Gchil4406.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4406.t1
Unique NameGchil4406.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length231
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:115106..115976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3983.cassava4.1_015238m
PFAMsKH_2,Ribosomal_S3_C
Max annot lvl35493|Streptophyta
KEGG koko:K02985
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000702,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003735,GO:0003824,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005911,GO:0006139,GO:0006259,GO:0006281,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006974,GO:0008150,GO:0008152,GO:0008534,GO:0009058,GO:0009059,GO:0009506,GO:0009628,GO:0009651,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0019538,GO:0022626,GO:0022627,GO:0030054,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0055044,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.06e-120
EggNOG OGsCOG0092@1|root,KOG3181@2759|Eukaryota,37M1Z@33090|Viridiplantae,3GBVS@35493|Streptophyta,4JDEI@91835|fabids
DescriptionBelongs to the universal ribosomal protein uS3 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4406Gchil4406Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 115106..115976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4406.t1Gchil4406.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 115106..115976 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4406.t1.start1Gchil4406.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 115106..115108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4406.t1.CDS1Gchil4406.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 115106..115501 +
Gchil4406.t1.CDS2Gchil4406.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 115680..115976 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4406.t1.exon1Gchil4406.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 115106..115501 +
Gchil4406.t1.exon2Gchil4406.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 115680..115976 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4406.t1.intron1Gchil4406.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 115502..115679 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4406.t1.stop1Gchil4406.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 115974..115976 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4406.t1 ID=Gchil4406.t1|Name=Gchil4406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=231bp
MAAQISKKKKFVADGVLYAELNELLTRELAEEGYSGVEVRVTPSKTEVVI
RATRTQSVLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIA
QAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTM
KFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGP
QKPLPDVINVIEPKEEFTPPPAPITPVPVM*
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spliced messenger RNA

>Gchil4406.t1 ID=Gchil4406.t1|Name=Gchil4406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00004426_pilon:115106..115976+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCTCAGATCTCCAAGAAAAAGAAGTTTGTAGCGGACGGCGTTCT
GTATGCCGAGCTCAATGAGCTTCTCACTCGCGAATTGGCTGAGGAAGGTT
ACTCTGGAGTCGAAGTTCGTGTAACCCCTTCGAAGACCGAAGTTGTCATT
CGAGCCACCAGAACCCAATCAGTCCTGGGAGAGAAGGGTCGCAGAATCCG
AGAACTCACCGCTGTTGTGCAGAAGCGATTTGCATACCCGGAAAACTCCG
TAGAGCTCTTCGTTGAGAAGGTAGCAAACCGTGGATTGTGCGCCATTGCA
CAAGCCGAAAGTCTCAGATATAAGCTTGTTGGCGGCCTGGCTGTCCGAAG
AGCATGCTATGGTGTGTTGCGATTTGTCATGGAGAACGGCGCAAAGGGCT
GCTCCGTTTCTGTGTCGGGGAAGCTGCGTGCGCAGCGTGCGAAGACCATG
AAGTTCAGCGACGGATACATGATCTCGTCAGGTAATCCGGTGAAGGACTA
CGTCGACACTGCATATCGCCATGTGTTATTGCGACAAGGAGTGCTTGGAA
TCAAGGTTATGATCATGCTTCCGCACGATCCCACCGGAAAAACTGGCCCC
CAGAAGCCGCTACCGGATGTTATCAATGTTATCGAGCCCAAGGAGGAGTT
CACCCCCCCACCGGCTCCTATTACGCCAGTGCCAGTCATGTAA
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protein sequence of Gchil4406.t1

>Gchil4406.t1 ID=Gchil4406.t1|Name=Gchil4406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=231bp
MAAQISKKKKFVADGVLYAELNELLTRELAEEGYSGVEVRVTPSKTEVVI
RATRTQSVLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIA
QAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTM
KFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGP
QKPLPDVINVIEPKEEFTPPPAPITPVPVM*
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mRNA from alignment at tig00004426_pilon:115106..115976+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4406.t1 ID=Gchil4406.t1|Name=Gchil4406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=871bp|location=Sequence derived from alignment at tig00004426_pilon:115106..115976+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCTCAGATCTCCAAGAAAAAGAAGTTTGTAGCGGACGGCGTTCT
GTATGCCGAGCTCAATGAGCTTCTCACTCGCGAATTGGCTGAGGAAGGTT
ACTCTGGAGTCGAAGTTCGTGTAACCCCTTCGAAGACCGAAGTTGTCATT
CGAGCCACCAGAACCCAATCAGTCCTGGGAGAGAAGGGTCGCAGAATCCG
AGAACTCACCGCTGTTGTGCAGAAGCGATTTGCATACCCGGAAAACTCCG
TAGAGCTCTTCGTTGAGAAGGTAGCAAACCGTGGATTGTGCGCCATTGCA
CAAGCCGAAAGTCTCAGATATAAGCTTGTTGGCGGCCTGGCTGTCCGAAG
AGCATGCTATGGTGTGTTGCGATTTGTCATGGAGAACGGCGCAAAGGTAA
GTCCAAAATGTAGCTGACGTCTAACTATGGAATACACGCAAAACCCACAT
CTGGTCTAAAATAGCGCCCGTTGCATGTATTCACACACATAGGTGTATAT
ACCGTATACTGCATACGCAGCCCTACTAACCACTCTCACCCTTGCTTCTT
TGATTTCTTCGGTTCCTTCAATAGGGCTGCTCCGTTTCTGTGTCGGGGAA
GCTGCGTGCGCAGCGTGCGAAGACCATGAAGTTCAGCGACGGATACATGA
TCTCGTCAGGTAATCCGGTGAAGGACTACGTCGACACTGCATATCGCCAT
GTGTTATTGCGACAAGGAGTGCTTGGAATCAAGGTTATGATCATGCTTCC
GCACGATCCCACCGGAAAAACTGGCCCCCAGAAGCCGCTACCGGATGTTA
TCAATGTTATCGAGCCCAAGGAGGAGTTCACCCCCCCACCGGCTCCTATT
ACGCCAGTGCCAGTCATGTAA
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Coding sequence (CDS) from alignment at tig00004426_pilon:115106..115976+

>Gchil4406.t1 ID=Gchil4406.t1|Name=Gchil4406.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=693bp|location=Sequence derived from alignment at tig00004426_pilon:115106..115976+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCTCAGATCTCCAAGAAAAAGAAGTTTGTAGCGGACGGCGTTCT
GTATGCCGAGCTCAATGAGCTTCTCACTCGCGAATTGGCTGAGGAAGGTT
ACTCTGGAGTCGAAGTTCGTGTAACCCCTTCGAAGACCGAAGTTGTCATT
CGAGCCACCAGAACCCAATCAGTCCTGGGAGAGAAGGGTCGCAGAATCCG
AGAACTCACCGCTGTTGTGCAGAAGCGATTTGCATACCCGGAAAACTCCG
TAGAGCTCTTCGTTGAGAAGGTAGCAAACCGTGGATTGTGCGCCATTGCA
CAAGCCGAAAGTCTCAGATATAAGCTTGTTGGCGGCCTGGCTGTCCGAAG
AGCATGCTATGGTGTGTTGCGATTTGTCATGGAGAACGGCGCAAAGGGCT
GCTCCGTTTCTGTGTCGGGGAAGCTGCGTGCGCAGCGTGCGAAGACCATG
AAGTTCAGCGACGGATACATGATCTCGTCAGGTAATCCGGTGAAGGACTA
CGTCGACACTGCATATCGCCATGTGTTATTGCGACAAGGAGTGCTTGGAA
TCAAGGTTATGATCATGCTTCCGCACGATCCCACCGGAAAAACTGGCCCC
CAGAAGCCGCTACCGGATGTTATCAATGTTATCGAGCCCAAGGAGGAGTT
CACCCCCCCACCGGCTCCTATTACGCCAGTGCCAGTCATGTAA
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