Gchil4380.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4380.t1
Unique NameGchil4380.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length158
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2391043..2391647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4380Gchil4380Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2391043..2391647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4380.t1Gchil4380.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2391043..2391647 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4380.t1.stop1Gchil4380.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2391043..2391045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4380.t1.CDS1Gchil4380.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2391043..2391212 -
Gchil4380.t1.CDS2Gchil4380.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2391344..2391647 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4380.t1.exon1Gchil4380.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2391043..2391212 -
Gchil4380.t1.exon2Gchil4380.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2391344..2391647 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4380.t1.intron1Gchil4380.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 2391213..2391343 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4380.t1.start1Gchil4380.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2391645..2391647 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4380.t1 ID=Gchil4380.t1|Name=Gchil4380.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=158bp
MKGSIFILLCAALLCYSALASVVIEKKGNGLSKSESNGLKKTKADLLPST
RTGNHGHGRGGGGGYYNGRRRGGPGFGFARGPAPFVPVPVSYGYGYYPYG
VGPCPTPGSAAAAFGAATAAVLPTICSEAGACAGAPPDSRPSSEEEEEEV
PQRQWQR*
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spliced messenger RNA

>Gchil4380.t1 ID=Gchil4380.t1|Name=Gchil4380.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=474bp|location=Sequence derived from alignment at tig00004373_pilon:2391043..2391647- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGGCTCCATTTTTATTCTTCTGTGCGCAGCTTTGTTGTGTTACTC
TGCACTGGCCAGCGTTGTCATCGAGAAGAAGGGAAACGGTTTGTCAAAGT
CGGAGTCGAATGGATTGAAGAAGACGAAGGCCGATCTACTGCCTAGTACT
CGCACTGGTAACCACGGGCATGGTCGAGGCGGCGGCGGCGGCTATTATAA
TGGTCGTCGTCGTGGTGGACCAGGTTTCGGTTTCGCTCGTGGTCCTGCTC
CGTTCGTACCGGTGCCAGTGTCCTACGGATACGGGTATTACCCATACGGC
GTTGGTCCCTGCCCCACGCCCGGTTCTGCCGCCGCAGCCTTTGGCGCCGC
AACCGCAGCCGTTCTTCCCACGATTTGTTCCGAGGCCGGTGCTTGTGCCG
GAGCGCCGCCCGACAGTCGTCCAAGCTCCGAGGAGGAGGAGGAGGAGGTG
CCGCAGAGGCAGTGGCAGCGATAG
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protein sequence of Gchil4380.t1

>Gchil4380.t1 ID=Gchil4380.t1|Name=Gchil4380.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=158bp
MKGSIFILLCAALLCYSALASVVIEKKGNGLSKSESNGLKKTKADLLPST
RTGNHGHGRGGGGGYYNGRRRGGPGFGFARGPAPFVPVPVSYGYGYYPYG
VGPCPTPGSAAAAFGAATAAVLPTICSEAGACAGAPPDSRPSSEEEEEEV
PQRQWQR*
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mRNA from alignment at tig00004373_pilon:2391043..2391647-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4380.t1 ID=Gchil4380.t1|Name=Gchil4380.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=605bp|location=Sequence derived from alignment at tig00004373_pilon:2391043..2391647- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGGCTCCATTTTTATTCTTCTGTGCGCAGCTTTGTTGTGTTACTC
TGCACTGGCCAGCGTTGTCATCGAGAAGAAGGGAAACGGTTTGTCAAAGT
CGGAGTCGAATGGATTGAAGAAGACGAAGGCCGATCTACTGCCTAGTACT
CGCACTGGTAACCACGGGCATGGTCGAGGCGGCGGCGGCGGCTATTATAA
TGGTCGTCGTCGTGGTGGACCAGGTTTCGGTTTCGCTCGTGGTCCTGCTC
CGTTCGTACCGGTGCCAGTGTCCTACGGATACGGGTATTACCCATACGGC
GTTGGTCAGTTCCCGGGTGCTGTGCCGTTCGCTCCGCTTCCTGTACCAGT
CGCACCGCGCCCCGCTCCGCCAGCACCGCGCCCGAGGCCGCCCGCGCCGC
GCCCTGCACCAGTTGCCCCTCGTCCGTTACCTCAGGTCCCTGCCCCACGC
CCGGTTCTGCCGCCGCAGCCTTTGGCGCCGCAACCGCAGCCGTTCTTCCC
ACGATTTGTTCCGAGGCCGGTGCTTGTGCCGGAGCGCCGCCCGACAGTCG
TCCAAGCTCCGAGGAGGAGGAGGAGGAGGTGCCGCAGAGGCAGTGGCAGC
GATAG
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Coding sequence (CDS) from alignment at tig00004373_pilon:2391043..2391647-

>Gchil4380.t1 ID=Gchil4380.t1|Name=Gchil4380.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=474bp|location=Sequence derived from alignment at tig00004373_pilon:2391043..2391647- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGGCTCCATTTTTATTCTTCTGTGCGCAGCTTTGTTGTGTTACTC
TGCACTGGCCAGCGTTGTCATCGAGAAGAAGGGAAACGGTTTGTCAAAGT
CGGAGTCGAATGGATTGAAGAAGACGAAGGCCGATCTACTGCCTAGTACT
CGCACTGGTAACCACGGGCATGGTCGAGGCGGCGGCGGCGGCTATTATAA
TGGTCGTCGTCGTGGTGGACCAGGTTTCGGTTTCGCTCGTGGTCCTGCTC
CGTTCGTACCGGTGCCAGTGTCCTACGGATACGGGTATTACCCATACGGC
GTTGGTCCCTGCCCCACGCCCGGTTCTGCCGCCGCAGCCTTTGGCGCCGC
AACCGCAGCCGTTCTTCCCACGATTTGTTCCGAGGCCGGTGCTTGTGCCG
GAGCGCCGCCCGACAGTCGTCCAAGCTCCGAGGAGGAGGAGGAGGAGGTG
CCGCAGAGGCAGTGGCAGCGATAG
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