Gchil4373.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4373.t1
Unique Name	Gchil4373.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	707

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:2373569..2375689 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708507.1
PFAMs	Nucleotid_trans
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K20892
Evalue	2.1e-311
EggNOG OGs	2CMQE@1\|root,2QRDX@2759\|Eukaryota
Description	transferase activity, transferring glycosyl groups
COG category	S
CAZy	GT77
BRITE	ko00000,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4373	Gchil4373	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 2373569..2375689 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4373.t1.stop1	Gchil4373.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 2373569..2373571 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4373.t1.CDS1	Gchil4373.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 2373569..2375689 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4373.t1.exon1	Gchil4373.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 2373569..2375689 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4373.t1.start1	Gchil4373.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 2375687..2375689 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4373.t1	Gchil4373.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 2373569..2375689 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:2373569..2375689-
coding sequence from alignment at tig00004373_pilon:2373569..2375689-

mRNA sequence

>Gchil4373.t1 ID=Gchil4373.t1|Name=Gchil4373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=707bp
MRRDRDREYRRGNKSSSKHSNNISSWLFFWSAALLLISFIQLRNPQANSF
YRGTLRLPEHAEGEQVGDFSDRISDLSIEIFSAPKPFIGDDKPGNERAIR
SWLRLNPTPRITLLGYETGYEEAAEEFGLHIERRVDKNFLGVPLFNSMFQ
RANDSKAMVTVIINGDILLFDDFVQTVKKVISNFEHFLVVAARYDVDKLP
DNLEDTDPEYVRKIRQHVLSTGTLHTYGGMDVWAWNTQGPRLFDPVMPHF
IFGRGKYDNWLTHETIAAGRRQVVDASETCLTVHVRHDYHLVTGGGDSKA
GGKRRLLGAFWSEGKKSKFELFINIYLSLHVGSYTNQMGNVLFAPWKLSL
CMEPMGMCLLKRKRPGICNCEFSSFVSNTQTDPVVKNGSRVIRCGMISVE
TKENFVIPVLVPEGSTEAPAFGLPLTMKSVIEKVVVNNTVILSALNYGYR
GIMMNWVCNMRHLGITNFVIAALDADLYKFAYTRGLPTYLENTIFQGLNS
SIISDATYGSDSFKQLTKMKSRVVVRILKEGFNVMWTDSDIIYFRNPLQD
MWAYHADLSIQTNAPDNEPMNGRRRLNSGFYLARSNPATIQAFEDIILFA
SKSRMSEQPCFYDVMCGKEGQRAEGGDTCKYNGMIVKLLNRHLYPNGITD
GIWDTTPGKIPEKFPHLFILHNNWVKGADGKRDRFERHGFILYDRESELC
VYPETW*

spliced messenger RNA

>Gchil4373.t1 ID=Gchil4373.t1|Name=Gchil4373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2121bp|location=Sequence derived from alignment at tig00004373_pilon:2373569..2375689- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTAGGGATCGTGACCGCGAGTACAGGAGAGGCAACAAAAGCTCGTC
GAAACACAGCAACAACATTTCGTCATGGCTATTCTTCTGGTCTGCAGCCC
TCCTGTTGATAAGTTTTATCCAACTTCGGAATCCCCAGGCAAATTCGTTC
TATCGGGGTACCCTCAGACTGCCTGAGCATGCGGAGGGTGAACAGGTTGG
TGATTTCAGTGACAGAATCAGCGATCTTTCGATAGAGATTTTTTCAGCGC
CCAAGCCCTTTATTGGAGATGATAAGCCAGGCAACGAAAGAGCAATACGA
TCATGGCTGCGCCTCAATCCTACCCCGAGGATTACATTGTTAGGATACGA
AACCGGCTACGAGGAAGCTGCAGAGGAATTTGGATTGCACATCGAACGGC
GAGTTGATAAGAACTTTCTCGGTGTGCCTCTTTTCAACTCCATGTTTCAA
CGGGCTAACGATTCGAAAGCAATGGTGACAGTTATCATCAATGGTGACAT
TCTACTCTTCGACGATTTCGTACAAACAGTGAAGAAGGTCATCTCTAACT
TTGAACACTTTCTTGTAGTTGCAGCTCGTTACGATGTAGACAAATTGCCG
GATAATTTAGAAGATACTGATCCGGAATACGTTCGAAAAATTCGTCAACA
TGTTCTCTCTACTGGTACTCTGCACACTTACGGTGGAATGGATGTCTGGG
CTTGGAATACTCAGGGGCCGAGATTGTTTGATCCGGTGATGCCCCATTTC
ATTTTTGGGCGAGGAAAGTACGATAATTGGCTAACTCATGAAACGATCGC
CGCTGGAAGAAGGCAAGTTGTGGATGCTTCTGAAACTTGTTTAACCGTTC
ATGTCCGTCATGACTACCATCTCGTTACGGGCGGGGGCGATTCAAAGGCA
GGGGGTAAGCGAAGACTGCTGGGCGCATTCTGGTCTGAAGGTAAAAAGTC
AAAGTTTGAGCTTTTTATCAACATTTATCTCAGCCTGCATGTTGGATCGT
ATACCAACCAGATGGGAAACGTTTTGTTTGCGCCTTGGAAGCTTTCTCTC
TGTATGGAGCCAATGGGGATGTGCCTTTTGAAACGAAAGAGACCTGGTAT
TTGCAACTGCGAATTCTCAAGCTTCGTGAGCAATACTCAAACCGACCCCG
TTGTGAAAAACGGATCGAGAGTCATTAGATGTGGGATGATCTCCGTAGAG
ACCAAAGAGAATTTTGTCATTCCAGTTCTTGTTCCCGAAGGATCAACGGA
AGCCCCAGCTTTTGGTCTCCCGCTCACGATGAAATCGGTGATTGAAAAGG
TTGTTGTTAACAACACTGTCATATTATCAGCTCTCAACTACGGTTATCGT
GGGATCATGATGAACTGGGTTTGCAATATGAGACATTTAGGGATCACAAA
CTTTGTGATCGCCGCCTTAGATGCGGATTTATATAAGTTTGCCTACACCC
GCGGTTTGCCAACCTATCTCGAGAACACCATCTTTCAAGGATTGAACTCT
TCAATTATCAGCGATGCCACTTACGGGTCTGACTCTTTCAAGCAATTGAC
GAAAATGAAGTCCCGTGTGGTTGTTAGAATTCTGAAGGAGGGATTTAACG
TCATGTGGACAGACAGTGACATTATCTACTTTCGAAATCCATTGCAAGAC
ATGTGGGCGTATCACGCTGATCTCTCAATTCAGACCAACGCGCCCGACAA
CGAACCAATGAATGGTAGAAGGAGGCTGAATTCTGGATTTTATCTGGCGA
GGAGTAATCCTGCCACAATACAGGCGTTTGAAGACATCATTCTCTTCGCT
TCAAAGTCGCGAATGTCAGAACAACCATGTTTTTATGATGTCATGTGCGG
AAAGGAAGGCCAAAGAGCTGAAGGAGGCGACACATGCAAATATAATGGCA
TGATTGTGAAGCTTCTGAACCGCCATCTCTATCCCAACGGCATTACAGAT
GGAATCTGGGACACCACTCCCGGGAAAATCCCCGAAAAGTTTCCTCATCT
TTTTATTCTTCACAACAATTGGGTGAAAGGTGCCGATGGGAAAAGAGATC
GATTCGAACGACACGGCTTCATTCTATACGACAGAGAATCTGAATTGTGC
GTGTATCCAGAAACATGGTAG

protein sequence of Gchil4373.t1

>Gchil4373.t1 ID=Gchil4373.t1|Name=Gchil4373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=707bp
MRRDRDREYRRGNKSSSKHSNNISSWLFFWSAALLLISFIQLRNPQANSF
YRGTLRLPEHAEGEQVGDFSDRISDLSIEIFSAPKPFIGDDKPGNERAIR
SWLRLNPTPRITLLGYETGYEEAAEEFGLHIERRVDKNFLGVPLFNSMFQ
RANDSKAMVTVIINGDILLFDDFVQTVKKVISNFEHFLVVAARYDVDKLP
DNLEDTDPEYVRKIRQHVLSTGTLHTYGGMDVWAWNTQGPRLFDPVMPHF
IFGRGKYDNWLTHETIAAGRRQVVDASETCLTVHVRHDYHLVTGGGDSKA
GGKRRLLGAFWSEGKKSKFELFINIYLSLHVGSYTNQMGNVLFAPWKLSL
CMEPMGMCLLKRKRPGICNCEFSSFVSNTQTDPVVKNGSRVIRCGMISVE
TKENFVIPVLVPEGSTEAPAFGLPLTMKSVIEKVVVNNTVILSALNYGYR
GIMMNWVCNMRHLGITNFVIAALDADLYKFAYTRGLPTYLENTIFQGLNS
SIISDATYGSDSFKQLTKMKSRVVVRILKEGFNVMWTDSDIIYFRNPLQD
MWAYHADLSIQTNAPDNEPMNGRRRLNSGFYLARSNPATIQAFEDIILFA
SKSRMSEQPCFYDVMCGKEGQRAEGGDTCKYNGMIVKLLNRHLYPNGITD
GIWDTTPGKIPEKFPHLFILHNNWVKGADGKRDRFERHGFILYDRESELC
VYPETW*

mRNA from alignment at tig00004373_pilon:2373569..2375689-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4373.t1 ID=Gchil4373.t1|Name=Gchil4373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2121bp|location=Sequence derived from alignment at tig00004373_pilon:2373569..2375689- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTAGGGATCGTGACCGCGAGTACAGGAGAGGCAACAAAAGCTCGTC
GAAACACAGCAACAACATTTCGTCATGGCTATTCTTCTGGTCTGCAGCCC
TCCTGTTGATAAGTTTTATCCAACTTCGGAATCCCCAGGCAAATTCGTTC
TATCGGGGTACCCTCAGACTGCCTGAGCATGCGGAGGGTGAACAGGTTGG
TGATTTCAGTGACAGAATCAGCGATCTTTCGATAGAGATTTTTTCAGCGC
CCAAGCCCTTTATTGGAGATGATAAGCCAGGCAACGAAAGAGCAATACGA
TCATGGCTGCGCCTCAATCCTACCCCGAGGATTACATTGTTAGGATACGA
AACCGGCTACGAGGAAGCTGCAGAGGAATTTGGATTGCACATCGAACGGC
GAGTTGATAAGAACTTTCTCGGTGTGCCTCTTTTCAACTCCATGTTTCAA
CGGGCTAACGATTCGAAAGCAATGGTGACAGTTATCATCAATGGTGACAT
TCTACTCTTCGACGATTTCGTACAAACAGTGAAGAAGGTCATCTCTAACT
TTGAACACTTTCTTGTAGTTGCAGCTCGTTACGATGTAGACAAATTGCCG
GATAATTTAGAAGATACTGATCCGGAATACGTTCGAAAAATTCGTCAACA
TGTTCTCTCTACTGGTACTCTGCACACTTACGGTGGAATGGATGTCTGGG
CTTGGAATACTCAGGGGCCGAGATTGTTTGATCCGGTGATGCCCCATTTC
ATTTTTGGGCGAGGAAAGTACGATAATTGGCTAACTCATGAAACGATCGC
CGCTGGAAGAAGGCAAGTTGTGGATGCTTCTGAAACTTGTTTAACCGTTC
ATGTCCGTCATGACTACCATCTCGTTACGGGCGGGGGCGATTCAAAGGCA
GGGGGTAAGCGAAGACTGCTGGGCGCATTCTGGTCTGAAGGTAAAAAGTC
AAAGTTTGAGCTTTTTATCAACATTTATCTCAGCCTGCATGTTGGATCGT
ATACCAACCAGATGGGAAACGTTTTGTTTGCGCCTTGGAAGCTTTCTCTC
TGTATGGAGCCAATGGGGATGTGCCTTTTGAAACGAAAGAGACCTGGTAT
TTGCAACTGCGAATTCTCAAGCTTCGTGAGCAATACTCAAACCGACCCCG
TTGTGAAAAACGGATCGAGAGTCATTAGATGTGGGATGATCTCCGTAGAG
ACCAAAGAGAATTTTGTCATTCCAGTTCTTGTTCCCGAAGGATCAACGGA
AGCCCCAGCTTTTGGTCTCCCGCTCACGATGAAATCGGTGATTGAAAAGG
TTGTTGTTAACAACACTGTCATATTATCAGCTCTCAACTACGGTTATCGT
GGGATCATGATGAACTGGGTTTGCAATATGAGACATTTAGGGATCACAAA
CTTTGTGATCGCCGCCTTAGATGCGGATTTATATAAGTTTGCCTACACCC
GCGGTTTGCCAACCTATCTCGAGAACACCATCTTTCAAGGATTGAACTCT
TCAATTATCAGCGATGCCACTTACGGGTCTGACTCTTTCAAGCAATTGAC
GAAAATGAAGTCCCGTGTGGTTGTTAGAATTCTGAAGGAGGGATTTAACG
TCATGTGGACAGACAGTGACATTATCTACTTTCGAAATCCATTGCAAGAC
ATGTGGGCGTATCACGCTGATCTCTCAATTCAGACCAACGCGCCCGACAA
CGAACCAATGAATGGTAGAAGGAGGCTGAATTCTGGATTTTATCTGGCGA
GGAGTAATCCTGCCACAATACAGGCGTTTGAAGACATCATTCTCTTCGCT
TCAAAGTCGCGAATGTCAGAACAACCATGTTTTTATGATGTCATGTGCGG
AAAGGAAGGCCAAAGAGCTGAAGGAGGCGACACATGCAAATATAATGGCA
TGATTGTGAAGCTTCTGAACCGCCATCTCTATCCCAACGGCATTACAGAT
GGAATCTGGGACACCACTCCCGGGAAAATCCCCGAAAAGTTTCCTCATCT
TTTTATTCTTCACAACAATTGGGTGAAAGGTGCCGATGGGAAAAGAGATC
GATTCGAACGACACGGCTTCATTCTATACGACAGAGAATCTGAATTGTGC
GTGTATCCAGAAACATGGTAG

Coding sequence (CDS) from alignment at tig00004373_pilon:2373569..2375689-

>Gchil4373.t1 ID=Gchil4373.t1|Name=Gchil4373.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2121bp|location=Sequence derived from alignment at tig00004373_pilon:2373569..2375689- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTAGGGATCGTGACCGCGAGTACAGGAGAGGCAACAAAAGCTCGTC
GAAACACAGCAACAACATTTCGTCATGGCTATTCTTCTGGTCTGCAGCCC
TCCTGTTGATAAGTTTTATCCAACTTCGGAATCCCCAGGCAAATTCGTTC
TATCGGGGTACCCTCAGACTGCCTGAGCATGCGGAGGGTGAACAGGTTGG
TGATTTCAGTGACAGAATCAGCGATCTTTCGATAGAGATTTTTTCAGCGC
CCAAGCCCTTTATTGGAGATGATAAGCCAGGCAACGAAAGAGCAATACGA
TCATGGCTGCGCCTCAATCCTACCCCGAGGATTACATTGTTAGGATACGA
AACCGGCTACGAGGAAGCTGCAGAGGAATTTGGATTGCACATCGAACGGC
GAGTTGATAAGAACTTTCTCGGTGTGCCTCTTTTCAACTCCATGTTTCAA
CGGGCTAACGATTCGAAAGCAATGGTGACAGTTATCATCAATGGTGACAT
TCTACTCTTCGACGATTTCGTACAAACAGTGAAGAAGGTCATCTCTAACT
TTGAACACTTTCTTGTAGTTGCAGCTCGTTACGATGTAGACAAATTGCCG
GATAATTTAGAAGATACTGATCCGGAATACGTTCGAAAAATTCGTCAACA
TGTTCTCTCTACTGGTACTCTGCACACTTACGGTGGAATGGATGTCTGGG
CTTGGAATACTCAGGGGCCGAGATTGTTTGATCCGGTGATGCCCCATTTC
ATTTTTGGGCGAGGAAAGTACGATAATTGGCTAACTCATGAAACGATCGC
CGCTGGAAGAAGGCAAGTTGTGGATGCTTCTGAAACTTGTTTAACCGTTC
ATGTCCGTCATGACTACCATCTCGTTACGGGCGGGGGCGATTCAAAGGCA
GGGGGTAAGCGAAGACTGCTGGGCGCATTCTGGTCTGAAGGTAAAAAGTC
AAAGTTTGAGCTTTTTATCAACATTTATCTCAGCCTGCATGTTGGATCGT
ATACCAACCAGATGGGAAACGTTTTGTTTGCGCCTTGGAAGCTTTCTCTC
TGTATGGAGCCAATGGGGATGTGCCTTTTGAAACGAAAGAGACCTGGTAT
TTGCAACTGCGAATTCTCAAGCTTCGTGAGCAATACTCAAACCGACCCCG
TTGTGAAAAACGGATCGAGAGTCATTAGATGTGGGATGATCTCCGTAGAG
ACCAAAGAGAATTTTGTCATTCCAGTTCTTGTTCCCGAAGGATCAACGGA
AGCCCCAGCTTTTGGTCTCCCGCTCACGATGAAATCGGTGATTGAAAAGG
TTGTTGTTAACAACACTGTCATATTATCAGCTCTCAACTACGGTTATCGT
GGGATCATGATGAACTGGGTTTGCAATATGAGACATTTAGGGATCACAAA
CTTTGTGATCGCCGCCTTAGATGCGGATTTATATAAGTTTGCCTACACCC
GCGGTTTGCCAACCTATCTCGAGAACACCATCTTTCAAGGATTGAACTCT
TCAATTATCAGCGATGCCACTTACGGGTCTGACTCTTTCAAGCAATTGAC
GAAAATGAAGTCCCGTGTGGTTGTTAGAATTCTGAAGGAGGGATTTAACG
TCATGTGGACAGACAGTGACATTATCTACTTTCGAAATCCATTGCAAGAC
ATGTGGGCGTATCACGCTGATCTCTCAATTCAGACCAACGCGCCCGACAA
CGAACCAATGAATGGTAGAAGGAGGCTGAATTCTGGATTTTATCTGGCGA
GGAGTAATCCTGCCACAATACAGGCGTTTGAAGACATCATTCTCTTCGCT
TCAAAGTCGCGAATGTCAGAACAACCATGTTTTTATGATGTCATGTGCGG
AAAGGAAGGCCAAAGAGCTGAAGGAGGCGACACATGCAAATATAATGGCA
TGATTGTGAAGCTTCTGAACCGCCATCTCTATCCCAACGGCATTACAGAT
GGAATCTGGGACACCACTCCCGGGAAAATCCCCGAAAAGTTTCCTCATCT
TTTTATTCTTCACAACAATTGGGTGAAAGGTGCCGATGGGAAAAGAGATC
GATTCGAACGACACGGCTTCATTCTATACGACAGAGAATCTGAATTGTGC
GTGTATCCAGAAACATGGTAG