Gchil4359.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4359.t1
Unique NameGchil4359.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2320645..2321500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4359Gchil4359Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 2320645..2321500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4359.t1Gchil4359.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 2320645..2321500 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4359.t1.stop1Gchil4359.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 2320645..2320647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4359.t1.CDS1Gchil4359.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2320645..2320749 -
Gchil4359.t1.CDS2Gchil4359.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 2320853..2321500 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4359.t1.exon1Gchil4359.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2320645..2320749 -
Gchil4359.t1.exon2Gchil4359.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 2320853..2321500 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4359.t1.intron1Gchil4359.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 2320750..2320852 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4359.t1.start1Gchil4359.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 2321498..2321500 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4359.t1 ID=Gchil4359.t1|Name=Gchil4359.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=251bp
MIRRGFEFVKMTFMYLVGYACKGAVDIGFQTKNEWNVVNSWGKIRNILEP
LTEGLLEACVQKLSAVLAQIAAWLKTTRYGKNDQQDNSSEASSSYVEASS
EAASFPPFHQDDCINGDKMDMRTQGMHNPLPTKWISSRKSRFWELWEEDT
VGRGLNFALSKEERKIQAMVEKQKKREMLEQYFLKKQSERARRARKYYAE
LGQPEHSIYSPHSVLPGSFYAEDKRVMHNAKPNHRNVTYQMSQKSMPRML
*
back to top

spliced messenger RNA

>Gchil4359.t1 ID=Gchil4359.t1|Name=Gchil4359.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00004373_pilon:2320645..2321500- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAGGAGAGGATTTGAGTTTGTAAAGATGACGTTTATGTACTTGGT
GGGTTACGCATGCAAAGGTGCGGTGGACATTGGATTTCAGACGAAGAATG
AGTGGAATGTGGTCAACAGTTGGGGCAAGATTCGGAACATCCTTGAGCCC
TTGACAGAAGGGCTGTTGGAAGCCTGTGTTCAGAAGCTGTCAGCAGTTCT
CGCTCAGATCGCAGCGTGGTTGAAGACAACGCGTTATGGAAAGAACGACC
AGCAGGATAATTCTTCAGAAGCTTCATCTTCCTATGTCGAAGCATCCTCG
GAGGCTGCTTCTTTCCCTCCATTTCATCAAGATGATTGTATTAACGGTGA
TAAGATGGATATGCGCACTCAGGGAATGCATAATCCGCTGCCGACGAAAT
GGATTAGTTCGCGCAAGTCGAGGTTTTGGGAACTATGGGAAGAAGACACT
GTGGGAAGAGGACTAAATTTTGCTCTTAGCAAAGAAGAGCGAAAAATTCA
AGCTATGGTGGAGAAGCAAAAGAAGCGGGAGATGCTGGAACAATATTTCT
TGAAGAAGCAGTCTGAACGTGCTCGCCGTGCACGCAAATATTATGCTGAA
TTAGGCCAACCGGAGCACTCAATTTATTCTCCACACAGCGTGTTGCCAGG
CAGTTTTTATGCCGAAGACAAGAGAGTAATGCACAACGCAAAGCCAAACC
ACCGAAATGTGACGTACCAAATGAGCCAGAAATCTATGCCTCGCATGCTT
TAA
back to top

protein sequence of Gchil4359.t1

>Gchil4359.t1 ID=Gchil4359.t1|Name=Gchil4359.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=251bp
MIRRGFEFVKMTFMYLVGYACKGAVDIGFQTKNEWNVVNSWGKIRNILEP
LTEGLLEACVQKLSAVLAQIAAWLKTTRYGKNDQQDNSSEASSSYVEASS
EAASFPPFHQDDCINGDKMDMRTQGMHNPLPTKWISSRKSRFWELWEEDT
VGRGLNFALSKEERKIQAMVEKQKKREMLEQYFLKKQSERARRARKYYAE
LGQPEHSIYSPHSVLPGSFYAEDKRVMHNAKPNHRNVTYQMSQKSMPRML
*
back to top

mRNA from alignment at tig00004373_pilon:2320645..2321500-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4359.t1 ID=Gchil4359.t1|Name=Gchil4359.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=856bp|location=Sequence derived from alignment at tig00004373_pilon:2320645..2321500- (Gracilaria chilensis NLEC103_M9 male)
ATGATCAGGAGAGGATTTGAGTTTGTAAAGATGACGTTTATGTACTTGGT
GGGTTACGCATGCAAAGGTGCGGTGGACATTGGATTTCAGACGAAGAATG
AGTGGAATGTGGTCAACAGTTGGGGCAAGATTCGGAACATCCTTGAGCCC
TTGACAGAAGGGCTGTTGGAAGCCTGTGTTCAGAAGCTGTCAGCAGTTCT
CGCTCAGATCGCAGCGTGGTTGAAGACAACGCGTTATGGAAAGAACGACC
AGCAGGATAATTCTTCAGAAGCTTCATCTTCCTATGTCGAAGCATCCTCG
GAGGCTGCTTCTTTCCCTCCATTTCATCAAGATGATTGTATTAACGGTGA
TAAGATGGATATGCGCACTCAGGGAATGCATAATCCGCTGCCGACGAAAT
GGATTAGTTCGCGCAAGTCGAGGTTTTGGGAACTATGGGAAGAAGACACT
GTGGGAAGAGGACTAAATTTTGCTCTTAGCAAAGAAGAGCGAAAAATTCA
AGCTATGGTGGAGAAGCAAAAGAAGCGGGAGATGCTGGAACAATATTTCT
TGAAGAAGCAGTCTGAACGTGCTCGCCGTGCACGCAAATATTATGCTGAA
TTAGGCCAACCGGAGCACTCAATTTATTCTCCACACAGCGTGTTGCCAGT
CCCAACGGTTTCAAGATCGGTTTATAAAGGGTTCAGCACTGAAGAGAATA
AGAAAAATCTCATTCAAGATCCTGTGAAAACGGGCCCGGCTTGCTCTGCA
GGGCAGTTTTTATGCCGAAGACAAGAGAGTAATGCACAACGCAAAGCCAA
ACCACCGAAATGTGACGTACCAAATGAGCCAGAAATCTATGCCTCGCATG
CTTTAA
back to top

Coding sequence (CDS) from alignment at tig00004373_pilon:2320645..2321500-

>Gchil4359.t1 ID=Gchil4359.t1|Name=Gchil4359.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=753bp|location=Sequence derived from alignment at tig00004373_pilon:2320645..2321500- (Gracilaria chilensis NLEC103_M9 male)
ATGATCAGGAGAGGATTTGAGTTTGTAAAGATGACGTTTATGTACTTGGT
GGGTTACGCATGCAAAGGTGCGGTGGACATTGGATTTCAGACGAAGAATG
AGTGGAATGTGGTCAACAGTTGGGGCAAGATTCGGAACATCCTTGAGCCC
TTGACAGAAGGGCTGTTGGAAGCCTGTGTTCAGAAGCTGTCAGCAGTTCT
CGCTCAGATCGCAGCGTGGTTGAAGACAACGCGTTATGGAAAGAACGACC
AGCAGGATAATTCTTCAGAAGCTTCATCTTCCTATGTCGAAGCATCCTCG
GAGGCTGCTTCTTTCCCTCCATTTCATCAAGATGATTGTATTAACGGTGA
TAAGATGGATATGCGCACTCAGGGAATGCATAATCCGCTGCCGACGAAAT
GGATTAGTTCGCGCAAGTCGAGGTTTTGGGAACTATGGGAAGAAGACACT
GTGGGAAGAGGACTAAATTTTGCTCTTAGCAAAGAAGAGCGAAAAATTCA
AGCTATGGTGGAGAAGCAAAAGAAGCGGGAGATGCTGGAACAATATTTCT
TGAAGAAGCAGTCTGAACGTGCTCGCCGTGCACGCAAATATTATGCTGAA
TTAGGCCAACCGGAGCACTCAATTTATTCTCCACACAGCGTGTTGCCAGG
CAGTTTTTATGCCGAAGACAAGAGAGTAATGCACAACGCAAAGCCAAACC
ACCGAAATGTGACGTACCAAATGAGCCAGAAATCTATGCCTCGCATGCTT
TAA
back to top