Gchil4381.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4381.t1
Unique Name	Gchil4381.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	708

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:2393015..2395138 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	946483.Cenrod_2391
Max annot lvl	28216\|Betaproteobacteria
Evalue	4.83e-32
EggNOG OGs	COG0438@1\|root,COG0438@2\|Bacteria,1RI6Q@1224\|Proteobacteria,2VZM1@28216\|Betaproteobacteria,4AGYE@80864\|Comamonadaceae
Description	transferase activity, transferring glycosyl groups
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4381	Gchil4381	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 2393015..2395138 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4381.t1.stop1	Gchil4381.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 2393015..2393017 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4381.t1.CDS1	Gchil4381.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 2393015..2395138 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4381.t1.exon1	Gchil4381.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 2393015..2395138 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4381.t1.start1	Gchil4381.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 2395136..2395138 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4381.t1	Gchil4381.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 2393015..2395138 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:2393015..2395138-
coding sequence from alignment at tig00004373_pilon:2393015..2395138-

mRNA sequence

>Gchil4381.t1 ID=Gchil4381.t1|Name=Gchil4381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=708bp
MGSAELAGSTARGLALFPRIASATWRRRGDREHNQSLVNSDVHPKRLQTE
TRRVQPATRSLAMTDDGLRARARDRCAGATRFDARGGSYAARAAKRRRRA
CCRPAALSLLLALLALTVGSVFVLRLRATRATAAVSTVASPPSPSPSPSP
SPSPPLPLRYDFFVTIYSYDRPRQLLCLLLDLRREAQRASVVLGVNVIDD
NSLSCVFHPSHRNVFQPHPPSSLSQPLHHLQLNRSAPCTARHRFRHVESF
LANNSWNLYVSHYRHARRRYWHLVRMAHALLHPISSSFYIFLPDDDRLAT
NFFQRVSRAWHSINHQRKLTLMLHVEQSRENVAVWTAFKPRNIGADITRI
GWVESGNFMCTQHFLRFLNWSFPPIGVERWIRNPPISSGVGATLSELIHS
AAYRMYQTRQSFVAHIGVTLSKMNAQFRDSNAPALLTKYFADGNQVYRQH
LTDAATVTASIASVWTRETALHSAVHSLSPQVDRLNVYLNGYDSVPSYLY
APYITVMRSQHNSSRGDIGDIGKFFWCNHIQTDFHLTADDDIIYPPDYVK
SLLQFWHSFSSPVVVGVHGIRIIQEHLTPSKGEKSKGYYGSRRVFMAVEK
VRQPKNVHIIGTGTMMYRPQDVGHIDIDSTFQEPNMADVWFGLLVQKLHM
PMMIIPHEEGWIKEVPGTFEDSIYKRSTRSRTSDRLQTRAAKSIGMWKLY
PPLSNAT*

spliced messenger RNA

>Gchil4381.t1 ID=Gchil4381.t1|Name=Gchil4381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2124bp|location=Sequence derived from alignment at tig00004373_pilon:2393015..2395138- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGCGCTGAGCTCGCGGGCAGCACCGCTCGCGGATTAGCCCTCTT
TCCAAGGATAGCGAGCGCCACGTGGCGCCGACGCGGCGACAGAGAGCACA
ACCAATCATTGGTGAACAGTGACGTGCACCCAAAAAGACTGCAGACCGAA
ACGCGCCGCGTACAGCCTGCGACGCGGTCGTTGGCCATGACAGACGACGG
ACTGCGCGCGCGCGCGCGCGACCGCTGTGCAGGTGCGACGCGCTTCGATG
CGCGTGGCGGCTCATACGCTGCACGCGCTGCCAAACGGCGACGTCGCGCT
TGCTGTCGTCCCGCCGCGCTTTCTTTGCTGCTGGCGCTGCTGGCCTTGAC
TGTTGGTAGTGTGTTTGTGCTTCGCTTGCGCGCGACTCGCGCTACCGCCG
CCGTTTCTACCGTCGCTTCCCCGCCGTCGCCGTCACCGTCGCCGTCGCCG
TCGCCGTCGCCGCCGCTGCCGCTTCGCTATGACTTCTTCGTCACCATCTA
CTCGTATGACCGCCCGCGCCAGCTCTTGTGCCTGCTTCTCGACCTGAGGC
GCGAGGCTCAGCGCGCGTCCGTTGTACTTGGCGTCAATGTCATCGATGAT
AACTCTCTGTCGTGCGTGTTTCACCCGTCGCATCGCAACGTCTTTCAACC
CCACCCGCCTTCCTCGCTCTCACAACCCTTGCACCATCTTCAACTCAATC
GCTCCGCGCCCTGCACCGCCCGCCACCGCTTCCGCCACGTCGAGAGCTTT
CTAGCCAACAATTCGTGGAACTTGTATGTGTCCCACTATCGTCATGCGCG
TCGTCGATACTGGCATCTTGTTCGCATGGCCCATGCGTTGTTGCACCCCA
TATCCTCCTCCTTCTACATCTTTCTTCCTGACGACGATCGTCTTGCCACC
AATTTCTTCCAAAGGGTGTCGCGTGCTTGGCACTCCATTAACCATCAGCG
CAAGCTCACACTCATGCTTCACGTCGAGCAGTCACGCGAGAATGTTGCGG
TGTGGACTGCCTTCAAACCGCGCAACATTGGTGCCGATATCACTCGAATC
GGCTGGGTTGAATCGGGTAACTTTATGTGCACTCAACATTTTTTGCGCTT
CTTAAACTGGTCCTTCCCGCCGATTGGCGTCGAGCGATGGATAAGGAACC
CACCCATTTCATCAGGCGTTGGTGCCACTCTATCCGAACTTATTCACTCC
GCTGCATACCGAATGTATCAAACACGCCAATCATTTGTCGCTCACATTGG
CGTCACGCTATCCAAGATGAACGCTCAATTTAGGGATAGCAACGCCCCGG
CTCTGCTTACCAAGTATTTTGCAGATGGTAATCAAGTCTACCGCCAGCAT
TTGACCGACGCTGCCACCGTCACCGCATCCATAGCGTCAGTATGGACTCG
CGAAACAGCGCTTCATTCAGCCGTACATTCGTTGTCCCCTCAAGTAGATC
GACTCAACGTGTACCTTAATGGTTACGACTCAGTTCCATCTTACCTCTAC
GCGCCGTACATTACCGTCATGCGCAGTCAACACAACTCTTCGCGAGGCGA
TATCGGGGACATTGGAAAGTTCTTCTGGTGCAATCACATCCAAACTGACT
TCCATCTCACGGCTGATGACGACATCATTTATCCACCCGATTATGTTAAA
TCGCTCCTACAATTTTGGCACTCCTTTTCTTCGCCCGTGGTCGTCGGTGT
GCACGGCATTCGCATTATACAAGAACATCTTACTCCGTCGAAGGGCGAGA
AAAGCAAGGGATACTATGGCTCCCGTCGCGTTTTCATGGCCGTCGAAAAA
GTTCGCCAACCAAAAAACGTCCACATCATTGGCACGGGCACCATGATGTA
CCGTCCTCAAGATGTTGGTCATATCGACATCGACAGTACCTTCCAAGAGC
CGAACATGGCCGACGTTTGGTTCGGCCTTTTGGTGCAAAAGCTACACATG
CCAATGATGATAATCCCGCACGAAGAAGGCTGGATCAAAGAAGTGCCTGG
AACCTTCGAAGATTCCATTTACAAGCGTTCTACGAGAAGCAGAACATCAG
ACAGACTACAAACCCGTGCTGCGAAAAGCATCGGAATGTGGAAGCTGTAT
CCTCCTTTGTCGAACGCGACATAG

protein sequence of Gchil4381.t1

>Gchil4381.t1 ID=Gchil4381.t1|Name=Gchil4381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=708bp
MGSAELAGSTARGLALFPRIASATWRRRGDREHNQSLVNSDVHPKRLQTE
TRRVQPATRSLAMTDDGLRARARDRCAGATRFDARGGSYAARAAKRRRRA
CCRPAALSLLLALLALTVGSVFVLRLRATRATAAVSTVASPPSPSPSPSP
SPSPPLPLRYDFFVTIYSYDRPRQLLCLLLDLRREAQRASVVLGVNVIDD
NSLSCVFHPSHRNVFQPHPPSSLSQPLHHLQLNRSAPCTARHRFRHVESF
LANNSWNLYVSHYRHARRRYWHLVRMAHALLHPISSSFYIFLPDDDRLAT
NFFQRVSRAWHSINHQRKLTLMLHVEQSRENVAVWTAFKPRNIGADITRI
GWVESGNFMCTQHFLRFLNWSFPPIGVERWIRNPPISSGVGATLSELIHS
AAYRMYQTRQSFVAHIGVTLSKMNAQFRDSNAPALLTKYFADGNQVYRQH
LTDAATVTASIASVWTRETALHSAVHSLSPQVDRLNVYLNGYDSVPSYLY
APYITVMRSQHNSSRGDIGDIGKFFWCNHIQTDFHLTADDDIIYPPDYVK
SLLQFWHSFSSPVVVGVHGIRIIQEHLTPSKGEKSKGYYGSRRVFMAVEK
VRQPKNVHIIGTGTMMYRPQDVGHIDIDSTFQEPNMADVWFGLLVQKLHM
PMMIIPHEEGWIKEVPGTFEDSIYKRSTRSRTSDRLQTRAAKSIGMWKLY
PPLSNAT*

mRNA from alignment at tig00004373_pilon:2393015..2395138-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4381.t1 ID=Gchil4381.t1|Name=Gchil4381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2124bp|location=Sequence derived from alignment at tig00004373_pilon:2393015..2395138- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCAGCGCTGAGCTCGCGGGCAGCACCGCTCGCGGATTAGCCCTCTT
TCCAAGGATAGCGAGCGCCACGTGGCGCCGACGCGGCGACAGAGAGCACA
ACCAATCATTGGTGAACAGTGACGTGCACCCAAAAAGACTGCAGACCGAA
ACGCGCCGCGTACAGCCTGCGACGCGGTCGTTGGCCATGACAGACGACGG
ACTGCGCGCGCGCGCGCGCGACCGCTGTGCAGGTGCGACGCGCTTCGATG
CGCGTGGCGGCTCATACGCTGCACGCGCTGCCAAACGGCGACGTCGCGCT
TGCTGTCGTCCCGCCGCGCTTTCTTTGCTGCTGGCGCTGCTGGCCTTGAC
TGTTGGTAGTGTGTTTGTGCTTCGCTTGCGCGCGACTCGCGCTACCGCCG
CCGTTTCTACCGTCGCTTCCCCGCCGTCGCCGTCACCGTCGCCGTCGCCG
TCGCCGTCGCCGCCGCTGCCGCTTCGCTATGACTTCTTCGTCACCATCTA
CTCGTATGACCGCCCGCGCCAGCTCTTGTGCCTGCTTCTCGACCTGAGGC
GCGAGGCTCAGCGCGCGTCCGTTGTACTTGGCGTCAATGTCATCGATGAT
AACTCTCTGTCGTGCGTGTTTCACCCGTCGCATCGCAACGTCTTTCAACC
CCACCCGCCTTCCTCGCTCTCACAACCCTTGCACCATCTTCAACTCAATC
GCTCCGCGCCCTGCACCGCCCGCCACCGCTTCCGCCACGTCGAGAGCTTT
CTAGCCAACAATTCGTGGAACTTGTATGTGTCCCACTATCGTCATGCGCG
TCGTCGATACTGGCATCTTGTTCGCATGGCCCATGCGTTGTTGCACCCCA
TATCCTCCTCCTTCTACATCTTTCTTCCTGACGACGATCGTCTTGCCACC
AATTTCTTCCAAAGGGTGTCGCGTGCTTGGCACTCCATTAACCATCAGCG
CAAGCTCACACTCATGCTTCACGTCGAGCAGTCACGCGAGAATGTTGCGG
TGTGGACTGCCTTCAAACCGCGCAACATTGGTGCCGATATCACTCGAATC
GGCTGGGTTGAATCGGGTAACTTTATGTGCACTCAACATTTTTTGCGCTT
CTTAAACTGGTCCTTCCCGCCGATTGGCGTCGAGCGATGGATAAGGAACC
CACCCATTTCATCAGGCGTTGGTGCCACTCTATCCGAACTTATTCACTCC
GCTGCATACCGAATGTATCAAACACGCCAATCATTTGTCGCTCACATTGG
CGTCACGCTATCCAAGATGAACGCTCAATTTAGGGATAGCAACGCCCCGG
CTCTGCTTACCAAGTATTTTGCAGATGGTAATCAAGTCTACCGCCAGCAT
TTGACCGACGCTGCCACCGTCACCGCATCCATAGCGTCAGTATGGACTCG
CGAAACAGCGCTTCATTCAGCCGTACATTCGTTGTCCCCTCAAGTAGATC
GACTCAACGTGTACCTTAATGGTTACGACTCAGTTCCATCTTACCTCTAC
GCGCCGTACATTACCGTCATGCGCAGTCAACACAACTCTTCGCGAGGCGA
TATCGGGGACATTGGAAAGTTCTTCTGGTGCAATCACATCCAAACTGACT
TCCATCTCACGGCTGATGACGACATCATTTATCCACCCGATTATGTTAAA
TCGCTCCTACAATTTTGGCACTCCTTTTCTTCGCCCGTGGTCGTCGGTGT
GCACGGCATTCGCATTATACAAGAACATCTTACTCCGTCGAAGGGCGAGA
AAAGCAAGGGATACTATGGCTCCCGTCGCGTTTTCATGGCCGTCGAAAAA
GTTCGCCAACCAAAAAACGTCCACATCATTGGCACGGGCACCATGATGTA
CCGTCCTCAAGATGTTGGTCATATCGACATCGACAGTACCTTCCAAGAGC
CGAACATGGCCGACGTTTGGTTCGGCCTTTTGGTGCAAAAGCTACACATG
CCAATGATGATAATCCCGCACGAAGAAGGCTGGATCAAAGAAGTGCCTGG
AACCTTCGAAGATTCCATTTACAAGCGTTCTACGAGAAGCAGAACATCAG
ACAGACTACAAACCCGTGCTGCGAAAAGCATCGGAATGTGGAAGCTGTAT
CCTCCTTTGTCGAACGCGACATAG

Coding sequence (CDS) from alignment at tig00004373_pilon:2393015..2395138-

>Gchil4381.t1 ID=Gchil4381.t1|Name=Gchil4381.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2124bp|location=Sequence derived from alignment at tig00004373_pilon:2393015..2395138- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCAGCGCTGAGCTCGCGGGCAGCACCGCTCGCGGATTAGCCCTCTT
TCCAAGGATAGCGAGCGCCACGTGGCGCCGACGCGGCGACAGAGAGCACA
ACCAATCATTGGTGAACAGTGACGTGCACCCAAAAAGACTGCAGACCGAA
ACGCGCCGCGTACAGCCTGCGACGCGGTCGTTGGCCATGACAGACGACGG
ACTGCGCGCGCGCGCGCGCGACCGCTGTGCAGGTGCGACGCGCTTCGATG
CGCGTGGCGGCTCATACGCTGCACGCGCTGCCAAACGGCGACGTCGCGCT
TGCTGTCGTCCCGCCGCGCTTTCTTTGCTGCTGGCGCTGCTGGCCTTGAC
TGTTGGTAGTGTGTTTGTGCTTCGCTTGCGCGCGACTCGCGCTACCGCCG
CCGTTTCTACCGTCGCTTCCCCGCCGTCGCCGTCACCGTCGCCGTCGCCG
TCGCCGTCGCCGCCGCTGCCGCTTCGCTATGACTTCTTCGTCACCATCTA
CTCGTATGACCGCCCGCGCCAGCTCTTGTGCCTGCTTCTCGACCTGAGGC
GCGAGGCTCAGCGCGCGTCCGTTGTACTTGGCGTCAATGTCATCGATGAT
AACTCTCTGTCGTGCGTGTTTCACCCGTCGCATCGCAACGTCTTTCAACC
CCACCCGCCTTCCTCGCTCTCACAACCCTTGCACCATCTTCAACTCAATC
GCTCCGCGCCCTGCACCGCCCGCCACCGCTTCCGCCACGTCGAGAGCTTT
CTAGCCAACAATTCGTGGAACTTGTATGTGTCCCACTATCGTCATGCGCG
TCGTCGATACTGGCATCTTGTTCGCATGGCCCATGCGTTGTTGCACCCCA
TATCCTCCTCCTTCTACATCTTTCTTCCTGACGACGATCGTCTTGCCACC
AATTTCTTCCAAAGGGTGTCGCGTGCTTGGCACTCCATTAACCATCAGCG
CAAGCTCACACTCATGCTTCACGTCGAGCAGTCACGCGAGAATGTTGCGG
TGTGGACTGCCTTCAAACCGCGCAACATTGGTGCCGATATCACTCGAATC
GGCTGGGTTGAATCGGGTAACTTTATGTGCACTCAACATTTTTTGCGCTT
CTTAAACTGGTCCTTCCCGCCGATTGGCGTCGAGCGATGGATAAGGAACC
CACCCATTTCATCAGGCGTTGGTGCCACTCTATCCGAACTTATTCACTCC
GCTGCATACCGAATGTATCAAACACGCCAATCATTTGTCGCTCACATTGG
CGTCACGCTATCCAAGATGAACGCTCAATTTAGGGATAGCAACGCCCCGG
CTCTGCTTACCAAGTATTTTGCAGATGGTAATCAAGTCTACCGCCAGCAT
TTGACCGACGCTGCCACCGTCACCGCATCCATAGCGTCAGTATGGACTCG
CGAAACAGCGCTTCATTCAGCCGTACATTCGTTGTCCCCTCAAGTAGATC
GACTCAACGTGTACCTTAATGGTTACGACTCAGTTCCATCTTACCTCTAC
GCGCCGTACATTACCGTCATGCGCAGTCAACACAACTCTTCGCGAGGCGA
TATCGGGGACATTGGAAAGTTCTTCTGGTGCAATCACATCCAAACTGACT
TCCATCTCACGGCTGATGACGACATCATTTATCCACCCGATTATGTTAAA
TCGCTCCTACAATTTTGGCACTCCTTTTCTTCGCCCGTGGTCGTCGGTGT
GCACGGCATTCGCATTATACAAGAACATCTTACTCCGTCGAAGGGCGAGA
AAAGCAAGGGATACTATGGCTCCCGTCGCGTTTTCATGGCCGTCGAAAAA
GTTCGCCAACCAAAAAACGTCCACATCATTGGCACGGGCACCATGATGTA
CCGTCCTCAAGATGTTGGTCATATCGACATCGACAGTACCTTCCAAGAGC
CGAACATGGCCGACGTTTGGTTCGGCCTTTTGGTGCAAAAGCTACACATG
CCAATGATGATAATCCCGCACGAAGAAGGCTGGATCAAAGAAGTGCCTGG
AACCTTCGAAGATTCCATTTACAAGCGTTCTACGAGAAGCAGAACATCAG
ACAGACTACAAACCCGTGCTGCGAAAAGCATCGGAATGTGGAAGCTGTAT
CCTCCTTTGTCGAACGCGACATAG