Gchil4358.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4358.t1
Unique Name	Gchil4358.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	190

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:2316315..2316884 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT031CT
Preferred name	NT5M
PFAMs	NT5C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017
KEGG ko	ko:K01081
KEGG Reaction	R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346
KEGG Pathway	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006213,GO:0006220,GO:0006244,GO:0006259,GO:0006260,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008252,GO:0008253,GO:0009056,GO:0009058,GO:0009059,GO:0009116,GO:0009117,GO:0009123,GO:0009125,GO:0009129,GO:0009131,GO:0009159,GO:0009162,GO:0009164,GO:0009166,GO:0009176,GO:0009178,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0031974,GO:0034404,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034656,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046078,GO:0046079,GO:0046135,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0070013,GO:0071704,GO:0072527,GO:0072529,GO:0090304,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658
Evalue	9.45e-63
EggNOG OGs	COG4502@1\|root,2QPWJ@2759\|Eukaryota
EC	3.1.3.5
Description	pyrimidine deoxyribonucleoside monophosphate catabolic process
COG category	S
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4358	Gchil4358	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 2316315..2316884 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4358.t1.start1	Gchil4358.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 2316315..2316317 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4358.t1.CDS1	Gchil4358.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 2316315..2316884 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4358.t1.exon1	Gchil4358.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 2316315..2316884 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4358.t1.stop1	Gchil4358.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 2316882..2316884 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4358.t1	Gchil4358.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 2316315..2316884 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:2316315..2316884+
coding sequence from alignment at tig00004373_pilon:2316315..2316884+

mRNA sequence

>Gchil4358.t1 ID=Gchil4358.t1|Name=Gchil4358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=190bp
MRNVVLVDMDNTLVNWDKEFAKRWAALRPDDSPDIIKHRKHFELEQNFGH
DLMPVAIGIMSTPGFFAALEPQPGAIGAIREMLAAGLQVILCTAPHPLQY
ETCVAEKYGWVRKWLGESFLSKIVITRDKTIVKGRVLIDDKPAVKGKCDK
PDWEHVVFEQPYNLEVDDRPRMKNWAEWKAVLRNYFEMC*

spliced messenger RNA

>Gchil4358.t1 ID=Gchil4358.t1|Name=Gchil4358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00004373_pilon:2316315..2316884+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAAACGTGGTCCTAGTAGATATGGACAACACACTGGTGAACTGGGA
TAAAGAATTCGCAAAGCGATGGGCAGCCCTCAGACCGGATGACTCTCCTG
ATATAATCAAGCACAGAAAGCATTTTGAACTGGAACAGAACTTCGGCCAT
GATCTAATGCCAGTTGCAATCGGGATAATGTCTACACCTGGGTTTTTCGC
TGCTTTAGAACCGCAACCTGGCGCTATCGGAGCCATCCGCGAAATGTTAG
CTGCCGGTCTGCAAGTTATATTGTGCACGGCGCCTCATCCATTGCAATAT
GAGACTTGTGTTGCAGAAAAATATGGATGGGTTAGAAAATGGTTGGGAGA
GAGTTTCTTGTCGAAGATTGTGATCACGCGAGATAAGACAATTGTAAAGG
GACGGGTTTTAATAGATGACAAGCCGGCTGTCAAGGGAAAATGTGACAAG
CCCGACTGGGAGCATGTCGTTTTTGAACAACCCTACAACTTGGAGGTTGA
CGACAGACCAAGAATGAAGAATTGGGCCGAATGGAAAGCGGTGCTCAGGA
ATTATTTCGAGATGTGTTAA

protein sequence of Gchil4358.t1

>Gchil4358.t1 ID=Gchil4358.t1|Name=Gchil4358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=190bp
MRNVVLVDMDNTLVNWDKEFAKRWAALRPDDSPDIIKHRKHFELEQNFGH
DLMPVAIGIMSTPGFFAALEPQPGAIGAIREMLAAGLQVILCTAPHPLQY
ETCVAEKYGWVRKWLGESFLSKIVITRDKTIVKGRVLIDDKPAVKGKCDK
PDWEHVVFEQPYNLEVDDRPRMKNWAEWKAVLRNYFEMC*

mRNA from alignment at tig00004373_pilon:2316315..2316884+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4358.t1 ID=Gchil4358.t1|Name=Gchil4358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00004373_pilon:2316315..2316884+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGAAACGTGGTCCTAGTAGATATGGACAACACACTGGTGAACTGGGA
TAAAGAATTCGCAAAGCGATGGGCAGCCCTCAGACCGGATGACTCTCCTG
ATATAATCAAGCACAGAAAGCATTTTGAACTGGAACAGAACTTCGGCCAT
GATCTAATGCCAGTTGCAATCGGGATAATGTCTACACCTGGGTTTTTCGC
TGCTTTAGAACCGCAACCTGGCGCTATCGGAGCCATCCGCGAAATGTTAG
CTGCCGGTCTGCAAGTTATATTGTGCACGGCGCCTCATCCATTGCAATAT
GAGACTTGTGTTGCAGAAAAATATGGATGGGTTAGAAAATGGTTGGGAGA
GAGTTTCTTGTCGAAGATTGTGATCACGCGAGATAAGACAATTGTAAAGG
GACGGGTTTTAATAGATGACAAGCCGGCTGTCAAGGGAAAATGTGACAAG
CCCGACTGGGAGCATGTCGTTTTTGAACAACCCTACAACTTGGAGGTTGA
CGACAGACCAAGAATGAAGAATTGGGCCGAATGGAAAGCGGTGCTCAGGA
ATTATTTCGAGATGTGTTAA

Coding sequence (CDS) from alignment at tig00004373_pilon:2316315..2316884+

>Gchil4358.t1 ID=Gchil4358.t1|Name=Gchil4358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00004373_pilon:2316315..2316884+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGAAACGTGGTCCTAGTAGATATGGACAACACACTGGTGAACTGGGA
TAAAGAATTCGCAAAGCGATGGGCAGCCCTCAGACCGGATGACTCTCCTG
ATATAATCAAGCACAGAAAGCATTTTGAACTGGAACAGAACTTCGGCCAT
GATCTAATGCCAGTTGCAATCGGGATAATGTCTACACCTGGGTTTTTCGC
TGCTTTAGAACCGCAACCTGGCGCTATCGGAGCCATCCGCGAAATGTTAG
CTGCCGGTCTGCAAGTTATATTGTGCACGGCGCCTCATCCATTGCAATAT
GAGACTTGTGTTGCAGAAAAATATGGATGGGTTAGAAAATGGTTGGGAGA
GAGTTTCTTGTCGAAGATTGTGATCACGCGAGATAAGACAATTGTAAAGG
GACGGGTTTTAATAGATGACAAGCCGGCTGTCAAGGGAAAATGTGACAAG
CCCGACTGGGAGCATGTCGTTTTTGAACAACCCTACAACTTGGAGGTTGA
CGACAGACCAAGAATGAAGAATTGGGCCGAATGGAAAGCGGTGCTCAGGA
ATTATTTCGAGATGTGTTAA