Gchil4382.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4382.t1
Unique NameGchil4382.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2395215..2396378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR475CT
PFAMsGFO_IDH_MocA,GFO_IDH_MocA_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00182
KEGG koko:K00010
KEGG ReactionR01183,R09951
KEGG Pathwayko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130
Evalue4.17e-148
EggNOG OGsCOG0673@1|root,KOG2741@2759|Eukaryota
EC1.1.1.18,1.1.1.369
DescriptionD-xylose 1-dehydrogenase (NADP ) activity
COG categoryV
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4382Gchil4382Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2395215..2396378 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4382.t1.start1Gchil4382.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2395215..2395217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4382.t1.CDS1Gchil4382.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2395215..2396378 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4382.t1.exon1Gchil4382.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2395215..2396378 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4382.t1.stop1Gchil4382.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2396376..2396378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4382.t1Gchil4382.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2395215..2396378 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4382.t1 ID=Gchil4382.t1|Name=Gchil4382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=388bp
MALAFVSASAPIGLSTTSFAGAPPKPHSSRPTRAATRRVLLRASAADAPV
GVAVIGCGRIGQVHARTISQLNSASLIAVADPFEKFGRKVAQDFSTEWTP
NWEHLLSNDDVNGIVIGSPTPFHAEQIIKSAEAGKDIFCEKPISNDLATI
DKCLAAVAANGVRLLVGFQRRFDSNFIKVREHVSSGAIGQLRMFHITSRD
PAPPPAEYLANSGGIFLDMTSHDWDMARFITGAEIESVYVTATAFEQAAK
EANDVDTVITVLKMSDGSFGTIDNSRRCSYGYDQRIEVFGSEGCINSNNR
APDTVVLSNQSGLAAGLPYSFFMDRYAEAYSGAMTAFVHMIKEGTPAPCT
GSDGRASIVAAMAAAKSHAEGRAVRLEECDLISNTVL*
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spliced messenger RNA

>Gchil4382.t1 ID=Gchil4382.t1|Name=Gchil4382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00004373_pilon:2395215..2396378+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTTGCCTTTGTAAGCGCATCGGCCCCCATTGGCTTGTCAACCAC
TTCCTTCGCTGGCGCCCCACCAAAGCCACATTCGTCTCGTCCCACACGTG
CGGCCACCCGGCGTGTGCTTCTGCGCGCTTCTGCTGCAGATGCACCCGTC
GGCGTTGCTGTCATCGGCTGTGGCCGAATTGGACAGGTGCATGCCAGAAC
AATATCGCAGTTGAACTCAGCCTCCCTCATCGCAGTCGCTGATCCGTTTG
AAAAGTTTGGTCGTAAGGTTGCCCAAGATTTCTCTACCGAGTGGACCCCC
AACTGGGAACACCTTCTGTCCAACGATGATGTTAACGGAATTGTGATCGG
TTCCCCAACCCCGTTTCACGCCGAGCAGATCATCAAGAGTGCCGAAGCAG
GCAAGGACATCTTTTGTGAAAAGCCCATTTCCAATGATCTTGCTACCATT
GACAAGTGCCTCGCTGCCGTGGCTGCCAACGGCGTTCGTTTGCTTGTCGG
CTTTCAACGCAGATTTGATTCCAATTTCATCAAAGTCAGGGAGCACGTAT
CCAGCGGTGCAATAGGACAGCTTCGTATGTTTCACATCACCTCCAGAGAT
CCTGCCCCACCACCTGCCGAGTATCTGGCCAATTCGGGCGGAATCTTTTT
GGACATGACTTCTCATGACTGGGATATGGCCAGATTTATCACCGGTGCCG
AGATTGAATCCGTTTATGTCACGGCCACCGCTTTTGAGCAAGCTGCTAAA
GAGGCCAATGACGTCGATACAGTCATCACCGTGTTGAAAATGTCTGATGG
CAGCTTTGGAACCATTGACAATTCCAGAAGATGTTCGTACGGTTATGATC
AACGCATCGAAGTATTTGGCAGCGAAGGCTGCATAAACAGCAACAACAGG
GCTCCTGACACCGTTGTTTTGAGTAATCAAAGTGGCCTTGCGGCTGGCTT
ACCATACTCTTTCTTCATGGATAGATACGCCGAGGCATATTCTGGCGCAA
TGACTGCGTTTGTGCACATGATTAAGGAAGGAACCCCTGCTCCTTGCACT
GGATCCGATGGGCGTGCGTCTATCGTCGCCGCTATGGCTGCTGCCAAGTC
TCATGCTGAAGGTCGTGCTGTGCGGCTTGAAGAGTGTGACTTGATTTCAA
ACACCGTTTTATGA
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protein sequence of Gchil4382.t1

>Gchil4382.t1 ID=Gchil4382.t1|Name=Gchil4382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=388bp
MALAFVSASAPIGLSTTSFAGAPPKPHSSRPTRAATRRVLLRASAADAPV
GVAVIGCGRIGQVHARTISQLNSASLIAVADPFEKFGRKVAQDFSTEWTP
NWEHLLSNDDVNGIVIGSPTPFHAEQIIKSAEAGKDIFCEKPISNDLATI
DKCLAAVAANGVRLLVGFQRRFDSNFIKVREHVSSGAIGQLRMFHITSRD
PAPPPAEYLANSGGIFLDMTSHDWDMARFITGAEIESVYVTATAFEQAAK
EANDVDTVITVLKMSDGSFGTIDNSRRCSYGYDQRIEVFGSEGCINSNNR
APDTVVLSNQSGLAAGLPYSFFMDRYAEAYSGAMTAFVHMIKEGTPAPCT
GSDGRASIVAAMAAAKSHAEGRAVRLEECDLISNTVL*
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mRNA from alignment at tig00004373_pilon:2395215..2396378+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4382.t1 ID=Gchil4382.t1|Name=Gchil4382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00004373_pilon:2395215..2396378+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTTGCCTTTGTAAGCGCATCGGCCCCCATTGGCTTGTCAACCAC
TTCCTTCGCTGGCGCCCCACCAAAGCCACATTCGTCTCGTCCCACACGTG
CGGCCACCCGGCGTGTGCTTCTGCGCGCTTCTGCTGCAGATGCACCCGTC
GGCGTTGCTGTCATCGGCTGTGGCCGAATTGGACAGGTGCATGCCAGAAC
AATATCGCAGTTGAACTCAGCCTCCCTCATCGCAGTCGCTGATCCGTTTG
AAAAGTTTGGTCGTAAGGTTGCCCAAGATTTCTCTACCGAGTGGACCCCC
AACTGGGAACACCTTCTGTCCAACGATGATGTTAACGGAATTGTGATCGG
TTCCCCAACCCCGTTTCACGCCGAGCAGATCATCAAGAGTGCCGAAGCAG
GCAAGGACATCTTTTGTGAAAAGCCCATTTCCAATGATCTTGCTACCATT
GACAAGTGCCTCGCTGCCGTGGCTGCCAACGGCGTTCGTTTGCTTGTCGG
CTTTCAACGCAGATTTGATTCCAATTTCATCAAAGTCAGGGAGCACGTAT
CCAGCGGTGCAATAGGACAGCTTCGTATGTTTCACATCACCTCCAGAGAT
CCTGCCCCACCACCTGCCGAGTATCTGGCCAATTCGGGCGGAATCTTTTT
GGACATGACTTCTCATGACTGGGATATGGCCAGATTTATCACCGGTGCCG
AGATTGAATCCGTTTATGTCACGGCCACCGCTTTTGAGCAAGCTGCTAAA
GAGGCCAATGACGTCGATACAGTCATCACCGTGTTGAAAATGTCTGATGG
CAGCTTTGGAACCATTGACAATTCCAGAAGATGTTCGTACGGTTATGATC
AACGCATCGAAGTATTTGGCAGCGAAGGCTGCATAAACAGCAACAACAGG
GCTCCTGACACCGTTGTTTTGAGTAATCAAAGTGGCCTTGCGGCTGGCTT
ACCATACTCTTTCTTCATGGATAGATACGCCGAGGCATATTCTGGCGCAA
TGACTGCGTTTGTGCACATGATTAAGGAAGGAACCCCTGCTCCTTGCACT
GGATCCGATGGGCGTGCGTCTATCGTCGCCGCTATGGCTGCTGCCAAGTC
TCATGCTGAAGGTCGTGCTGTGCGGCTTGAAGAGTGTGACTTGATTTCAA
ACACCGTTTTATGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:2395215..2396378+

>Gchil4382.t1 ID=Gchil4382.t1|Name=Gchil4382.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1164bp|location=Sequence derived from alignment at tig00004373_pilon:2395215..2396378+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTTGCCTTTGTAAGCGCATCGGCCCCCATTGGCTTGTCAACCAC
TTCCTTCGCTGGCGCCCCACCAAAGCCACATTCGTCTCGTCCCACACGTG
CGGCCACCCGGCGTGTGCTTCTGCGCGCTTCTGCTGCAGATGCACCCGTC
GGCGTTGCTGTCATCGGCTGTGGCCGAATTGGACAGGTGCATGCCAGAAC
AATATCGCAGTTGAACTCAGCCTCCCTCATCGCAGTCGCTGATCCGTTTG
AAAAGTTTGGTCGTAAGGTTGCCCAAGATTTCTCTACCGAGTGGACCCCC
AACTGGGAACACCTTCTGTCCAACGATGATGTTAACGGAATTGTGATCGG
TTCCCCAACCCCGTTTCACGCCGAGCAGATCATCAAGAGTGCCGAAGCAG
GCAAGGACATCTTTTGTGAAAAGCCCATTTCCAATGATCTTGCTACCATT
GACAAGTGCCTCGCTGCCGTGGCTGCCAACGGCGTTCGTTTGCTTGTCGG
CTTTCAACGCAGATTTGATTCCAATTTCATCAAAGTCAGGGAGCACGTAT
CCAGCGGTGCAATAGGACAGCTTCGTATGTTTCACATCACCTCCAGAGAT
CCTGCCCCACCACCTGCCGAGTATCTGGCCAATTCGGGCGGAATCTTTTT
GGACATGACTTCTCATGACTGGGATATGGCCAGATTTATCACCGGTGCCG
AGATTGAATCCGTTTATGTCACGGCCACCGCTTTTGAGCAAGCTGCTAAA
GAGGCCAATGACGTCGATACAGTCATCACCGTGTTGAAAATGTCTGATGG
CAGCTTTGGAACCATTGACAATTCCAGAAGATGTTCGTACGGTTATGATC
AACGCATCGAAGTATTTGGCAGCGAAGGCTGCATAAACAGCAACAACAGG
GCTCCTGACACCGTTGTTTTGAGTAATCAAAGTGGCCTTGCGGCTGGCTT
ACCATACTCTTTCTTCATGGATAGATACGCCGAGGCATATTCTGGCGCAA
TGACTGCGTTTGTGCACATGATTAAGGAAGGAACCCCTGCTCCTTGCACT
GGATCCGATGGGCGTGCGTCTATCGTCGCCGCTATGGCTGCTGCCAAGTC
TCATGCTGAAGGTCGTGCTGTGCGGCTTGAAGAGTGTGACTTGATTTCAA
ACACCGTTTTATGA
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