Gchil4416.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4416.t1
Unique NameGchil4416.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length467
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:233998..235553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4416Gchil4416Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 233998..235553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4416.t1Gchil4416.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 233998..235553 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4416.t1.start1Gchil4416.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 233998..234000 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4416.t1.CDS1Gchil4416.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 233998..234188 +
Gchil4416.t1.CDS2Gchil4416.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 234344..235553 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4416.t1.exon1Gchil4416.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 233998..234188 +
Gchil4416.t1.exon2Gchil4416.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 234344..235553 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4416.t1.intron1Gchil4416.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 234189..234343 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4416.t1.stop1Gchil4416.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 235551..235553 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4416.t1 ID=Gchil4416.t1|Name=Gchil4416.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=467bp
MAGSMSIVIASLAVFLVSARGEIPAERQENCGSIISSVISVCSHPTLSRP
DWCCNELIKWNNARCWCEPSAFDALDAVANSGNAYSFRDGFCPEAFFRPA
RGTIRPEFATCPPFDSVPDADASEECGIAPADLRVQRLASLESLRGDAVQ
NLADLGPWLGRLDALLADETVFEMVGLFRGHGRFEVKQYFMTRQGLYNFL
PMTSVETANQFWRNPYTVSYSATSTVPEGTFLQQHFVSFERCSARIEKFY
IVDEQYQQRYNQFWDPSSSPLMSRYIKSSAEWCTTVSERCTGETYPFVDD
ADCQAFYNEMKGNGQITCNKFSQAYVPQYAIHGNLIACRSFYLDLAIVEA
AGACPAVGRTPSQTRCDETQCAGAAFVDPAAHSPGEAQFDEALALTCSET
ECTESWPSEEQIALIPVEERGKFVTSADGFTVTGSTTPIVAAGAVEAVNA
EPVSAEEQFGTEGLNV*
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spliced messenger RNA

>Gchil4416.t1 ID=Gchil4416.t1|Name=Gchil4416.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00004426_pilon:233998..235553+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGGCTCAATGAGCATCGTCATTGCATCACTTGCGGTCTTTCTCGT
CAGTGCTCGTGGAGAGATTCCTGCAGAAAGGCAAGAAAACTGTGGTTCTA
TTATTTCTAGCGTGATTTCCGTATGCTCGCACCCCACTTTGTCTAGACCG
GACTGGTGTTGCAATGAACTAATCAAATGGAACAACGCAAGATGCTGGTG
TGAGCCAAGTGCATTCGACGCTCTTGACGCAGTGGCGAACTCCGGCAATG
CGTACTCCTTCCGTGATGGCTTCTGCCCTGAGGCCTTTTTCCGTCCTGCT
CGAGGCACTATTCGACCAGAATTCGCAACATGTCCGCCATTCGACTCCGT
TCCCGATGCAGATGCTTCCGAAGAGTGTGGGATAGCTCCGGCTGACCTTC
GTGTGCAGCGCTTAGCTTCTTTGGAATCGCTCCGGGGAGACGCTGTCCAA
AACTTGGCTGATCTTGGTCCGTGGTTAGGACGCCTGGACGCTTTGCTCGC
CGACGAAACAGTGTTTGAAATGGTGGGCTTGTTCCGAGGCCACGGTCGCT
TTGAGGTGAAGCAATACTTCATGACCCGTCAGGGATTGTACAACTTCTTG
CCGATGACTTCTGTGGAGACGGCTAACCAATTCTGGCGTAACCCGTATAC
TGTGTCTTATTCTGCCACCTCTACCGTACCAGAAGGTACATTCTTGCAAC
AACACTTTGTGAGCTTTGAACGTTGTTCCGCACGAATTGAGAAGTTCTAT
ATTGTGGATGAACAATACCAACAGAGGTATAATCAGTTCTGGGATCCGAG
TTCATCGCCTTTGATGTCGCGTTACATCAAGAGTAGTGCGGAATGGTGCA
CGACTGTGAGCGAGCGTTGCACGGGTGAAACTTATCCTTTTGTCGATGAT
GCTGACTGCCAAGCTTTCTACAACGAGATGAAGGGCAACGGTCAGATCAC
TTGCAACAAATTCTCGCAAGCTTACGTTCCACAATACGCGATTCACGGTA
ACCTTATAGCCTGTCGCAGCTTCTATCTTGATCTGGCTATCGTAGAGGCT
GCTGGAGCTTGCCCGGCGGTGGGAAGAACGCCATCGCAGACTAGATGTGA
TGAAACTCAGTGTGCCGGAGCGGCATTTGTCGATCCTGCAGCTCATAGCC
CTGGTGAAGCTCAGTTTGACGAGGCCCTGGCTTTGACTTGTTCAGAGACT
GAATGCACTGAGAGTTGGCCATCTGAAGAGCAAATCGCATTGATTCCAGT
GGAAGAGAGGGGCAAGTTTGTGACATCGGCTGACGGGTTCACTGTTACGG
GCTCTACCACTCCCATCGTTGCAGCTGGTGCGGTTGAAGCTGTGAACGCT
GAACCTGTGAGCGCAGAGGAACAGTTTGGAACAGAAGGATTGAATGTTTA
A
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protein sequence of Gchil4416.t1

>Gchil4416.t1 ID=Gchil4416.t1|Name=Gchil4416.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=467bp
MAGSMSIVIASLAVFLVSARGEIPAERQENCGSIISSVISVCSHPTLSRP
DWCCNELIKWNNARCWCEPSAFDALDAVANSGNAYSFRDGFCPEAFFRPA
RGTIRPEFATCPPFDSVPDADASEECGIAPADLRVQRLASLESLRGDAVQ
NLADLGPWLGRLDALLADETVFEMVGLFRGHGRFEVKQYFMTRQGLYNFL
PMTSVETANQFWRNPYTVSYSATSTVPEGTFLQQHFVSFERCSARIEKFY
IVDEQYQQRYNQFWDPSSSPLMSRYIKSSAEWCTTVSERCTGETYPFVDD
ADCQAFYNEMKGNGQITCNKFSQAYVPQYAIHGNLIACRSFYLDLAIVEA
AGACPAVGRTPSQTRCDETQCAGAAFVDPAAHSPGEAQFDEALALTCSET
ECTESWPSEEQIALIPVEERGKFVTSADGFTVTGSTTPIVAAGAVEAVNA
EPVSAEEQFGTEGLNV*
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mRNA from alignment at tig00004426_pilon:233998..235553+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4416.t1 ID=Gchil4416.t1|Name=Gchil4416.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1556bp|location=Sequence derived from alignment at tig00004426_pilon:233998..235553+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGGCTCAATGAGCATCGTCATTGCATCACTTGCGGTCTTTCTCGT
CAGTGCTCGTGGAGAGATTCCTGCAGAAAGGCAAGAAAACTGTGGTTCTA
TTATTTCTAGCGTGATTTCCGTATGCTCGCACCCCACTTTGTCTAGACCG
GACTGGTGTTGCAATGAACTAATCAAATGGAACAACGCAAGGTACGTTTT
CAGGTTACGCTGTCCAACTCGCCCATCAACTCCGTATTCGCCAGAACAGG
ACCCACGCTACAGTGTACTAACCTGCACAACATCACATTCGAATTCGTTT
CCTGCACTTTGTTTGGGTCCGTTTCACTCTTATAATGGTATTTTAGATGC
TGGTGTGAGCCAAGTGCATTCGACGCTCTTGACGCAGTGGCGAACTCCGG
CAATGCGTACTCCTTCCGTGATGGCTTCTGCCCTGAGGCCTTTTTCCGTC
CTGCTCGAGGCACTATTCGACCAGAATTCGCAACATGTCCGCCATTCGAC
TCCGTTCCCGATGCAGATGCTTCCGAAGAGTGTGGGATAGCTCCGGCTGA
CCTTCGTGTGCAGCGCTTAGCTTCTTTGGAATCGCTCCGGGGAGACGCTG
TCCAAAACTTGGCTGATCTTGGTCCGTGGTTAGGACGCCTGGACGCTTTG
CTCGCCGACGAAACAGTGTTTGAAATGGTGGGCTTGTTCCGAGGCCACGG
TCGCTTTGAGGTGAAGCAATACTTCATGACCCGTCAGGGATTGTACAACT
TCTTGCCGATGACTTCTGTGGAGACGGCTAACCAATTCTGGCGTAACCCG
TATACTGTGTCTTATTCTGCCACCTCTACCGTACCAGAAGGTACATTCTT
GCAACAACACTTTGTGAGCTTTGAACGTTGTTCCGCACGAATTGAGAAGT
TCTATATTGTGGATGAACAATACCAACAGAGGTATAATCAGTTCTGGGAT
CCGAGTTCATCGCCTTTGATGTCGCGTTACATCAAGAGTAGTGCGGAATG
GTGCACGACTGTGAGCGAGCGTTGCACGGGTGAAACTTATCCTTTTGTCG
ATGATGCTGACTGCCAAGCTTTCTACAACGAGATGAAGGGCAACGGTCAG
ATCACTTGCAACAAATTCTCGCAAGCTTACGTTCCACAATACGCGATTCA
CGGTAACCTTATAGCCTGTCGCAGCTTCTATCTTGATCTGGCTATCGTAG
AGGCTGCTGGAGCTTGCCCGGCGGTGGGAAGAACGCCATCGCAGACTAGA
TGTGATGAAACTCAGTGTGCCGGAGCGGCATTTGTCGATCCTGCAGCTCA
TAGCCCTGGTGAAGCTCAGTTTGACGAGGCCCTGGCTTTGACTTGTTCAG
AGACTGAATGCACTGAGAGTTGGCCATCTGAAGAGCAAATCGCATTGATT
CCAGTGGAAGAGAGGGGCAAGTTTGTGACATCGGCTGACGGGTTCACTGT
TACGGGCTCTACCACTCCCATCGTTGCAGCTGGTGCGGTTGAAGCTGTGA
ACGCTGAACCTGTGAGCGCAGAGGAACAGTTTGGAACAGAAGGATTGAAT
GTTTAA
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Coding sequence (CDS) from alignment at tig00004426_pilon:233998..235553+

>Gchil4416.t1 ID=Gchil4416.t1|Name=Gchil4416.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1401bp|location=Sequence derived from alignment at tig00004426_pilon:233998..235553+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGGCTCAATGAGCATCGTCATTGCATCACTTGCGGTCTTTCTCGT
CAGTGCTCGTGGAGAGATTCCTGCAGAAAGGCAAGAAAACTGTGGTTCTA
TTATTTCTAGCGTGATTTCCGTATGCTCGCACCCCACTTTGTCTAGACCG
GACTGGTGTTGCAATGAACTAATCAAATGGAACAACGCAAGATGCTGGTG
TGAGCCAAGTGCATTCGACGCTCTTGACGCAGTGGCGAACTCCGGCAATG
CGTACTCCTTCCGTGATGGCTTCTGCCCTGAGGCCTTTTTCCGTCCTGCT
CGAGGCACTATTCGACCAGAATTCGCAACATGTCCGCCATTCGACTCCGT
TCCCGATGCAGATGCTTCCGAAGAGTGTGGGATAGCTCCGGCTGACCTTC
GTGTGCAGCGCTTAGCTTCTTTGGAATCGCTCCGGGGAGACGCTGTCCAA
AACTTGGCTGATCTTGGTCCGTGGTTAGGACGCCTGGACGCTTTGCTCGC
CGACGAAACAGTGTTTGAAATGGTGGGCTTGTTCCGAGGCCACGGTCGCT
TTGAGGTGAAGCAATACTTCATGACCCGTCAGGGATTGTACAACTTCTTG
CCGATGACTTCTGTGGAGACGGCTAACCAATTCTGGCGTAACCCGTATAC
TGTGTCTTATTCTGCCACCTCTACCGTACCAGAAGGTACATTCTTGCAAC
AACACTTTGTGAGCTTTGAACGTTGTTCCGCACGAATTGAGAAGTTCTAT
ATTGTGGATGAACAATACCAACAGAGGTATAATCAGTTCTGGGATCCGAG
TTCATCGCCTTTGATGTCGCGTTACATCAAGAGTAGTGCGGAATGGTGCA
CGACTGTGAGCGAGCGTTGCACGGGTGAAACTTATCCTTTTGTCGATGAT
GCTGACTGCCAAGCTTTCTACAACGAGATGAAGGGCAACGGTCAGATCAC
TTGCAACAAATTCTCGCAAGCTTACGTTCCACAATACGCGATTCACGGTA
ACCTTATAGCCTGTCGCAGCTTCTATCTTGATCTGGCTATCGTAGAGGCT
GCTGGAGCTTGCCCGGCGGTGGGAAGAACGCCATCGCAGACTAGATGTGA
TGAAACTCAGTGTGCCGGAGCGGCATTTGTCGATCCTGCAGCTCATAGCC
CTGGTGAAGCTCAGTTTGACGAGGCCCTGGCTTTGACTTGTTCAGAGACT
GAATGCACTGAGAGTTGGCCATCTGAAGAGCAAATCGCATTGATTCCAGT
GGAAGAGAGGGGCAAGTTTGTGACATCGGCTGACGGGTTCACTGTTACGG
GCTCTACCACTCCCATCGTTGCAGCTGGTGCGGTTGAAGCTGTGAACGCT
GAACCTGTGAGCGCAGAGGAACAGTTTGGAACAGAAGGATTGAATGTTTA
A
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