Gchil4370.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4370.t1
Unique NameGchil4370.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length398
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2365235..2366428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704872.1
Max annot lvl2759|Eukaryota
Evalue3.94e-29
EggNOG OGs28JNB@1|root,2QS1G@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4370Gchil4370Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2365235..2366428 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4370.t1.stop1Gchil4370.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2365235..2365237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4370.t1.CDS1Gchil4370.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2365235..2366428 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4370.t1.exon1Gchil4370.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2365235..2366428 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4370.t1.start1Gchil4370.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2366426..2366428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4370.t1Gchil4370.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2365235..2366428 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4370.t1 ID=Gchil4370.t1|Name=Gchil4370.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=398bp
MHPGTKCVGIYIILFLVLALICKWIPIGHASPQAEHSLLDSKPTTLSSTT
MSREKFHQSNAMDAVVNPMVRSSPVEKPNFLKRIATWFAHVLPFRSSSKQ
DDLSSDFISSSSRGSQTLFREARLADVDIAFHNPFTPRALRGLALLFHAC
SQSAKDWFELPEHKIISSHLLKRRFALLALTSQNRVTRCWSTRFPGRENA
DVARVKVAVRQWIAEQGLAPSTPLIAIGVSSGATLLSILSLELPIGSQAL
YISAGNQRALTNATNKYPSTLFVHLASDRYYAPPSSIAASRHILVRKKVS
MVGELSLQKVPFTATTFREHEPLLTKKVSQQIYEAAGQNEDRLGEVLRAN
KLPSNSLQRGAMQIARVVRGAHELSAMHVDKVTKWLVAQSRNSEKDE*
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spliced messenger RNA

>Gchil4370.t1 ID=Gchil4370.t1|Name=Gchil4370.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00004373_pilon:2365235..2366428- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCCCGGCACCAAATGCGTAGGAATTTACATTATTCTATTCCTTGT
TCTTGCCTTAATTTGCAAATGGATCCCCATAGGACATGCCTCACCTCAGG
CTGAGCACTCCTTGTTGGATTCAAAACCGACTACTCTATCTTCAACTACC
ATGAGCAGAGAAAAGTTTCATCAAAGCAACGCAATGGACGCAGTCGTGAA
CCCAATGGTCCGATCCTCACCCGTTGAGAAACCAAACTTCTTGAAGCGTA
TCGCCACGTGGTTCGCACATGTACTGCCATTCCGCTCTTCTTCCAAACAA
GATGACCTCTCTTCTGATTTCATATCTTCATCATCACGAGGTTCGCAAAC
ACTCTTTCGTGAAGCTCGCTTAGCAGATGTGGACATTGCGTTCCACAATC
CCTTCACACCCCGAGCACTTCGCGGGCTTGCGCTCCTATTCCACGCATGT
TCTCAGTCCGCCAAAGATTGGTTTGAACTGCCAGAACACAAGATTATAAG
CTCCCATCTACTCAAGAGGCGTTTCGCACTGCTAGCACTTACCTCTCAAA
ACCGTGTGACTCGCTGTTGGAGCACGCGCTTTCCTGGGCGTGAGAACGCG
GATGTAGCACGAGTCAAGGTCGCTGTACGTCAGTGGATAGCCGAACAAGG
ATTAGCCCCATCAACGCCTCTGATCGCTATAGGCGTCTCATCTGGCGCCA
CATTGCTGAGCATCTTGTCATTGGAACTACCAATCGGGAGTCAAGCTCTT
TACATCTCGGCTGGAAACCAACGTGCGCTGACCAACGCAACAAACAAGTA
TCCGAGTACGCTGTTTGTACATCTGGCATCTGATCGCTATTACGCACCAC
CTTCTTCAATAGCAGCCTCTCGTCACATCCTGGTTCGCAAAAAAGTTTCC
ATGGTAGGAGAACTTTCTTTACAGAAGGTTCCTTTCACAGCCACAACATT
CCGAGAGCACGAACCCCTTCTGACAAAAAAAGTATCCCAACAGATTTACG
AAGCTGCTGGCCAAAACGAAGACCGACTGGGTGAAGTACTAAGAGCGAAC
AAACTGCCAAGTAATTCATTGCAGAGAGGCGCGATGCAAATCGCACGCGT
GGTACGTGGAGCTCATGAACTTTCGGCGATGCACGTTGACAAGGTAACAA
AATGGCTGGTGGCACAAAGCAGAAACTCAGAGAAGGATGAGTGA
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protein sequence of Gchil4370.t1

>Gchil4370.t1 ID=Gchil4370.t1|Name=Gchil4370.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=398bp
MHPGTKCVGIYIILFLVLALICKWIPIGHASPQAEHSLLDSKPTTLSSTT
MSREKFHQSNAMDAVVNPMVRSSPVEKPNFLKRIATWFAHVLPFRSSSKQ
DDLSSDFISSSSRGSQTLFREARLADVDIAFHNPFTPRALRGLALLFHAC
SQSAKDWFELPEHKIISSHLLKRRFALLALTSQNRVTRCWSTRFPGRENA
DVARVKVAVRQWIAEQGLAPSTPLIAIGVSSGATLLSILSLELPIGSQAL
YISAGNQRALTNATNKYPSTLFVHLASDRYYAPPSSIAASRHILVRKKVS
MVGELSLQKVPFTATTFREHEPLLTKKVSQQIYEAAGQNEDRLGEVLRAN
KLPSNSLQRGAMQIARVVRGAHELSAMHVDKVTKWLVAQSRNSEKDE*
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mRNA from alignment at tig00004373_pilon:2365235..2366428-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4370.t1 ID=Gchil4370.t1|Name=Gchil4370.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00004373_pilon:2365235..2366428- (Gracilaria chilensis NLEC103_M9 male)
ATGCATCCCGGCACCAAATGCGTAGGAATTTACATTATTCTATTCCTTGT
TCTTGCCTTAATTTGCAAATGGATCCCCATAGGACATGCCTCACCTCAGG
CTGAGCACTCCTTGTTGGATTCAAAACCGACTACTCTATCTTCAACTACC
ATGAGCAGAGAAAAGTTTCATCAAAGCAACGCAATGGACGCAGTCGTGAA
CCCAATGGTCCGATCCTCACCCGTTGAGAAACCAAACTTCTTGAAGCGTA
TCGCCACGTGGTTCGCACATGTACTGCCATTCCGCTCTTCTTCCAAACAA
GATGACCTCTCTTCTGATTTCATATCTTCATCATCACGAGGTTCGCAAAC
ACTCTTTCGTGAAGCTCGCTTAGCAGATGTGGACATTGCGTTCCACAATC
CCTTCACACCCCGAGCACTTCGCGGGCTTGCGCTCCTATTCCACGCATGT
TCTCAGTCCGCCAAAGATTGGTTTGAACTGCCAGAACACAAGATTATAAG
CTCCCATCTACTCAAGAGGCGTTTCGCACTGCTAGCACTTACCTCTCAAA
ACCGTGTGACTCGCTGTTGGAGCACGCGCTTTCCTGGGCGTGAGAACGCG
GATGTAGCACGAGTCAAGGTCGCTGTACGTCAGTGGATAGCCGAACAAGG
ATTAGCCCCATCAACGCCTCTGATCGCTATAGGCGTCTCATCTGGCGCCA
CATTGCTGAGCATCTTGTCATTGGAACTACCAATCGGGAGTCAAGCTCTT
TACATCTCGGCTGGAAACCAACGTGCGCTGACCAACGCAACAAACAAGTA
TCCGAGTACGCTGTTTGTACATCTGGCATCTGATCGCTATTACGCACCAC
CTTCTTCAATAGCAGCCTCTCGTCACATCCTGGTTCGCAAAAAAGTTTCC
ATGGTAGGAGAACTTTCTTTACAGAAGGTTCCTTTCACAGCCACAACATT
CCGAGAGCACGAACCCCTTCTGACAAAAAAAGTATCCCAACAGATTTACG
AAGCTGCTGGCCAAAACGAAGACCGACTGGGTGAAGTACTAAGAGCGAAC
AAACTGCCAAGTAATTCATTGCAGAGAGGCGCGATGCAAATCGCACGCGT
GGTACGTGGAGCTCATGAACTTTCGGCGATGCACGTTGACAAGGTAACAA
AATGGCTGGTGGCACAAAGCAGAAACTCAGAGAAGGATGAGTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:2365235..2366428-

>Gchil4370.t1 ID=Gchil4370.t1|Name=Gchil4370.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1194bp|location=Sequence derived from alignment at tig00004373_pilon:2365235..2366428- (Gracilaria chilensis NLEC103_M9 male)
ATGCATCCCGGCACCAAATGCGTAGGAATTTACATTATTCTATTCCTTGT
TCTTGCCTTAATTTGCAAATGGATCCCCATAGGACATGCCTCACCTCAGG
CTGAGCACTCCTTGTTGGATTCAAAACCGACTACTCTATCTTCAACTACC
ATGAGCAGAGAAAAGTTTCATCAAAGCAACGCAATGGACGCAGTCGTGAA
CCCAATGGTCCGATCCTCACCCGTTGAGAAACCAAACTTCTTGAAGCGTA
TCGCCACGTGGTTCGCACATGTACTGCCATTCCGCTCTTCTTCCAAACAA
GATGACCTCTCTTCTGATTTCATATCTTCATCATCACGAGGTTCGCAAAC
ACTCTTTCGTGAAGCTCGCTTAGCAGATGTGGACATTGCGTTCCACAATC
CCTTCACACCCCGAGCACTTCGCGGGCTTGCGCTCCTATTCCACGCATGT
TCTCAGTCCGCCAAAGATTGGTTTGAACTGCCAGAACACAAGATTATAAG
CTCCCATCTACTCAAGAGGCGTTTCGCACTGCTAGCACTTACCTCTCAAA
ACCGTGTGACTCGCTGTTGGAGCACGCGCTTTCCTGGGCGTGAGAACGCG
GATGTAGCACGAGTCAAGGTCGCTGTACGTCAGTGGATAGCCGAACAAGG
ATTAGCCCCATCAACGCCTCTGATCGCTATAGGCGTCTCATCTGGCGCCA
CATTGCTGAGCATCTTGTCATTGGAACTACCAATCGGGAGTCAAGCTCTT
TACATCTCGGCTGGAAACCAACGTGCGCTGACCAACGCAACAAACAAGTA
TCCGAGTACGCTGTTTGTACATCTGGCATCTGATCGCTATTACGCACCAC
CTTCTTCAATAGCAGCCTCTCGTCACATCCTGGTTCGCAAAAAAGTTTCC
ATGGTAGGAGAACTTTCTTTACAGAAGGTTCCTTTCACAGCCACAACATT
CCGAGAGCACGAACCCCTTCTGACAAAAAAAGTATCCCAACAGATTTACG
AAGCTGCTGGCCAAAACGAAGACCGACTGGGTGAAGTACTAAGAGCGAAC
AAACTGCCAAGTAATTCATTGCAGAGAGGCGCGATGCAAATCGCACGCGT
GGTACGTGGAGCTCATGAACTTTCGGCGATGCACGTTGACAAGGTAACAA
AATGGCTGGTGGCACAAAGCAGAAACTCAGAGAAGGATGAGTGA
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