Gchil4377.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4377.t1
Unique NameGchil4377.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length154
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2383370..2383924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7159.AAEL007640-PA
Preferred nameMOCS2
PFAMsMoaE
Max annot lvl33208|Metazoa
KEGG rclassRC02507
KEGG koko:K03635,ko:K21232
KEGG ReactionR09395
KEGG Pathwayko00790,ko01100,ko04122,map00790,map01100,map04122
GOsGO:0000123,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006325,GO:0006338,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016782,GO:0016783,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019008,GO:0019538,GO:0019637,GO:0019693,GO:0019720,GO:0030366,GO:0031248,GO:0031974,GO:0031981,GO:0032324,GO:0032991,GO:0034641,GO:0036211,GO:0042278,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0051276,GO:0055086,GO:0070013,GO:0071704,GO:0071840,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1902493,GO:1902494,GO:1902562,GO:1990234
Evalue8.94e-54
EggNOG OGsCOG0314@1|root,KOG3307@2759|Eukaryota,3A4C5@33154|Opisthokonta,3BREV@33208|Metazoa,3D893@33213|Bilateria,41TQY@6656|Arthropoda,3SJ5Q@50557|Insecta,453YV@7147|Diptera,45HWT@7148|Nematocera
EC2.8.1.12
DescriptionCatalytic subunit of the molybdopterin synthase complex, a complex that catalyzes the conversion of precursor Z into molybdopterin. Acts by mediating the incorporation of 2 sulfur atoms from thiocarboxylated MOCS2A into precursor Z to generate a dithiolene group
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4377Gchil4377Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2383370..2383924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4377.t1Gchil4377.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2383370..2383924 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4377.t1.stop1Gchil4377.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2383370..2383372 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4377.t1.CDS1Gchil4377.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2383370..2383497 -
Gchil4377.t1.CDS2Gchil4377.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2383591..2383924 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4377.t1.exon1Gchil4377.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2383370..2383497 -
Gchil4377.t1.exon2Gchil4377.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2383591..2383924 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4377.t1.intron1Gchil4377.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 2383498..2383590 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4377.t1.start1Gchil4377.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2383922..2383924 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4377.t1 ID=Gchil4377.t1|Name=Gchil4377.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=154bp
MCQPHGDTVVLTEELLSVESAMNAVSSDSAGAVSLFVGTTRDNFDGKTVL
RLEYEAYRPMAVKEMNALCDAARSQWPQITSVAVMHRLGVVPVREASVII
AVSSPHRKDAIEACHSLIDELKARVPIWKKEVYEDGSEWKANKECMRVTS
SSH*
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spliced messenger RNA

>Gchil4377.t1 ID=Gchil4377.t1|Name=Gchil4377.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=462bp|location=Sequence derived from alignment at tig00004373_pilon:2383370..2383924- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCAGCCACACGGTGATACCGTCGTGCTCACCGAAGAATTGCTAAG
CGTTGAATCTGCGATGAATGCCGTATCATCTGACTCTGCAGGTGCGGTTT
CACTGTTTGTAGGAACTACGAGAGATAACTTCGACGGAAAGACTGTGTTG
CGCTTGGAGTACGAGGCTTACAGGCCAATGGCCGTCAAGGAAATGAATGC
TTTGTGTGACGCTGCACGATCCCAGTGGCCGCAGATCACTTCTGTGGCAG
TTATGCACCGCTTAGGCGTAGTCCCAGTGCGCGAGGCTTCTGTGATCATT
GCTGTTTCCTCTCCGCATCGAAAAGATGCAATCGAGGCGTGTCACTCGCT
CATAGACGAATTGAAAGCTCGGGTTCCGATATGGAAGAAAGAGGTATATG
AAGATGGCTCAGAGTGGAAAGCAAACAAAGAATGCATGCGTGTGACATCA
TCATCGCACTAA
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protein sequence of Gchil4377.t1

>Gchil4377.t1 ID=Gchil4377.t1|Name=Gchil4377.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=154bp
MCQPHGDTVVLTEELLSVESAMNAVSSDSAGAVSLFVGTTRDNFDGKTVL
RLEYEAYRPMAVKEMNALCDAARSQWPQITSVAVMHRLGVVPVREASVII
AVSSPHRKDAIEACHSLIDELKARVPIWKKEVYEDGSEWKANKECMRVTS
SSH*
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mRNA from alignment at tig00004373_pilon:2383370..2383924-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4377.t1 ID=Gchil4377.t1|Name=Gchil4377.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00004373_pilon:2383370..2383924- (Gracilaria chilensis NLEC103_M9 male)
ATGTGCCAGCCACACGGTGATACCGTCGTGCTCACCGAAGAATTGCTAAG
CGTTGAATCTGCGATGAATGCCGTATCATCTGACTCTGCAGGTGCGGTTT
CACTGTTTGTAGGAACTACGAGAGATAACTTCGACGGAAAGACTGTGTTG
CGCTTGGAGTACGAGGCTTACAGGCCAATGGCCGTCAAGGAAATGAATGC
TTTGTGTGACGCTGCACGATCCCAGTGGCCGCAGATCACTTCTGTGGCAG
TTATGCACCGCTTAGGCGTAGTCCCAGTGCGCGAGGCTTCTGTGATCATT
GCTGTTTCCTCTCCGCATCGAAAAGATGCAATCGGTAAGTTTGAATAACC
CCCCCCCTCGCTTGAACGACGTTGTCCTTAGCACCAACCACGACTGACAC
TGTTTGACGTGCTCGAACGGCACACAGAGGCGTGTCACTCGCTCATAGAC
GAATTGAAAGCTCGGGTTCCGATATGGAAGAAAGAGGTATATGAAGATGG
CTCAGAGTGGAAAGCAAACAAAGAATGCATGCGTGTGACATCATCATCGC
ACTAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:2383370..2383924-

>Gchil4377.t1 ID=Gchil4377.t1|Name=Gchil4377.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=462bp|location=Sequence derived from alignment at tig00004373_pilon:2383370..2383924- (Gracilaria chilensis NLEC103_M9 male)
ATGTGCCAGCCACACGGTGATACCGTCGTGCTCACCGAAGAATTGCTAAG
CGTTGAATCTGCGATGAATGCCGTATCATCTGACTCTGCAGGTGCGGTTT
CACTGTTTGTAGGAACTACGAGAGATAACTTCGACGGAAAGACTGTGTTG
CGCTTGGAGTACGAGGCTTACAGGCCAATGGCCGTCAAGGAAATGAATGC
TTTGTGTGACGCTGCACGATCCCAGTGGCCGCAGATCACTTCTGTGGCAG
TTATGCACCGCTTAGGCGTAGTCCCAGTGCGCGAGGCTTCTGTGATCATT
GCTGTTTCCTCTCCGCATCGAAAAGATGCAATCGAGGCGTGTCACTCGCT
CATAGACGAATTGAAAGCTCGGGTTCCGATATGGAAGAAAGAGGTATATG
AAGATGGCTCAGAGTGGAAAGCAAACAAAGAATGCATGCGTGTGACATCA
TCATCGCACTAA
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