Gchil4398.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4398.t1
Unique NameGchil4398.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length753
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:27690..30143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4398Gchil4398Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 27690..30143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4398.t1Gchil4398.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 27690..30143 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4398.t1.start1Gchil4398.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 27690..27692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4398.t1.CDS1Gchil4398.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 27690..29427 +
Gchil4398.t1.CDS2Gchil4398.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 29623..30143 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4398.t1.exon1Gchil4398.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 27690..29427 +
Gchil4398.t1.exon2Gchil4398.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 29623..30143 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4398.t1.intron1Gchil4398.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004426_pilon 29428..29622 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4398.t1.stop1Gchil4398.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 30141..30143 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4398.t1 ID=Gchil4398.t1|Name=Gchil4398.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=753bp
MAALIPKNGSPLPPSSIEDILEAMTRTPTQILGEPPLSPLPKRPVQPPCI
SYEAALAITRSYVDPITLLGESPLPKHLPPKKPRKRARLHSDDELPNTPP
KRRKKGANIPSITITVPKKSEAGVSLSVGEKPSVDPIKQGKSLKLTVRLP
KKTPTALGPVSPSKKEEGVAGCSKPESATKPSAKEPSKQSRRRKEKSRPR
SSPIPASEAVSVQTARRSSPAPESDSQHARKRKDRPALRSSPAPLADTND
VKKVIDKSRSSAAVVSDKKGDRKDAERPMFKSSTVPFSEPKDSRKSSDRS
KPKCSAAEYSDSKESDGRKSKPSPAARADTKESKRKGDRQKSHKSALRES
ESKDGASRSVKKPPSSVPLSRPVVRIPRSEPAASRSTSPEAPRKDKSAKA
TKGNRGSCGKKETTVSRKSSEKERRNEQSISRRRESSVGRSRRDVTKLSR
RRRESSVEVVPSCSKLRDTRKLRSKVDDDGFCDRDEAISRLAEKKLGADG
ENDHALLPVHEGELSKRKGKERRQLRDAHKSVVREKDIEKQTMKETTARK
PMFRSVPASAIVESGVGEAKSSEVAGAVFQKHDDFEETARKGFGVLFKFC
LKKETEMRVLKRLNREWVETRKEALTKYKQLARQYGSQRISELEKIGRMR
TARFLSHQVHKIYVRMFILQRCWNREQRMGENEMKSLMSYLHREGSAADK
NKFLTQRKIGSIANLLNDYANILCLFDTLLSDWTDGDDQAGSEITMPFVG
GE*
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spliced messenger RNA

>Gchil4398.t1 ID=Gchil4398.t1|Name=Gchil4398.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2259bp|location=Sequence derived from alignment at tig00004426_pilon:27690..30143+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCTCTCATTCCGAAAAATGGCTCGCCGTTGCCTCCATCGAGCAT
CGAGGATATCCTCGAAGCCATGACGCGCACTCCCACCCAAATCCTGGGTG
AGCCTCCGTTGTCCCCTCTTCCAAAACGACCTGTCCAACCGCCCTGCATT
TCTTATGAAGCTGCACTTGCCATCACGCGCAGTTACGTCGATCCCATCAC
CTTGCTTGGGGAATCCCCGCTTCCGAAGCACTTGCCGCCCAAAAAGCCCA
GGAAACGGGCTCGCCTTCACAGCGACGACGAGCTTCCAAACACGCCGCCG
AAAAGGCGCAAGAAGGGCGCCAACATTCCGTCCATCACCATCACCGTTCC
GAAGAAGAGCGAGGCGGGTGTGAGCCTGAGCGTTGGTGAGAAGCCCAGCG
TGGATCCTATCAAACAGGGCAAATCGCTCAAGCTCACAGTCAGGCTCCCC
AAAAAGACACCGACTGCACTCGGACCCGTTTCACCGAGCAAAAAGGAGGA
AGGGGTTGCTGGGTGCTCCAAACCCGAAAGCGCCACGAAGCCATCCGCGA
AAGAACCATCCAAACAATCGCGACGCCGGAAGGAAAAGTCGAGGCCCAGG
TCTTCTCCCATCCCTGCTTCAGAGGCGGTGTCCGTTCAGACCGCACGAAG
GTCTTCGCCTGCGCCTGAGTCCGATTCGCAGCACGCGCGGAAGCGAAAGG
ACCGCCCTGCGTTGAGGTCCTCTCCGGCACCACTTGCAGATACGAACGAT
GTGAAGAAAGTCATTGACAAGTCAAGGTCCTCTGCCGCGGTGGTGTCTGA
TAAGAAAGGGGATCGGAAAGACGCCGAGCGACCCATGTTCAAGTCTTCTA
CAGTGCCTTTCTCCGAGCCCAAGGACTCGCGGAAGAGTTCTGATAGGTCT
AAGCCCAAGTGTTCTGCTGCAGAGTACTCTGACTCAAAGGAGAGCGACGG
GCGCAAGTCCAAGCCATCTCCTGCGGCTAGAGCGGACACGAAGGAATCTA
AGAGGAAAGGGGACAGGCAAAAATCGCACAAATCGGCACTTCGTGAGAGC
GAGTCGAAGGATGGTGCTTCCAGGTCGGTCAAGAAGCCTCCTTCGTCCGT
CCCACTTTCTCGCCCTGTGGTTCGCATTCCCCGTTCCGAACCTGCTGCGT
CAAGGTCAACTTCACCGGAAGCACCCCGAAAAGATAAGTCTGCGAAGGCC
ACCAAGGGCAATCGTGGGTCTTGTGGGAAAAAGGAAACGACTGTTTCGCG
AAAGTCGTCGGAGAAAGAGCGGCGTAACGAGCAGAGCATCTCTCGGCGAA
GGGAAAGTTCCGTGGGACGCAGTCGCCGTGATGTCACGAAGCTGTCACGC
AGAAGAAGAGAAAGCTCGGTTGAGGTAGTTCCGTCTTGCTCGAAGCTACG
TGATACTAGAAAGCTGAGGAGTAAAGTCGATGATGATGGGTTTTGCGATA
GGGATGAGGCTATCTCTAGACTAGCTGAAAAGAAACTAGGCGCTGACGGC
GAAAACGATCACGCCCTGCTTCCTGTCCATGAAGGGGAGCTCTCAAAGCG
AAAGGGAAAGGAGCGAAGACAACTCCGAGATGCTCACAAGAGTGTCGTCA
GGGAAAAAGACATCGAAAAGCAAACGATGAAGGAGACGACCGCTCGCAAA
CCCATGTTCAGGTCGGTGCCAGCCAGCGCCATTGTAGAATCGGGAGTTGG
CGAGGCTAAATCGAGTGAGGTTGCTGGTGCAGTGTTTCAGAAACACGATG
ATTTTGAAGAGACAGCAAGAAAAGGGTTTGGTGTCTTATTCAAATTCTGC
CTGAAGAAGGAGACGGAGATGCGTGTACTGAAGCGCTTGAATCGGGAATG
GGTGGAAACTAGGAAAGAAGCGTTGACGAAATACAAACAACTTGCGCGAC
AATATGGATCACAACGCATCTCGGAGTTGGAGAAAATAGGGCGGATGCGA
ACGGCTCGCTTTCTATCTCATCAGGTGCACAAAATATACGTGCGAATGTT
TATTTTACAAAGATGCTGGAACAGAGAACAGCGCATGGGCGAAAATGAGA
TGAAGTCTCTGATGAGTTACTTGCATCGTGAAGGGTCGGCTGCGGACAAG
AACAAGTTCCTGACGCAGAGGAAGATTGGATCCATTGCAAATCTGTTGAA
CGACTATGCCAACATTCTCTGCCTGTTCGACACGTTGTTGTCTGACTGGA
CTGATGGGGATGATCAAGCTGGATCGGAGATTACAATGCCGTTTGTCGGT
GGAGAATGA
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protein sequence of Gchil4398.t1

>Gchil4398.t1 ID=Gchil4398.t1|Name=Gchil4398.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=753bp
MAALIPKNGSPLPPSSIEDILEAMTRTPTQILGEPPLSPLPKRPVQPPCI
SYEAALAITRSYVDPITLLGESPLPKHLPPKKPRKRARLHSDDELPNTPP
KRRKKGANIPSITITVPKKSEAGVSLSVGEKPSVDPIKQGKSLKLTVRLP
KKTPTALGPVSPSKKEEGVAGCSKPESATKPSAKEPSKQSRRRKEKSRPR
SSPIPASEAVSVQTARRSSPAPESDSQHARKRKDRPALRSSPAPLADTND
VKKVIDKSRSSAAVVSDKKGDRKDAERPMFKSSTVPFSEPKDSRKSSDRS
KPKCSAAEYSDSKESDGRKSKPSPAARADTKESKRKGDRQKSHKSALRES
ESKDGASRSVKKPPSSVPLSRPVVRIPRSEPAASRSTSPEAPRKDKSAKA
TKGNRGSCGKKETTVSRKSSEKERRNEQSISRRRESSVGRSRRDVTKLSR
RRRESSVEVVPSCSKLRDTRKLRSKVDDDGFCDRDEAISRLAEKKLGADG
ENDHALLPVHEGELSKRKGKERRQLRDAHKSVVREKDIEKQTMKETTARK
PMFRSVPASAIVESGVGEAKSSEVAGAVFQKHDDFEETARKGFGVLFKFC
LKKETEMRVLKRLNREWVETRKEALTKYKQLARQYGSQRISELEKIGRMR
TARFLSHQVHKIYVRMFILQRCWNREQRMGENEMKSLMSYLHREGSAADK
NKFLTQRKIGSIANLLNDYANILCLFDTLLSDWTDGDDQAGSEITMPFVG
GE*
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mRNA from alignment at tig00004426_pilon:27690..30143+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4398.t1 ID=Gchil4398.t1|Name=Gchil4398.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2454bp|location=Sequence derived from alignment at tig00004426_pilon:27690..30143+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCTCTCATTCCGAAAAATGGCTCGCCGTTGCCTCCATCGAGCAT
CGAGGATATCCTCGAAGCCATGACGCGCACTCCCACCCAAATCCTGGGTG
AGCCTCCGTTGTCCCCTCTTCCAAAACGACCTGTCCAACCGCCCTGCATT
TCTTATGAAGCTGCACTTGCCATCACGCGCAGTTACGTCGATCCCATCAC
CTTGCTTGGGGAATCCCCGCTTCCGAAGCACTTGCCGCCCAAAAAGCCCA
GGAAACGGGCTCGCCTTCACAGCGACGACGAGCTTCCAAACACGCCGCCG
AAAAGGCGCAAGAAGGGCGCCAACATTCCGTCCATCACCATCACCGTTCC
GAAGAAGAGCGAGGCGGGTGTGAGCCTGAGCGTTGGTGAGAAGCCCAGCG
TGGATCCTATCAAACAGGGCAAATCGCTCAAGCTCACAGTCAGGCTCCCC
AAAAAGACACCGACTGCACTCGGACCCGTTTCACCGAGCAAAAAGGAGGA
AGGGGTTGCTGGGTGCTCCAAACCCGAAAGCGCCACGAAGCCATCCGCGA
AAGAACCATCCAAACAATCGCGACGCCGGAAGGAAAAGTCGAGGCCCAGG
TCTTCTCCCATCCCTGCTTCAGAGGCGGTGTCCGTTCAGACCGCACGAAG
GTCTTCGCCTGCGCCTGAGTCCGATTCGCAGCACGCGCGGAAGCGAAAGG
ACCGCCCTGCGTTGAGGTCCTCTCCGGCACCACTTGCAGATACGAACGAT
GTGAAGAAAGTCATTGACAAGTCAAGGTCCTCTGCCGCGGTGGTGTCTGA
TAAGAAAGGGGATCGGAAAGACGCCGAGCGACCCATGTTCAAGTCTTCTA
CAGTGCCTTTCTCCGAGCCCAAGGACTCGCGGAAGAGTTCTGATAGGTCT
AAGCCCAAGTGTTCTGCTGCAGAGTACTCTGACTCAAAGGAGAGCGACGG
GCGCAAGTCCAAGCCATCTCCTGCGGCTAGAGCGGACACGAAGGAATCTA
AGAGGAAAGGGGACAGGCAAAAATCGCACAAATCGGCACTTCGTGAGAGC
GAGTCGAAGGATGGTGCTTCCAGGTCGGTCAAGAAGCCTCCTTCGTCCGT
CCCACTTTCTCGCCCTGTGGTTCGCATTCCCCGTTCCGAACCTGCTGCGT
CAAGGTCAACTTCACCGGAAGCACCCCGAAAAGATAAGTCTGCGAAGGCC
ACCAAGGGCAATCGTGGGTCTTGTGGGAAAAAGGAAACGACTGTTTCGCG
AAAGTCGTCGGAGAAAGAGCGGCGTAACGAGCAGAGCATCTCTCGGCGAA
GGGAAAGTTCCGTGGGACGCAGTCGCCGTGATGTCACGAAGCTGTCACGC
AGAAGAAGAGAAAGCTCGGTTGAGGTAGTTCCGTCTTGCTCGAAGCTACG
TGATACTAGAAAGCTGAGGAGTAAAGTCGATGATGATGGGTTTTGCGATA
GGGATGAGGCTATCTCTAGACTAGCTGAAAAGAAACTAGGCGCTGACGGC
GAAAACGATCACGCCCTGCTTCCTGTCCATGAAGGGGAGCTCTCAAAGCG
AAAGGGAAAGGAGCGAAGACAACTCCGAGATGCTCACAAGAGTGTCGTCA
GGGAAAAAGACATCGAAAAGCAAACGATGAAGGAGACGACCGCTCGCAAA
CCCATGTTCAGGTCGGTGCCAGCCAGCGCCATTGTAGAATCGGGAGTTGG
CGAGGCTAAATCGAGTGAGGTTGCTGGTGCAGTGTTTCGTAGcacgaaag
gatcggcgtcaccagggtcagtgcatgcatccgatccgttgccacggcca
acccatcaccctcccacaaaagaggagcttcggcttttgtcgaggaaact
agagcaattggccacagagcaacgagagctgcTGAGTCAGTTCGACTCGC
TAACCAAACTTTGTGATGGTTTCTTATCAAAAGAGAAACACGATGATTTT
GAAGAGACAGCAAGAAAAGGGTTTGGTGTCTTATTCAAATTCTGCCTGAA
GAAGGAGACGGAGATGCGTGTACTGAAGCGCTTGAATCGGGAATGGGTGG
AAACTAGGAAAGAAGCGTTGACGAAATACAAACAACTTGCGCGACAATAT
GGATCACAACGCATCTCGGAGTTGGAGAAAATAGGGCGGATGCGAACGGC
TCGCTTTCTATCTCATCAGGTGCACAAAATATACGTGCGAATGTTTATTT
TACAAAGATGCTGGAACAGAGAACAGCGCATGGGCGAAAATGAGATGAAG
TCTCTGATGAGTTACTTGCATCGTGAAGGGTCGGCTGCGGACAAGAACAA
GTTCCTGACGCAGAGGAAGATTGGATCCATTGCAAATCTGTTGAACGACT
ATGCCAACATTCTCTGCCTGTTCGACACGTTGTTGTCTGACTGGACTGAT
GGGGATGATCAAGCTGGATCGGAGATTACAATGCCGTTTGTCGGTGGAGA
ATGA
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Coding sequence (CDS) from alignment at tig00004426_pilon:27690..30143+

>Gchil4398.t1 ID=Gchil4398.t1|Name=Gchil4398.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2259bp|location=Sequence derived from alignment at tig00004426_pilon:27690..30143+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCTCTCATTCCGAAAAATGGCTCGCCGTTGCCTCCATCGAGCAT
CGAGGATATCCTCGAAGCCATGACGCGCACTCCCACCCAAATCCTGGGTG
AGCCTCCGTTGTCCCCTCTTCCAAAACGACCTGTCCAACCGCCCTGCATT
TCTTATGAAGCTGCACTTGCCATCACGCGCAGTTACGTCGATCCCATCAC
CTTGCTTGGGGAATCCCCGCTTCCGAAGCACTTGCCGCCCAAAAAGCCCA
GGAAACGGGCTCGCCTTCACAGCGACGACGAGCTTCCAAACACGCCGCCG
AAAAGGCGCAAGAAGGGCGCCAACATTCCGTCCATCACCATCACCGTTCC
GAAGAAGAGCGAGGCGGGTGTGAGCCTGAGCGTTGGTGAGAAGCCCAGCG
TGGATCCTATCAAACAGGGCAAATCGCTCAAGCTCACAGTCAGGCTCCCC
AAAAAGACACCGACTGCACTCGGACCCGTTTCACCGAGCAAAAAGGAGGA
AGGGGTTGCTGGGTGCTCCAAACCCGAAAGCGCCACGAAGCCATCCGCGA
AAGAACCATCCAAACAATCGCGACGCCGGAAGGAAAAGTCGAGGCCCAGG
TCTTCTCCCATCCCTGCTTCAGAGGCGGTGTCCGTTCAGACCGCACGAAG
GTCTTCGCCTGCGCCTGAGTCCGATTCGCAGCACGCGCGGAAGCGAAAGG
ACCGCCCTGCGTTGAGGTCCTCTCCGGCACCACTTGCAGATACGAACGAT
GTGAAGAAAGTCATTGACAAGTCAAGGTCCTCTGCCGCGGTGGTGTCTGA
TAAGAAAGGGGATCGGAAAGACGCCGAGCGACCCATGTTCAAGTCTTCTA
CAGTGCCTTTCTCCGAGCCCAAGGACTCGCGGAAGAGTTCTGATAGGTCT
AAGCCCAAGTGTTCTGCTGCAGAGTACTCTGACTCAAAGGAGAGCGACGG
GCGCAAGTCCAAGCCATCTCCTGCGGCTAGAGCGGACACGAAGGAATCTA
AGAGGAAAGGGGACAGGCAAAAATCGCACAAATCGGCACTTCGTGAGAGC
GAGTCGAAGGATGGTGCTTCCAGGTCGGTCAAGAAGCCTCCTTCGTCCGT
CCCACTTTCTCGCCCTGTGGTTCGCATTCCCCGTTCCGAACCTGCTGCGT
CAAGGTCAACTTCACCGGAAGCACCCCGAAAAGATAAGTCTGCGAAGGCC
ACCAAGGGCAATCGTGGGTCTTGTGGGAAAAAGGAAACGACTGTTTCGCG
AAAGTCGTCGGAGAAAGAGCGGCGTAACGAGCAGAGCATCTCTCGGCGAA
GGGAAAGTTCCGTGGGACGCAGTCGCCGTGATGTCACGAAGCTGTCACGC
AGAAGAAGAGAAAGCTCGGTTGAGGTAGTTCCGTCTTGCTCGAAGCTACG
TGATACTAGAAAGCTGAGGAGTAAAGTCGATGATGATGGGTTTTGCGATA
GGGATGAGGCTATCTCTAGACTAGCTGAAAAGAAACTAGGCGCTGACGGC
GAAAACGATCACGCCCTGCTTCCTGTCCATGAAGGGGAGCTCTCAAAGCG
AAAGGGAAAGGAGCGAAGACAACTCCGAGATGCTCACAAGAGTGTCGTCA
GGGAAAAAGACATCGAAAAGCAAACGATGAAGGAGACGACCGCTCGCAAA
CCCATGTTCAGGTCGGTGCCAGCCAGCGCCATTGTAGAATCGGGAGTTGG
CGAGGCTAAATCGAGTGAGGTTGCTGGTGCAGTGTTTCAGAAACACGATG
ATTTTGAAGAGACAGCAAGAAAAGGGTTTGGTGTCTTATTCAAATTCTGC
CTGAAGAAGGAGACGGAGATGCGTGTACTGAAGCGCTTGAATCGGGAATG
GGTGGAAACTAGGAAAGAAGCGTTGACGAAATACAAACAACTTGCGCGAC
AATATGGATCACAACGCATCTCGGAGTTGGAGAAAATAGGGCGGATGCGA
ACGGCTCGCTTTCTATCTCATCAGGTGCACAAAATATACGTGCGAATGTT
TATTTTACAAAGATGCTGGAACAGAGAACAGCGCATGGGCGAAAATGAGA
TGAAGTCTCTGATGAGTTACTTGCATCGTGAAGGGTCGGCTGCGGACAAG
AACAAGTTCCTGACGCAGAGGAAGATTGGATCCATTGCAAATCTGTTGAA
CGACTATGCCAACATTCTCTGCCTGTTCGACACGTTGTTGTCTGACTGGA
CTGATGGGGATGATCAAGCTGGATCGGAGATTACAATGCCGTTTGTCGGT
GGAGAATGA
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