchil4418.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=526bp
MAPKRPDLLLDARPSRRRRFAAYSLTFACMLALSLLLDLRRAAHRRRPQK
LQLTLPARTSLQSLGEDDSRPHSPAAHPDPHHHTAPSPLPTAPPTSSSSS
SSSSSSSPSSAAAAAADHHHRPNPVPAPVPNPNPNPNPNLSDQELRDDVD
QLIAHVDQQQHHASSVTNPNASLPYPHPTPPAAAAAAAAAAAAAAAPPTA
ANTTAAADHSRLDAPAAPAPLPVNASDLDVRLNSQQYFDDAQARLARMLA
DSHTQPLIDENDLRTLQALQLQATRGDCEHSSDRDATLFKTDAEVASNLD
IERSDPLWGAWCLFLGSYKTDAMRDFVTKQQLLEHRVAALREQLPDQLNL
THASSDFDPDAASLDDVITPEQQSALRANIDRILSHLREIDVRYLAALSL
QATFGDCAPYAPPAHPDHPVDSADARLLRLLKEPLLEQTAVRRQGAQWGA
WCVLQGKKRATAASHLAHRVDMLVDQLSKSEAEAEAKDAADAAAAAAAAE
HTLAEEERRADRTLHDELGLAASTR*
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spliced messenger RNA

>Gchil4418.t1 ID=Gchil4418.t1|Name=Gchil4418.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1578bp|location=Sequence derived from alignment at tig00004426_pilon:238715..240292- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCAAGCGCCCCGACCTGCTGCTGGACGCCCGTCCGTCGCGCCG
CCGCCGCTTCGCCGCCTACTCGCTCACCTTCGCCTGTATGCTCGCTCTCT
CCTTGCTGCTCGACCTGCGTCGCGCCGCCCACCGTCGCCGCCCCCAAAAG
CTACAGCTCACCCTACCCGCCCGCACCTCGCTTCAGAGCCTTGGCGAAGA
CGACTCGCGCCCGCACTCCCCCGCCGCCCACCCCGACCCGCACCACCACA
CCGCGCCCTCTCCACTGCCCACAGCGCCCCCTACCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCTTCCCCCTCCTCCGCCGCCGCCGCCGCCGCCGA
TCATCATCATCGCCCCAACCCCGTCCCCGCCCCCGTCCCCAACCCCAACC
CCAACCCCAACCCCAACCTCTCCGACCAGGAGCTGCGCGACGACGTCGAC
CAGCTCATCGCCCACGTCGACCAGCAGCAGCATCACGCCTCCTCTGTCAC
AAATCCCAACGCATCGCTTCCGTACCCCCATCCCACCCCGCCCGCCGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCCGCCGCCGCCGCCCCCCCCACCGCC
GCCAACACCACCGCTGCCGCCGACCACTCACGCCTCGACGCGCCCGCCGC
CCCCGCCCCGCTCCCCGTCAACGCCTCCGACCTCGACGTGCGCCTCAACT
CGCAGCAGTACTTTGACGACGCCCAGGCCCGTTTGGCCCGCATGCTCGCC
GATTCCCACACCCAACCTCTCATCGACGAGAACGACCTGCGCACCCTACA
GGCCCTGCAGCTGCAGGCCACGCGCGGCGACTGCGAGCACTCGTCGGACC
GCGACGCAACCCTGTTCAAGACCGATGCAGAGGTCGCTTCCAACCTTGAC
ATTGAGCGTTCCGACCCGCTTTGGGGCGCATGGTGCCTCTTTCTGGGCTC
GTACAAGACCGATGCCATGCGCGACTTTGTCACCAAGCAACAGCTGTTGG
AGCATCGTGTCGCCGCCCTGCGCGAACAGCTTCCGGACCAACTTAACCTT
ACACACGCGTCGTCCGACTTTGACCCCGATGCCGCCTCGCTGGACGACGT
TATCACCCCCGAGCAACAGTCAGCCCTGCGCGCAAACATTGATCGCATCT
TGTCCCACCTCAGGGAAATTGACGTCCGCTACCTCGCCGCCCTCTCCCTG
CAGGCCACTTTTGGCGATTGCGCCCCCTACGCTCCGCCCGCTCACCCCGA
TCACCCCGTCGACTCCGCCGATGCGCGCCTCCTGCGCCTCCTCAAGGAAC
CTCTTTTGGAGCAGACCGCCGTGCGCAGACAGGGCGCCCAGTGGGGCGCT
TGGTGCGTTTTACAGGGCAAGAAACGTGCTACCGCTGCCTCGCACCTCGC
CCATAGAGTTGACATGCTTGTCGATCAGCTTTCTAAGAGCGAGGCTGAGG
CTGAGGCAAAGGATGCTGCCGATGCTGCCGCTGCTGCCGCTGCTGCTGAA
CATACGCTGGCCGAGGAGGAGCGCCGCGCCGACCGCACGCTTCATGATGA
GCTTGGTCTCGCCGCCTCGACAAGATGA
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protein sequence of Gchil4418.t1

>Gchil4418.t1 ID=Gchil4418.t1|Name=Gchil4418.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=526bp
MAPKRPDLLLDARPSRRRRFAAYSLTFACMLALSLLLDLRRAAHRRRPQK
LQLTLPARTSLQSLGEDDSRPHSPAAHPDPHHHTAPSPLPTAPPTSSSSS
SSSSSSSPSSAAAAAADHHHRPNPVPAPVPNPNPNPNPNLSDQELRDDVD
QLIAHVDQQQHHASSVTNPNASLPYPHPTPPAAAAAAAAAAAAAAAPPTA
ANTTAAADHSRLDAPAAPAPLPVNASDLDVRLNSQQYFDDAQARLARMLA
DSHTQPLIDENDLRTLQALQLQATRGDCEHSSDRDATLFKTDAEVASNLD
IERSDPLWGAWCLFLGSYKTDAMRDFVTKQQLLEHRVAALREQLPDQLNL
THASSDFDPDAASLDDVITPEQQSALRANIDRILSHLREIDVRYLAALSL
QATFGDCAPYAPPAHPDHPVDSADARLLRLLKEPLLEQTAVRRQGAQWGA
WCVLQGKKRATAASHLAHRVDMLVDQLSKSEAEAEAKDAADAAAAAAAAE
HTLAEEERRADRTLHDELGLAASTR*
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mRNA from alignment at tig00004426_pilon:238715..240292-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4418.t1 ID=Gchil4418.t1|Name=Gchil4418.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1578bp|location=Sequence derived from alignment at tig00004426_pilon:238715..240292- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCAAGCGCCCCGACCTGCTGCTGGACGCCCGTCCGTCGCGCCG
CCGCCGCTTCGCCGCCTACTCGCTCACCTTCGCCTGTATGCTCGCTCTCT
CCTTGCTGCTCGACCTGCGTCGCGCCGCCCACCGTCGCCGCCCCCAAAAG
CTACAGCTCACCCTACCCGCCCGCACCTCGCTTCAGAGCCTTGGCGAAGA
CGACTCGCGCCCGCACTCCCCCGCCGCCCACCCCGACCCGCACCACCACA
CCGCGCCCTCTCCACTGCCCACAGCGCCCCCTACCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCTTCCCCCTCCTCCGCCGCCGCCGCCGCCGCCGA
TCATCATCATCGCCCCAACCCCGTCCCCGCCCCCGTCCCCAACCCCAACC
CCAACCCCAACCCCAACCTCTCCGACCAGGAGCTGCGCGACGACGTCGAC
CAGCTCATCGCCCACGTCGACCAGCAGCAGCATCACGCCTCCTCTGTCAC
AAATCCCAACGCATCGCTTCCGTACCCCCATCCCACCCCGCCCGCCGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCCGCCGCCGCCGCCCCCCCCACCGCC
GCCAACACCACCGCTGCCGCCGACCACTCACGCCTCGACGCGCCCGCCGC
CCCCGCCCCGCTCCCCGTCAACGCCTCCGACCTCGACGTGCGCCTCAACT
CGCAGCAGTACTTTGACGACGCCCAGGCCCGTTTGGCCCGCATGCTCGCC
GATTCCCACACCCAACCTCTCATCGACGAGAACGACCTGCGCACCCTACA
GGCCCTGCAGCTGCAGGCCACGCGCGGCGACTGCGAGCACTCGTCGGACC
GCGACGCAACCCTGTTCAAGACCGATGCAGAGGTCGCTTCCAACCTTGAC
ATTGAGCGTTCCGACCCGCTTTGGGGCGCATGGTGCCTCTTTCTGGGCTC
GTACAAGACCGATGCCATGCGCGACTTTGTCACCAAGCAACAGCTGTTGG
AGCATCGTGTCGCCGCCCTGCGCGAACAGCTTCCGGACCAACTTAACCTT
ACACACGCGTCGTCCGACTTTGACCCCGATGCCGCCTCGCTGGACGACGT
TATCACCCCCGAGCAACAGTCAGCCCTGCGCGCAAACATTGATCGCATCT
TGTCCCACCTCAGGGAAATTGACGTCCGCTACCTCGCCGCCCTCTCCCTG
CAGGCCACTTTTGGCGATTGCGCCCCCTACGCTCCGCCCGCTCACCCCGA
TCACCCCGTCGACTCCGCCGATGCGCGCCTCCTGCGCCTCCTCAAGGAAC
CTCTTTTGGAGCAGACCGCCGTGCGCAGACAGGGCGCCCAGTGGGGCGCT
TGGTGCGTTTTACAGGGCAAGAAACGTGCTACCGCTGCCTCGCACCTCGC
CCATAGAGTTGACATGCTTGTCGATCAGCTTTCTAAGAGCGAGGCTGAGG
CTGAGGCAAAGGATGCTGCCGATGCTGCCGCTGCTGCCGCTGCTGCTGAA
CATACGCTGGCCGAGGAGGAGCGCCGCGCCGACCGCACGCTTCATGATGA
GCTTGGTCTCGCCGCCTCGACAAGATGA
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Coding sequence (CDS) from alignment at tig00004426_pilon:238715..240292-

>Gchil4418.t1 ID=Gchil4418.t1|Name=Gchil4418.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1578bp|location=Sequence derived from alignment at tig00004426_pilon:238715..240292- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCAAGCGCCCCGACCTGCTGCTGGACGCCCGTCCGTCGCGCCG
CCGCCGCTTCGCCGCCTACTCGCTCACCTTCGCCTGTATGCTCGCTCTCT
CCTTGCTGCTCGACCTGCGTCGCGCCGCCCACCGTCGCCGCCCCCAAAAG
CTACAGCTCACCCTACCCGCCCGCACCTCGCTTCAGAGCCTTGGCGAAGA
CGACTCGCGCCCGCACTCCCCCGCCGCCCACCCCGACCCGCACCACCACA
CCGCGCCCTCTCCACTGCCCACAGCGCCCCCTACCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCTTCCCCCTCCTCCGCCGCCGCCGCCGCCGCCGA
TCATCATCATCGCCCCAACCCCGTCCCCGCCCCCGTCCCCAACCCCAACC
CCAACCCCAACCCCAACCTCTCCGACCAGGAGCTGCGCGACGACGTCGAC
CAGCTCATCGCCCACGTCGACCAGCAGCAGCATCACGCCTCCTCTGTCAC
AAATCCCAACGCATCGCTTCCGTACCCCCATCCCACCCCGCCCGCCGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCCGCCGCCGCCGCCCCCCCCACCGCC
GCCAACACCACCGCTGCCGCCGACCACTCACGCCTCGACGCGCCCGCCGC
CCCCGCCCCGCTCCCCGTCAACGCCTCCGACCTCGACGTGCGCCTCAACT
CGCAGCAGTACTTTGACGACGCCCAGGCCCGTTTGGCCCGCATGCTCGCC
GATTCCCACACCCAACCTCTCATCGACGAGAACGACCTGCGCACCCTACA
GGCCCTGCAGCTGCAGGCCACGCGCGGCGACTGCGAGCACTCGTCGGACC
GCGACGCAACCCTGTTCAAGACCGATGCAGAGGTCGCTTCCAACCTTGAC
ATTGAGCGTTCCGACCCGCTTTGGGGCGCATGGTGCCTCTTTCTGGGCTC
GTACAAGACCGATGCCATGCGCGACTTTGTCACCAAGCAACAGCTGTTGG
AGCATCGTGTCGCCGCCCTGCGCGAACAGCTTCCGGACCAACTTAACCTT
ACACACGCGTCGTCCGACTTTGACCCCGATGCCGCCTCGCTGGACGACGT
TATCACCCCCGAGCAACAGTCAGCCCTGCGCGCAAACATTGATCGCATCT
TGTCCCACCTCAGGGAAATTGACGTCCGCTACCTCGCCGCCCTCTCCCTG
CAGGCCACTTTTGGCGATTGCGCCCCCTACGCTCCGCCCGCTCACCCCGA
TCACCCCGTCGACTCCGCCGATGCGCGCCTCCTGCGCCTCCTCAAGGAAC
CTCTTTTGGAGCAGACCGCCGTGCGCAGACAGGGCGCCCAGTGGGGCGCT
TGGTGCGTTTTACAGGGCAAGAAACGTGCTACCGCTGCCTCGCACCTCGC
CCATAGAGTTGACATGCTTGTCGATCAGCTTTCTAAGAGCGAGGCTGAGG
CTGAGGCAAAGGATGCTGCCGATGCTGCCGCTGCTGCCGCTGCTGCTGAA
CATACGCTGGCCGAGGAGGAGCGCCGCGCCGACCGCACGCTTCATGATGA
GCTTGGTCTCGCCGCCTCGACAAGATGA
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