Gchil4366.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4366.t1
Unique Name	Gchil4366.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	551

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:2356044..2357696 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4792.ETI41807
PFAMs	C2
Max annot lvl	4776\|Peronosporales
Evalue	8.05e-35
EggNOG OGs	2BVDY@1\|root,2S261@2759\|Eukaryota,3QH4W@4776\|Peronosporales
Description	Protein kinase C conserved region 2 (CalB)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4366	Gchil4366	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 2356044..2357696 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4366.t1.start1	Gchil4366.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 2356044..2356046 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4366.t1.CDS1	Gchil4366.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 2356044..2357696 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4366.t1.exon1	Gchil4366.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 2356044..2357696 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4366.t1.stop1	Gchil4366.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 2357694..2357696 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4366.t1	Gchil4366.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 2356044..2357696 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:2356044..2357696+
coding sequence from alignment at tig00004373_pilon:2356044..2357696+

mRNA sequence

>Gchil4366.t1 ID=Gchil4366.t1|Name=Gchil4366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=551bp
MPVEAVQVRLMGACNLPAVNRAARTSDPYAVLHIVRTRETLTSHYCLNNI
NPTWYECFLFHDVNPSDVLAISLFDKNHVKSDVPIGTAFISIGHALSHAT
AVVSQAAFEASQTASFANAPHPSHASVPFHVPLESIPPPPNPSSSILHSS
IPPSYYPPPDSPPYSATTSHDTPRSTPSTSSISSSEVPCYYHPSSNDKCQ
PAKPYLSTEAGIRNFSQNVAPADGTPALADAPMQRSMTMTYAVAPQGSIT
LLVAPASVANLCAMVPPKMYKRFQINRTLERITTMHSRPSQSHPSGLSSF
GQHVGKFMKTGLEKAKPLQTVINSVQPIRPVFQEHSTWKITMLGVLDIFE
SKRHGWNRSYPAAQRIFQGPSSVVAKQIVKLQHTYLYGGAVSVKALQNLR
EDLQEVRGSILDGKDFCEVLNYGHRRGKPRLFTYVLMPTKLYLAETGAEF
FRDMMSKHAMHCSASPEVVYAGELQFVVTGYGTNNPKAKLIVDNNSGTYT
PGKEDLPKVAEVFHRNFPGLEVQALDFRDPYLSTLSAQLPPTNLQEETIY
*

spliced messenger RNA

>Gchil4366.t1 ID=Gchil4366.t1|Name=Gchil4366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at tig00004373_pilon:2356044..2357696+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGTTGAAGCAGTTCAGGTGCGTCTTATGGGCGCTTGCAACTTGCC
GGCTGTCAATCGGGCGGCTAGAACCTCCGACCCCTACGCGGTTTTGCACA
TTGTGCGCACTAGGGAGACTCTAACCTCGCATTATTGTCTTAACAACATA
AATCCAACATGGTATGAATGCTTCTTGTTTCATGACGTCAATCCGAGTGA
TGTGTTGGCTATCAGTCTCTTCGACAAGAATCATGTCAAGAGTGACGTTC
CAATCGGAACCGCCTTTATCTCTATCGGCCACGCGTTATCGCACGCCACC
GCAGTGGTGTCGCAGGCTGCTTTTGAAGCCTCTCAAACCGCTTCCTTCGC
CAATGCGCCACACCCCTCACATGCATCTGTTCCGTTTCATGTTCCTCTCG
AATCCATTCCCCCTCCGCCCAACCCCTCCTCTTCAATTCTGCATTCCTCA
ATTCCGCCCTCTTACTACCCGCCGCCAGACTCGCCACCTTATTCTGCCAC
CACCTCCCACGATACACCCCGTTCCACCCCATCAACGTCAAGCATTTCTT
CTTCAGAAGTTCCATGTTATTACCATCCGTCATCAAACGATAAATGCCAG
CCTGCAAAGCCGTATTTGTCTACTGAAGCGGGCATACGCAACTTTTCGCA
AAATGTTGCGCCTGCGGATGGCACTCCGGCGCTCGCAGACGCTCCTATGC
AACGCTCGATGACCATGACTTACGCCGTCGCCCCGCAAGGCTCTATCACA
CTACTTGTCGCGCCAGCAAGTGTCGCGAACTTATGTGCCATGGTTCCACC
AAAAATGTACAAACGCTTTCAGATCAACAGAACTTTGGAACGAATTACAA
CCATGCACTCTAGGCCGTCACAAAGCCATCCATCTGGGCTCAGCTCATTT
GGCCAACATGTAGGCAAGTTTATGAAGACGGGTCTTGAAAAAGCAAAACC
TTTACAAACTGTAATCAACTCTGTACAACCCATTCGACCCGTGTTTCAAG
AGCATTCCACCTGGAAAATCACGATGCTCGGAGTATTGGACATCTTTGAG
AGTAAGCGTCATGGATGGAATCGTTCTTACCCGGCTGCGCAAAGAATTTT
TCAAGGCCCAAGTTCTGTGGTCGCAAAGCAAATCGTCAAATTGCAACACA
CATATCTCTACGGTGGTGCTGTTTCCGTCAAAGCATTGCAGAACTTGAGA
GAAGACTTGCAAGAAGTACGGGGTAGCATACTCGATGGCAAGGACTTCTG
CGAGGTGCTCAACTACGGCCATCGGCGGGGCAAGCCACGTTTGTTCACGT
ATGTGTTGATGCCTACAAAATTGTACTTGGCCGAAACAGGGGCTGAATTC
TTCCGCGATATGATGTCGAAACACGCCATGCATTGCTCAGCCAGTCCGGA
AGTCGTCTACGCTGGAGAACTCCAATTTGTCGTTACCGGCTACGGCACCA
ATAATCCGAAGGCCAAGTTAATAGTCGATAATAATTCCGGCACCTACACA
CCTGGAAAGGAAGATCTGCCGAAGGTCGCAGAAGTATTCCATCGCAATTT
TCCAGGCCTAGAGGTACAGGCACTTGATTTTCGAGATCCATACTTGAGTA
CACTCAGTGCTCAATTACCGCCTACCAATCTGCAAGAAGAAACCATTTAC
TAG

protein sequence of Gchil4366.t1

>Gchil4366.t1 ID=Gchil4366.t1|Name=Gchil4366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=551bp
MPVEAVQVRLMGACNLPAVNRAARTSDPYAVLHIVRTRETLTSHYCLNNI
NPTWYECFLFHDVNPSDVLAISLFDKNHVKSDVPIGTAFISIGHALSHAT
AVVSQAAFEASQTASFANAPHPSHASVPFHVPLESIPPPPNPSSSILHSS
IPPSYYPPPDSPPYSATTSHDTPRSTPSTSSISSSEVPCYYHPSSNDKCQ
PAKPYLSTEAGIRNFSQNVAPADGTPALADAPMQRSMTMTYAVAPQGSIT
LLVAPASVANLCAMVPPKMYKRFQINRTLERITTMHSRPSQSHPSGLSSF
GQHVGKFMKTGLEKAKPLQTVINSVQPIRPVFQEHSTWKITMLGVLDIFE
SKRHGWNRSYPAAQRIFQGPSSVVAKQIVKLQHTYLYGGAVSVKALQNLR
EDLQEVRGSILDGKDFCEVLNYGHRRGKPRLFTYVLMPTKLYLAETGAEF
FRDMMSKHAMHCSASPEVVYAGELQFVVTGYGTNNPKAKLIVDNNSGTYT
PGKEDLPKVAEVFHRNFPGLEVQALDFRDPYLSTLSAQLPPTNLQEETIY
*

mRNA from alignment at tig00004373_pilon:2356044..2357696+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4366.t1 ID=Gchil4366.t1|Name=Gchil4366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at tig00004373_pilon:2356044..2357696+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGTTGAAGCAGTTCAGGTGCGTCTTATGGGCGCTTGCAACTTGCC
GGCTGTCAATCGGGCGGCTAGAACCTCCGACCCCTACGCGGTTTTGCACA
TTGTGCGCACTAGGGAGACTCTAACCTCGCATTATTGTCTTAACAACATA
AATCCAACATGGTATGAATGCTTCTTGTTTCATGACGTCAATCCGAGTGA
TGTGTTGGCTATCAGTCTCTTCGACAAGAATCATGTCAAGAGTGACGTTC
CAATCGGAACCGCCTTTATCTCTATCGGCCACGCGTTATCGCACGCCACC
GCAGTGGTGTCGCAGGCTGCTTTTGAAGCCTCTCAAACCGCTTCCTTCGC
CAATGCGCCACACCCCTCACATGCATCTGTTCCGTTTCATGTTCCTCTCG
AATCCATTCCCCCTCCGCCCAACCCCTCCTCTTCAATTCTGCATTCCTCA
ATTCCGCCCTCTTACTACCCGCCGCCAGACTCGCCACCTTATTCTGCCAC
CACCTCCCACGATACACCCCGTTCCACCCCATCAACGTCAAGCATTTCTT
CTTCAGAAGTTCCATGTTATTACCATCCGTCATCAAACGATAAATGCCAG
CCTGCAAAGCCGTATTTGTCTACTGAAGCGGGCATACGCAACTTTTCGCA
AAATGTTGCGCCTGCGGATGGCACTCCGGCGCTCGCAGACGCTCCTATGC
AACGCTCGATGACCATGACTTACGCCGTCGCCCCGCAAGGCTCTATCACA
CTACTTGTCGCGCCAGCAAGTGTCGCGAACTTATGTGCCATGGTTCCACC
AAAAATGTACAAACGCTTTCAGATCAACAGAACTTTGGAACGAATTACAA
CCATGCACTCTAGGCCGTCACAAAGCCATCCATCTGGGCTCAGCTCATTT
GGCCAACATGTAGGCAAGTTTATGAAGACGGGTCTTGAAAAAGCAAAACC
TTTACAAACTGTAATCAACTCTGTACAACCCATTCGACCCGTGTTTCAAG
AGCATTCCACCTGGAAAATCACGATGCTCGGAGTATTGGACATCTTTGAG
AGTAAGCGTCATGGATGGAATCGTTCTTACCCGGCTGCGCAAAGAATTTT
TCAAGGCCCAAGTTCTGTGGTCGCAAAGCAAATCGTCAAATTGCAACACA
CATATCTCTACGGTGGTGCTGTTTCCGTCAAAGCATTGCAGAACTTGAGA
GAAGACTTGCAAGAAGTACGGGGTAGCATACTCGATGGCAAGGACTTCTG
CGAGGTGCTCAACTACGGCCATCGGCGGGGCAAGCCACGTTTGTTCACGT
ATGTGTTGATGCCTACAAAATTGTACTTGGCCGAAACAGGGGCTGAATTC
TTCCGCGATATGATGTCGAAACACGCCATGCATTGCTCAGCCAGTCCGGA
AGTCGTCTACGCTGGAGAACTCCAATTTGTCGTTACCGGCTACGGCACCA
ATAATCCGAAGGCCAAGTTAATAGTCGATAATAATTCCGGCACCTACACA
CCTGGAAAGGAAGATCTGCCGAAGGTCGCAGAAGTATTCCATCGCAATTT
TCCAGGCCTAGAGGTACAGGCACTTGATTTTCGAGATCCATACTTGAGTA
CACTCAGTGCTCAATTACCGCCTACCAATCTGCAAGAAGAAACCATTTAC
TAG

Coding sequence (CDS) from alignment at tig00004373_pilon:2356044..2357696+

>Gchil4366.t1 ID=Gchil4366.t1|Name=Gchil4366.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1653bp|location=Sequence derived from alignment at tig00004373_pilon:2356044..2357696+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGTTGAAGCAGTTCAGGTGCGTCTTATGGGCGCTTGCAACTTGCC
GGCTGTCAATCGGGCGGCTAGAACCTCCGACCCCTACGCGGTTTTGCACA
TTGTGCGCACTAGGGAGACTCTAACCTCGCATTATTGTCTTAACAACATA
AATCCAACATGGTATGAATGCTTCTTGTTTCATGACGTCAATCCGAGTGA
TGTGTTGGCTATCAGTCTCTTCGACAAGAATCATGTCAAGAGTGACGTTC
CAATCGGAACCGCCTTTATCTCTATCGGCCACGCGTTATCGCACGCCACC
GCAGTGGTGTCGCAGGCTGCTTTTGAAGCCTCTCAAACCGCTTCCTTCGC
CAATGCGCCACACCCCTCACATGCATCTGTTCCGTTTCATGTTCCTCTCG
AATCCATTCCCCCTCCGCCCAACCCCTCCTCTTCAATTCTGCATTCCTCA
ATTCCGCCCTCTTACTACCCGCCGCCAGACTCGCCACCTTATTCTGCCAC
CACCTCCCACGATACACCCCGTTCCACCCCATCAACGTCAAGCATTTCTT
CTTCAGAAGTTCCATGTTATTACCATCCGTCATCAAACGATAAATGCCAG
CCTGCAAAGCCGTATTTGTCTACTGAAGCGGGCATACGCAACTTTTCGCA
AAATGTTGCGCCTGCGGATGGCACTCCGGCGCTCGCAGACGCTCCTATGC
AACGCTCGATGACCATGACTTACGCCGTCGCCCCGCAAGGCTCTATCACA
CTACTTGTCGCGCCAGCAAGTGTCGCGAACTTATGTGCCATGGTTCCACC
AAAAATGTACAAACGCTTTCAGATCAACAGAACTTTGGAACGAATTACAA
CCATGCACTCTAGGCCGTCACAAAGCCATCCATCTGGGCTCAGCTCATTT
GGCCAACATGTAGGCAAGTTTATGAAGACGGGTCTTGAAAAAGCAAAACC
TTTACAAACTGTAATCAACTCTGTACAACCCATTCGACCCGTGTTTCAAG
AGCATTCCACCTGGAAAATCACGATGCTCGGAGTATTGGACATCTTTGAG
AGTAAGCGTCATGGATGGAATCGTTCTTACCCGGCTGCGCAAAGAATTTT
TCAAGGCCCAAGTTCTGTGGTCGCAAAGCAAATCGTCAAATTGCAACACA
CATATCTCTACGGTGGTGCTGTTTCCGTCAAAGCATTGCAGAACTTGAGA
GAAGACTTGCAAGAAGTACGGGGTAGCATACTCGATGGCAAGGACTTCTG
CGAGGTGCTCAACTACGGCCATCGGCGGGGCAAGCCACGTTTGTTCACGT
ATGTGTTGATGCCTACAAAATTGTACTTGGCCGAAACAGGGGCTGAATTC
TTCCGCGATATGATGTCGAAACACGCCATGCATTGCTCAGCCAGTCCGGA
AGTCGTCTACGCTGGAGAACTCCAATTTGTCGTTACCGGCTACGGCACCA
ATAATCCGAAGGCCAAGTTAATAGTCGATAATAATTCCGGCACCTACACA
CCTGGAAAGGAAGATCTGCCGAAGGTCGCAGAAGTATTCCATCGCAATTT
TCCAGGCCTAGAGGTACAGGCACTTGATTTTCGAGATCCATACTTGAGTA
CACTCAGTGCTCAATTACCGCCTACCAATCTGCAAGAAGAAACCATTTAC
TAG