Gchil4417.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4417.t1
Unique Name	Gchil4417.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	250

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004426_pilon	contig	tig00004426_pilon:236091..236840 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1123240.ATVO01000003_gene561
PFAMs	Methyltransf_11,Methyltransf_23
Max annot lvl	204457\|Sphingomonadales
Evalue	4.12e-14
EggNOG OGs	COG0500@1\|root,COG2226@2\|Bacteria,1RANW@1224\|Proteobacteria,2U66N@28211\|Alphaproteobacteria,2K411@204457\|Sphingomonadales
Description	ubiE/COQ5 methyltransferase family
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4417	Gchil4417	Gracilaria chilensis NLEC103_M9 male	gene	tig00004426_pilon 236091..236840 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4417.t1.start1	Gchil4417.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004426_pilon 236091..236093 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4417.t1.CDS1	Gchil4417.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004426_pilon 236091..236840 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4417.t1.exon1	Gchil4417.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004426_pilon 236091..236840 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4417.t1.stop1	Gchil4417.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004426_pilon 236838..236840 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4417.t1	Gchil4417.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004426_pilon 236091..236840 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004426_pilon:236091..236840+
coding sequence from alignment at tig00004426_pilon:236091..236840+

mRNA sequence

>Gchil4417.t1 ID=Gchil4417.t1|Name=Gchil4417.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=250bp
MRAWRIFLSFIQQLISSFFAWMFDRHEDPPKISEKRRELVDTIPPNTNVL
EIGGGTGSTLDSAAYDGARGRFASLVMMEPDSGMRSRLEAKLRSRRSAVA
ATEAKVVDGALPKMPFEDDCFEAVVYFFVHSHVSDRPSAVEEIVRILAPG
GMLLFMDHGAHPDSSPHSHTEEGAHDAHDHSHPRPFFFEWFKFQNYRRRH
DHLSLDLVLKELKDHPSLEELFESRMEIDEAFFKEICYGCFKKRSDPDS*

spliced messenger RNA

>Gchil4417.t1 ID=Gchil4417.t1|Name=Gchil4417.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=750bp|location=Sequence derived from alignment at tig00004426_pilon:236091..236840+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGCGTGGCGAATCTTTTTGTCCTTCATTCAGCAGCTGATATCCAG
CTTCTTCGCCTGGATGTTTGACCGTCACGAAGATCCGCCGAAAATTTCTG
AGAAACGTCGTGAACTGGTCGATACTATCCCTCCGAACACAAATGTGCTA
GAGATTGGCGGAGGAACGGGTTCCACACTGGACTCGGCTGCATATGATGG
AGCCAGAGGTCGTTTTGCGTCGCTAGTGATGATGGAGCCTGACAGTGGCA
TGAGGAGTCGGCTGGAAGCCAAGTTGAGATCGCGCCGCTCCGCTGTCGCA
GCGACCGAAGCTAAGGTTGTCGATGGTGCACTACCCAAAATGCCCTTTGA
AGATGATTGCTTTGAAGCTGTCGTGTACTTTTTTGTTCACAGCCATGTGT
CGGATCGTCCCTCGGCGGTCGAGGAGATTGTGAGAATTCTCGCACCGGGG
GGAATGTTACTCTTCATGGATCACGGCGCGCATCCTGATTCTAGTCCTCA
CTCGCACACTGAGGAGGGTGCACATGATGCGCATGATCACTCTCATCCGA
GACCGTTCTTTTTCGAATGGTTTAAGTTTCAAAACTATCGTAGACGACAT
GACCATCTGTCGCTGGATCTAGTTCTAAAAGAGCTCAAAGATCATCCTAG
CTTAGAAGAGCTGTTCGAATCGCGAATGGAAATTGACGAGGCTTTTTTCA
AAGAGATCTGTTATGGCTGCTTTAAGAAACGTTCGGATCCAGACTCCTGA

protein sequence of Gchil4417.t1

>Gchil4417.t1 ID=Gchil4417.t1|Name=Gchil4417.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=250bp
MRAWRIFLSFIQQLISSFFAWMFDRHEDPPKISEKRRELVDTIPPNTNVL
EIGGGTGSTLDSAAYDGARGRFASLVMMEPDSGMRSRLEAKLRSRRSAVA
ATEAKVVDGALPKMPFEDDCFEAVVYFFVHSHVSDRPSAVEEIVRILAPG
GMLLFMDHGAHPDSSPHSHTEEGAHDAHDHSHPRPFFFEWFKFQNYRRRH
DHLSLDLVLKELKDHPSLEELFESRMEIDEAFFKEICYGCFKKRSDPDS*

mRNA from alignment at tig00004426_pilon:236091..236840+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4417.t1 ID=Gchil4417.t1|Name=Gchil4417.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=750bp|location=Sequence derived from alignment at tig00004426_pilon:236091..236840+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGGGCGTGGCGAATCTTTTTGTCCTTCATTCAGCAGCTGATATCCAG
CTTCTTCGCCTGGATGTTTGACCGTCACGAAGATCCGCCGAAAATTTCTG
AGAAACGTCGTGAACTGGTCGATACTATCCCTCCGAACACAAATGTGCTA
GAGATTGGCGGAGGAACGGGTTCCACACTGGACTCGGCTGCATATGATGG
AGCCAGAGGTCGTTTTGCGTCGCTAGTGATGATGGAGCCTGACAGTGGCA
TGAGGAGTCGGCTGGAAGCCAAGTTGAGATCGCGCCGCTCCGCTGTCGCA
GCGACCGAAGCTAAGGTTGTCGATGGTGCACTACCCAAAATGCCCTTTGA
AGATGATTGCTTTGAAGCTGTCGTGTACTTTTTTGTTCACAGCCATGTGT
CGGATCGTCCCTCGGCGGTCGAGGAGATTGTGAGAATTCTCGCACCGGGG
GGAATGTTACTCTTCATGGATCACGGCGCGCATCCTGATTCTAGTCCTCA
CTCGCACACTGAGGAGGGTGCACATGATGCGCATGATCACTCTCATCCGA
GACCGTTCTTTTTCGAATGGTTTAAGTTTCAAAACTATCGTAGACGACAT
GACCATCTGTCGCTGGATCTAGTTCTAAAAGAGCTCAAAGATCATCCTAG
CTTAGAAGAGCTGTTCGAATCGCGAATGGAAATTGACGAGGCTTTTTTCA
AAGAGATCTGTTATGGCTGCTTTAAGAAACGTTCGGATCCAGACTCCTGA

Coding sequence (CDS) from alignment at tig00004426_pilon:236091..236840+

>Gchil4417.t1 ID=Gchil4417.t1|Name=Gchil4417.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=750bp|location=Sequence derived from alignment at tig00004426_pilon:236091..236840+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGGGCGTGGCGAATCTTTTTGTCCTTCATTCAGCAGCTGATATCCAG
CTTCTTCGCCTGGATGTTTGACCGTCACGAAGATCCGCCGAAAATTTCTG
AGAAACGTCGTGAACTGGTCGATACTATCCCTCCGAACACAAATGTGCTA
GAGATTGGCGGAGGAACGGGTTCCACACTGGACTCGGCTGCATATGATGG
AGCCAGAGGTCGTTTTGCGTCGCTAGTGATGATGGAGCCTGACAGTGGCA
TGAGGAGTCGGCTGGAAGCCAAGTTGAGATCGCGCCGCTCCGCTGTCGCA
GCGACCGAAGCTAAGGTTGTCGATGGTGCACTACCCAAAATGCCCTTTGA
AGATGATTGCTTTGAAGCTGTCGTGTACTTTTTTGTTCACAGCCATGTGT
CGGATCGTCCCTCGGCGGTCGAGGAGATTGTGAGAATTCTCGCACCGGGG
GGAATGTTACTCTTCATGGATCACGGCGCGCATCCTGATTCTAGTCCTCA
CTCGCACACTGAGGAGGGTGCACATGATGCGCATGATCACTCTCATCCGA
GACCGTTCTTTTTCGAATGGTTTAAGTTTCAAAACTATCGTAGACGACAT
GACCATCTGTCGCTGGATCTAGTTCTAAAAGAGCTCAAAGATCATCCTAG
CTTAGAAGAGCTGTTCGAATCGCGAATGGAAATTGACGAGGCTTTTTTCA
AAGAGATCTGTTATGGCTGCTTTAAGAAACGTTCGGATCCAGACTCCTGA