Gchil4368.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4368.t1
Unique NameGchil4368.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length499
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2361291..2362787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ315CT
Preferred nameFTR1
PFAMsFTR1
Max annot lvl2759|Eukaryota
KEGG koko:K07243
KEGG TC2.A.108.1,2.A.108.2
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005381,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006826,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0007154,GO:0008150,GO:0008324,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010106,GO:0015075,GO:0015093,GO:0015318,GO:0015684,GO:0016020,GO:0016021,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0031224,GO:0031226,GO:0031667,GO:0031668,GO:0031669,GO:0032991,GO:0033212,GO:0033215,GO:0033554,GO:0033573,GO:0034220,GO:0034755,GO:0042592,GO:0042594,GO:0044425,GO:0044459,GO:0044464,GO:0046873,GO:0046915,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0061840,GO:0065007,GO:0065008,GO:0070627,GO:0070838,GO:0071496,GO:0071944,GO:0072509,GO:0072511,GO:0097286,GO:0098655,GO:0098656,GO:0098657,GO:0098659,GO:0098660,GO:0098662,GO:0098707,GO:0098711,GO:0098739,GO:0098771,GO:0098796,GO:0098797,GO:0099587,GO:1901684,GO:1902494,GO:1902495,GO:1903874,GO:1905862,GO:1990204,GO:1990351
Evalue8.61e-81
EggNOG OGsCOG0672@1|root,2QQWE@2759|Eukaryota
Descriptionhigh-affinity ferrous iron transmembrane transporter activity
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4368Gchil4368Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2361291..2362787 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4368.t1.stop1Gchil4368.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2361291..2361293 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4368.t1.CDS1Gchil4368.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2361291..2362787 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4368.t1.exon1Gchil4368.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2361291..2362787 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4368.t1.start1Gchil4368.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2362785..2362787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4368.t1Gchil4368.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2361291..2362787 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4368.t1 ID=Gchil4368.t1|Name=Gchil4368.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=499bp
MGVFSIPAFFIVLREVLEACLVVGIVLAYINKIGATQYRRYVWWGAIGGI
VISLAVGLAFGIVVWTRGDQLFKEDAEKIFEGITFLVAASLLTWMIVWMM
VLGKNLRTKLETHVDHIVDDDDKSPLRRKLAIFLMVFVQVLREGIETVIF
LIGTANADENGGWRAIPLPGILAIVVGIAASFLVFRGLLQLDILKFFLVS
SFVLMAFAAGLVSHAFHELQEVDWFGAWEPAEERDWYNAVMWSTKSCCHD
SENEFFAMLRALFGYQDTPTFVEWATYFGYWLIIAVVFICINWRLVCASR
SKMLSLAKQLSACALLFTFVAFVFTLMNVTWIGVTTMTLSLVLSVVTVLC
LFESTMRLLKPLRRSRRVLLMASGVGWVLLMAFMFVLHLVQMECEGKEDR
CNLDMFFFFGLIFDPDFNEQGRQETSWPGIAVLSVSIVLTVYFFGALAFT
VLMSSFNVDTDGYYVGDNGVEEKLLDQEEKVTEEEVYAVPPVAEPVAV*
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spliced messenger RNA

>Gchil4368.t1 ID=Gchil4368.t1|Name=Gchil4368.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00004373_pilon:2361291..2362787- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGTCTTCTCGATCCCGGCCTTCTTCATTGTGCTGCGGGAGGTGCT
GGAGGCCTGCCTCGTCGTCGGCATTGTGCTCGCCTACATCAATAAGATCG
GCGCCACCCAGTACCGCCGATATGTGTGGTGGGGTGCCATCGGCGGAATT
GTCATCTCTCTTGCCGTCGGGCTGGCGTTCGGAATCGTTGTGTGGACCAG
GGGCGATCAGCTGTTCAAGGAAGATGCCGAGAAGATCTTTGAGGGAATCA
CCTTCCTGGTGGCTGCCTCGCTGCTGACGTGGATGATTGTGTGGATGATG
GTACTGGGCAAGAATTTGCGCACCAAACTCGAGACCCATGTGGATCACAT
CGTCGATGACGACGACAAGAGCCCGCTTCGACGCAAGCTGGCCATCTTCC
TCATGGTGTTCGTGCAAGTCCTAAGGGAGGGTATCGAGACGGTCATCTTC
CTCATTGGAACCGCCAATGCCGATGAGAACGGGGGGTGGCGCGCAATCCC
GCTGCCGGGAATTCTCGCCATTGTCGTTGGCATCGCTGCGTCATTCCTCG
TGTTCCGGGGGCTGCTTCAATTGGATATCCTCAAGTTCTTCCTGGTGTCC
AGCTTTGTGCTGATGGCGTTTGCGGCGGGACTGGTCAGTCATGCCTTCCA
TGAACTGCAGGAAGTGGATTGGTTTGGCGCTTGGGAACCGGCTGAGGAAC
GCGACTGGTATAATGCTGTCATGTGGTCAACCAAGAGCTGTTGCCATGAC
TCGGAGAACGAGTTCTTTGCCATGTTGCGCGCCCTGTTTGGATACCAGGA
CACCCCCACGTTTGTGGAGTGGGCCACGTACTTTGGCTACTGGCTCATTA
TTGCCGTCGTCTTCATTTGCATCAATTGGCGACTGGTTTGCGCATCGCGC
TCCAAGATGCTCTCGTTGGCGAAGCAACTGTCGGCTTGTGCGTTGCTGTT
CACGTTTGTGGCGTTTGTGTTCACGCTCATGAATGTCACTTGGATCGGCG
TCACCACCATGACGCTTTCTCTTGTTTTGTCTGTTGTCACCGTGCTGTGC
CTGTTTGAAAGCACCATGCGTCTGCTGAAACCGTTGAGAAGATCGAGACG
GGTGTTGTTGATGGCGAGCGGCGTGGGCTGGGTGCTGTTGATGGCGTTCA
TGTTTGTGTTGCACCTTGTGCAAATGGAATGTGAGGGCAAGGAGGATCGA
TGCAACCTTGACATGTTCTTCTTCTTTGGACTGATCTTCGACCCTGACTT
CAACGAGCAAGGACGGCAGGAAACATCATGGCCAGGTATCGCGGTGCTGT
CCGTGTCGATCGTGCTCACTGTGTACTTCTTCGGCGCGCTTGCGTTCACT
GTTCTCATGAGTTCATTCAACGTTGACACGGATGGGTACTACGTTGGAGA
CAATGGTGTAGAGGAAAAACTTTTGGACCAGGAGGAGAAGGTCACAGAGG
AGGAAGTGTATGCCGTTCCTCCAGTTGCTGAGCCAGTTGCGGTGTGA
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protein sequence of Gchil4368.t1

>Gchil4368.t1 ID=Gchil4368.t1|Name=Gchil4368.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=499bp
MGVFSIPAFFIVLREVLEACLVVGIVLAYINKIGATQYRRYVWWGAIGGI
VISLAVGLAFGIVVWTRGDQLFKEDAEKIFEGITFLVAASLLTWMIVWMM
VLGKNLRTKLETHVDHIVDDDDKSPLRRKLAIFLMVFVQVLREGIETVIF
LIGTANADENGGWRAIPLPGILAIVVGIAASFLVFRGLLQLDILKFFLVS
SFVLMAFAAGLVSHAFHELQEVDWFGAWEPAEERDWYNAVMWSTKSCCHD
SENEFFAMLRALFGYQDTPTFVEWATYFGYWLIIAVVFICINWRLVCASR
SKMLSLAKQLSACALLFTFVAFVFTLMNVTWIGVTTMTLSLVLSVVTVLC
LFESTMRLLKPLRRSRRVLLMASGVGWVLLMAFMFVLHLVQMECEGKEDR
CNLDMFFFFGLIFDPDFNEQGRQETSWPGIAVLSVSIVLTVYFFGALAFT
VLMSSFNVDTDGYYVGDNGVEEKLLDQEEKVTEEEVYAVPPVAEPVAV*
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mRNA from alignment at tig00004373_pilon:2361291..2362787-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4368.t1 ID=Gchil4368.t1|Name=Gchil4368.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00004373_pilon:2361291..2362787- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGTCTTCTCGATCCCGGCCTTCTTCATTGTGCTGCGGGAGGTGCT
GGAGGCCTGCCTCGTCGTCGGCATTGTGCTCGCCTACATCAATAAGATCG
GCGCCACCCAGTACCGCCGATATGTGTGGTGGGGTGCCATCGGCGGAATT
GTCATCTCTCTTGCCGTCGGGCTGGCGTTCGGAATCGTTGTGTGGACCAG
GGGCGATCAGCTGTTCAAGGAAGATGCCGAGAAGATCTTTGAGGGAATCA
CCTTCCTGGTGGCTGCCTCGCTGCTGACGTGGATGATTGTGTGGATGATG
GTACTGGGCAAGAATTTGCGCACCAAACTCGAGACCCATGTGGATCACAT
CGTCGATGACGACGACAAGAGCCCGCTTCGACGCAAGCTGGCCATCTTCC
TCATGGTGTTCGTGCAAGTCCTAAGGGAGGGTATCGAGACGGTCATCTTC
CTCATTGGAACCGCCAATGCCGATGAGAACGGGGGGTGGCGCGCAATCCC
GCTGCCGGGAATTCTCGCCATTGTCGTTGGCATCGCTGCGTCATTCCTCG
TGTTCCGGGGGCTGCTTCAATTGGATATCCTCAAGTTCTTCCTGGTGTCC
AGCTTTGTGCTGATGGCGTTTGCGGCGGGACTGGTCAGTCATGCCTTCCA
TGAACTGCAGGAAGTGGATTGGTTTGGCGCTTGGGAACCGGCTGAGGAAC
GCGACTGGTATAATGCTGTCATGTGGTCAACCAAGAGCTGTTGCCATGAC
TCGGAGAACGAGTTCTTTGCCATGTTGCGCGCCCTGTTTGGATACCAGGA
CACCCCCACGTTTGTGGAGTGGGCCACGTACTTTGGCTACTGGCTCATTA
TTGCCGTCGTCTTCATTTGCATCAATTGGCGACTGGTTTGCGCATCGCGC
TCCAAGATGCTCTCGTTGGCGAAGCAACTGTCGGCTTGTGCGTTGCTGTT
CACGTTTGTGGCGTTTGTGTTCACGCTCATGAATGTCACTTGGATCGGCG
TCACCACCATGACGCTTTCTCTTGTTTTGTCTGTTGTCACCGTGCTGTGC
CTGTTTGAAAGCACCATGCGTCTGCTGAAACCGTTGAGAAGATCGAGACG
GGTGTTGTTGATGGCGAGCGGCGTGGGCTGGGTGCTGTTGATGGCGTTCA
TGTTTGTGTTGCACCTTGTGCAAATGGAATGTGAGGGCAAGGAGGATCGA
TGCAACCTTGACATGTTCTTCTTCTTTGGACTGATCTTCGACCCTGACTT
CAACGAGCAAGGACGGCAGGAAACATCATGGCCAGGTATCGCGGTGCTGT
CCGTGTCGATCGTGCTCACTGTGTACTTCTTCGGCGCGCTTGCGTTCACT
GTTCTCATGAGTTCATTCAACGTTGACACGGATGGGTACTACGTTGGAGA
CAATGGTGTAGAGGAAAAACTTTTGGACCAGGAGGAGAAGGTCACAGAGG
AGGAAGTGTATGCCGTTCCTCCAGTTGCTGAGCCAGTTGCGGTGTGA
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Coding sequence (CDS) from alignment at tig00004373_pilon:2361291..2362787-

>Gchil4368.t1 ID=Gchil4368.t1|Name=Gchil4368.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1497bp|location=Sequence derived from alignment at tig00004373_pilon:2361291..2362787- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGTCTTCTCGATCCCGGCCTTCTTCATTGTGCTGCGGGAGGTGCT
GGAGGCCTGCCTCGTCGTCGGCATTGTGCTCGCCTACATCAATAAGATCG
GCGCCACCCAGTACCGCCGATATGTGTGGTGGGGTGCCATCGGCGGAATT
GTCATCTCTCTTGCCGTCGGGCTGGCGTTCGGAATCGTTGTGTGGACCAG
GGGCGATCAGCTGTTCAAGGAAGATGCCGAGAAGATCTTTGAGGGAATCA
CCTTCCTGGTGGCTGCCTCGCTGCTGACGTGGATGATTGTGTGGATGATG
GTACTGGGCAAGAATTTGCGCACCAAACTCGAGACCCATGTGGATCACAT
CGTCGATGACGACGACAAGAGCCCGCTTCGACGCAAGCTGGCCATCTTCC
TCATGGTGTTCGTGCAAGTCCTAAGGGAGGGTATCGAGACGGTCATCTTC
CTCATTGGAACCGCCAATGCCGATGAGAACGGGGGGTGGCGCGCAATCCC
GCTGCCGGGAATTCTCGCCATTGTCGTTGGCATCGCTGCGTCATTCCTCG
TGTTCCGGGGGCTGCTTCAATTGGATATCCTCAAGTTCTTCCTGGTGTCC
AGCTTTGTGCTGATGGCGTTTGCGGCGGGACTGGTCAGTCATGCCTTCCA
TGAACTGCAGGAAGTGGATTGGTTTGGCGCTTGGGAACCGGCTGAGGAAC
GCGACTGGTATAATGCTGTCATGTGGTCAACCAAGAGCTGTTGCCATGAC
TCGGAGAACGAGTTCTTTGCCATGTTGCGCGCCCTGTTTGGATACCAGGA
CACCCCCACGTTTGTGGAGTGGGCCACGTACTTTGGCTACTGGCTCATTA
TTGCCGTCGTCTTCATTTGCATCAATTGGCGACTGGTTTGCGCATCGCGC
TCCAAGATGCTCTCGTTGGCGAAGCAACTGTCGGCTTGTGCGTTGCTGTT
CACGTTTGTGGCGTTTGTGTTCACGCTCATGAATGTCACTTGGATCGGCG
TCACCACCATGACGCTTTCTCTTGTTTTGTCTGTTGTCACCGTGCTGTGC
CTGTTTGAAAGCACCATGCGTCTGCTGAAACCGTTGAGAAGATCGAGACG
GGTGTTGTTGATGGCGAGCGGCGTGGGCTGGGTGCTGTTGATGGCGTTCA
TGTTTGTGTTGCACCTTGTGCAAATGGAATGTGAGGGCAAGGAGGATCGA
TGCAACCTTGACATGTTCTTCTTCTTTGGACTGATCTTCGACCCTGACTT
CAACGAGCAAGGACGGCAGGAAACATCATGGCCAGGTATCGCGGTGCTGT
CCGTGTCGATCGTGCTCACTGTGTACTTCTTCGGCGCGCTTGCGTTCACT
GTTCTCATGAGTTCATTCAACGTTGACACGGATGGGTACTACGTTGGAGA
CAATGGTGTAGAGGAAAAACTTTTGGACCAGGAGGAGAAGGTCACAGAGG
AGGAAGTGTATGCCGTTCCTCCAGTTGCTGAGCCAGTTGCGGTGTGA
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