Gchil4383.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4383.t1
Unique NameGchil4383.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2399541..2400260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMA064CT
PFAMsCPP1-like
Max annot lvl2759|Eukaryota
Evalue2.99e-44
EggNOG OGs2E785@1|root,2SDV7@2759|Eukaryota
DescriptionPfam:DUF3353
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4383Gchil4383Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2399541..2400260 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4383.t1.start1Gchil4383.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2399541..2399543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4383.t1.CDS1Gchil4383.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2399541..2400260 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4383.t1.exon1Gchil4383.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2399541..2400260 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4383.t1.stop1Gchil4383.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2400258..2400260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4383.t1Gchil4383.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2399541..2400260 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4383.t1 ID=Gchil4383.t1|Name=Gchil4383.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=240bp
MLFGFGSKKKSAPNKSKSGTNPYRALGVGEDATYDEVEAAVKNLSVKYAD
DPKKLMMLDVCKDQIFEDKLQKRMSGALMPKIKESPYERKPQPKKRFVMP
VWAQGIFKLPDFAYFKRTGIIMGIFFALGFVTPTLAGSCMAMAFIAAAGF
LYNRGLPEPVRDDYGAYGEIRPVKHRIVLKTVLINLGVAAVFFGLAQLYM
LYLPLPVWSPPDAFVNAAVVFGLWMSCLLFMAQDPNDIY*
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spliced messenger RNA

>Gchil4383.t1 ID=Gchil4383.t1|Name=Gchil4383.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00004373_pilon:2399541..2400260+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTTTGGCTTCGGTAGTAAGAAAAAGAGCGCTCCAAACAAAAGTAA
GTCTGGCACAAATCCGTACCGTGCGCTTGGTGTCGGCGAGGATGCGACAT
ATGATGAAGTCGAAGCAGCTGTGAAAAATCTATCTGTAAAGTATGCAGAT
GATCCGAAGAAACTCATGATGCTCGATGTTTGTAAAGACCAAATCTTCGA
AGATAAGCTGCAAAAGCGCATGTCTGGAGCACTCATGCCGAAGATTAAAG
AGTCACCGTACGAGCGGAAGCCGCAACCGAAAAAGAGATTCGTCATGCCT
GTCTGGGCACAGGGTATTTTTAAGCTGCCAGACTTTGCCTACTTCAAACG
CACAGGGATCATAATGGGAATATTCTTTGCTCTTGGATTCGTCACCCCAA
CTCTAGCCGGTTCTTGCATGGCCATGGCCTTTATCGCAGCTGCTGGCTTC
TTGTATAACCGAGGCCTCCCCGAACCTGTGCGAGACGATTACGGTGCATA
CGGTGAGATTCGCCCAGTGAAGCATCGTATCGTGCTCAAGACCGTTTTGA
TCAACCTCGGGGTTGCCGCTGTATTTTTCGGATTGGCACAATTATACATG
CTGTACCTTCCACTTCCGGTGTGGTCACCACCAGATGCATTTGTTAATGC
CGCCGTGGTGTTTGGGTTATGGATGTCTTGTTTATTGTTCATGGCCCAAG
ATCCAAACGATATCTACTAG
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protein sequence of Gchil4383.t1

>Gchil4383.t1 ID=Gchil4383.t1|Name=Gchil4383.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=240bp
MLFGFGSKKKSAPNKSKSGTNPYRALGVGEDATYDEVEAAVKNLSVKYAD
DPKKLMMLDVCKDQIFEDKLQKRMSGALMPKIKESPYERKPQPKKRFVMP
VWAQGIFKLPDFAYFKRTGIIMGIFFALGFVTPTLAGSCMAMAFIAAAGF
LYNRGLPEPVRDDYGAYGEIRPVKHRIVLKTVLINLGVAAVFFGLAQLYM
LYLPLPVWSPPDAFVNAAVVFGLWMSCLLFMAQDPNDIY*
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mRNA from alignment at tig00004373_pilon:2399541..2400260+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4383.t1 ID=Gchil4383.t1|Name=Gchil4383.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00004373_pilon:2399541..2400260+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGTTTGGCTTCGGTAGTAAGAAAAAGAGCGCTCCAAACAAAAGTAA
GTCTGGCACAAATCCGTACCGTGCGCTTGGTGTCGGCGAGGATGCGACAT
ATGATGAAGTCGAAGCAGCTGTGAAAAATCTATCTGTAAAGTATGCAGAT
GATCCGAAGAAACTCATGATGCTCGATGTTTGTAAAGACCAAATCTTCGA
AGATAAGCTGCAAAAGCGCATGTCTGGAGCACTCATGCCGAAGATTAAAG
AGTCACCGTACGAGCGGAAGCCGCAACCGAAAAAGAGATTCGTCATGCCT
GTCTGGGCACAGGGTATTTTTAAGCTGCCAGACTTTGCCTACTTCAAACG
CACAGGGATCATAATGGGAATATTCTTTGCTCTTGGATTCGTCACCCCAA
CTCTAGCCGGTTCTTGCATGGCCATGGCCTTTATCGCAGCTGCTGGCTTC
TTGTATAACCGAGGCCTCCCCGAACCTGTGCGAGACGATTACGGTGCATA
CGGTGAGATTCGCCCAGTGAAGCATCGTATCGTGCTCAAGACCGTTTTGA
TCAACCTCGGGGTTGCCGCTGTATTTTTCGGATTGGCACAATTATACATG
CTGTACCTTCCACTTCCGGTGTGGTCACCACCAGATGCATTTGTTAATGC
CGCCGTGGTGTTTGGGTTATGGATGTCTTGTTTATTGTTCATGGCCCAAG
ATCCAAACGATATCTACTAG
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Coding sequence (CDS) from alignment at tig00004373_pilon:2399541..2400260+

>Gchil4383.t1 ID=Gchil4383.t1|Name=Gchil4383.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=720bp|location=Sequence derived from alignment at tig00004373_pilon:2399541..2400260+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGTTTGGCTTCGGTAGTAAGAAAAAGAGCGCTCCAAACAAAAGTAA
GTCTGGCACAAATCCGTACCGTGCGCTTGGTGTCGGCGAGGATGCGACAT
ATGATGAAGTCGAAGCAGCTGTGAAAAATCTATCTGTAAAGTATGCAGAT
GATCCGAAGAAACTCATGATGCTCGATGTTTGTAAAGACCAAATCTTCGA
AGATAAGCTGCAAAAGCGCATGTCTGGAGCACTCATGCCGAAGATTAAAG
AGTCACCGTACGAGCGGAAGCCGCAACCGAAAAAGAGATTCGTCATGCCT
GTCTGGGCACAGGGTATTTTTAAGCTGCCAGACTTTGCCTACTTCAAACG
CACAGGGATCATAATGGGAATATTCTTTGCTCTTGGATTCGTCACCCCAA
CTCTAGCCGGTTCTTGCATGGCCATGGCCTTTATCGCAGCTGCTGGCTTC
TTGTATAACCGAGGCCTCCCCGAACCTGTGCGAGACGATTACGGTGCATA
CGGTGAGATTCGCCCAGTGAAGCATCGTATCGTGCTCAAGACCGTTTTGA
TCAACCTCGGGGTTGCCGCTGTATTTTTCGGATTGGCACAATTATACATG
CTGTACCTTCCACTTCCGGTGTGGTCACCACCAGATGCATTTGTTAATGC
CGCCGTGGTGTTTGGGTTATGGATGTCTTGTTTATTGTTCATGGCCCAAG
ATCCAAACGATATCTACTAG
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